#------------------------------------------------------------------------------ #$Date: 2016-02-19 22:18:51 +0000 (Fri, 19 Feb 2016) $ #$Revision: 176760 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/27/2012702.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012702 loop_ _publ_author_name 'Mills, Allison M.' 'Beek, Johannus A. M. van' 'Koten, Gerard van' 'Spek, Anthony L.' _publ_section_title ;{2,6-Bis[(dimethylamino-\kN)methyl]phenyl-\kC}iodopalladium(II) bis(diiodine) ; _journal_issue 5 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first m304 _journal_page_last m306 _journal_paper_doi 10.1107/S0108270102005620 _journal_volume 58 _journal_year 2002 _chemical_formula_iupac '[Pd I (C12 H19 N2)], 2I2' _chemical_formula_moiety 'C12 H19 I N2 Pd, 2I2' _chemical_formula_sum 'C12 H19 I5 N2 Pd' _chemical_formula_weight 932.19 _chemical_name_systematic ; [2,6--Bis((dimethylamino--\kN)methyl)phenyl--\kC]iodopalladium(II) bis(diiodine) ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 90.00 _cell_angle_beta 114.198(11) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 9.585(2) _cell_length_b 15.510(2) _cell_length_c 15.865(2) _cell_measurement_reflns_used 25 _cell_measurement_temperature 294(2) _cell_measurement_theta_max 14.2 _cell_measurement_theta_min 11.3 _cell_volume 2151.3(6) _computing_cell_refinement 'SET4 (de Boer & Duisenberg, 1984)' _computing_data_collection 'locally modified CAD-4 Software (de Boer & Duisenberg, 1984)' _computing_data_reduction 'HELENA (Spek, 1997)' _computing_molecular_graphics 'PLATON (Spek, 2002)' _computing_publication_material PLATON _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 294(2) _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.999 _diffrn_measurement_device_type 'Enraf-Nonius CAD-4F' _diffrn_measurement_method \w/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0384 _diffrn_reflns_av_sigmaI/netI 0.0210 _diffrn_reflns_limit_h_max 0 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 0 _diffrn_reflns_limit_k_min -18 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 4036 _diffrn_reflns_theta_full 24.99 _diffrn_reflns_theta_max 25.0 _diffrn_reflns_theta_min 1.92 _diffrn_standards_decay_% 25 _diffrn_standards_interval_time 60 _diffrn_standards_number 2 _exptl_absorpt_coefficient_mu 8.032 _exptl_absorpt_correction_T_max 0.14030 _exptl_absorpt_correction_T_min 0.06312 _exptl_absorpt_correction_type analytical _exptl_absorpt_process_details '(ABSTOMPA in PLATON; Spek, 2002)' _exptl_crystal_colour purple _exptl_crystal_density_diffrn 2.878 _exptl_crystal_density_method 'not measured' _exptl_crystal_description needle _exptl_crystal_F_000 1664 _exptl_crystal_size_max 1.45 _exptl_crystal_size_mid 0.38 _exptl_crystal_size_min 0.30 _refine_diff_density_max 1.447 _refine_diff_density_min -0.930 _refine_ls_extinction_coef 0.00323(15) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL97 _refine_ls_goodness_of_fit_ref 1.164 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 186 _refine_ls_number_reflns 3796 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.164 _refine_ls_R_factor_all 0.0476 _refine_ls_R_factor_gt 0.0397 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0422P)^2^+15.2774P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0999 _refine_ls_wR_factor_ref 0.1036 _reflns_number_gt 3296 _reflns_number_total 3796 _reflns_threshold_expression I>2\s(I) _cod_data_source_file gg1107.cif _cod_data_source_block I _cod_original_sg_symbol_H-M 'P 21/c' _cod_database_code 2012702 _cod_database_fobs_code 2012702 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol I1 0.96703(7) 0.06200(5) 0.35171(4) 0.0532(2) Uani d . 1 . . I I2 0.64297(7) 0.04592(4) 0.37342(4) 0.0520(2) Uani d . 1 . . I I3 0.35374(8) 0.04854(5) 0.37347(5) 0.0618(2) Uani d . 1 . . I I4 1.09363(8) 0.20068(5) 0.52348(5) 0.0587(2) Uani d . 1 . . I I5 1.18956(8) 0.30849(5) 0.67409(5) 0.0575(2) Uani d . 1 . . I Pd1 0.80241(7) 0.08624(4) 0.16342(4) 0.03467(19) Uani d . 1 . . Pd N1 0.7226(8) 0.2141(5) 0.1555(5) 0.0404(17) Uani d . 1 . . N N2 0.8403(7) -0.0398(4) 0.1245(5) 0.0355(15) Uani d . 1 . . N C1 0.7047(9) 0.0998(6) 0.0316(6) 0.0370(18) Uani d . 1 . . C C2 0.6672(10) 0.1808(6) -0.0046(6) 0.042(2) Uani d . 1 . . C C3 0.5996(12) 0.1904(7) -0.1002(7) 0.054(2) Uani d . 1 . . C H3 0.5717 0.2447 -0.1266 0.065 Uiso calc R 1 . . H C4 0.5748(12) 0.1189(7) -0.1551(7) 0.055(3) Uani d . 1 . . C H4 0.5311 0.1255 -0.2190 0.067 Uiso calc R 1 . . H C5 0.6134(10) 0.0364(6) -0.1176(6) 0.044(2) Uani d . 1 . . C H5 0.5953 -0.0114 -0.1560 0.053 Uiso calc R 1 . . H C6 0.6786(9) 0.0266(6) -0.0230(6) 0.0384(19) Uani d . 1 . . C C7 0.7107(11) 0.2516(6) 0.0657(7) 0.046(2) Uani d . 1 . . C H7A 0.6338 0.2967 0.0457 0.055 Uiso calc R 1 . . H H7B 0.8079 0.2765 0.0732 0.055 Uiso calc R 1 . . H C8 0.8183(12) 0.2712(7) 0.2325(8) 0.061(3) Uani d . 1 . . C H8A 0.7798 0.3291 0.2201 0.091 Uiso calc R 1 . . H H8B 0.9220 0.2701 0.2382 0.091 Uiso calc R 1 . . H H8C 0.8153 0.2514 0.2891 0.091 Uiso calc R 1 . . H C9 0.5674(10) 0.2106(6) 0.1544(7) 0.046(2) Uani d . 1 . . C H9A 0.5711 0.1800 0.2078 0.068 Uiso calc R 1 . . H H9B 0.4994 0.1814 0.0995 0.068 Uiso calc R 1 . . H H9C 0.5309 0.2682 0.1550 0.068 Uiso calc R 1 . . H C10 0.7183(10) -0.0566(5) 0.0297(6) 0.041(2) Uani d . 1 . . C H10A 0.7548 -0.0980 -0.0024 0.049 Uiso calc R 1 . . H H10B 0.6282 -0.0804 0.0345 0.049 Uiso calc R 1 . . H C11 0.8305(12) -0.1102(6) 0.1844(7) 0.051(2) Uani d . 1 . . C H11A 0.7328 -0.1083 0.1877 0.077 Uiso calc R 1 . . H H11B 0.9102 -0.1035 0.2453 0.077 Uiso calc R 1 . . H H11C 0.8423 -0.1646 0.1592 0.077 Uiso calc R 1 . . H C12 0.9940(10) -0.0410(6) 0.1216(7) 0.051(2) Uani d . 1 . . C H12A 1.0113 -0.0965 0.1009 0.077 Uiso calc R 1 . . H H12B 1.0714 -0.0299 0.1822 0.077 Uiso calc R 1 . . H H12C 0.9980 0.0026 0.0797 0.077 Uiso calc R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 I1 0.0439(3) 0.0746(5) 0.0402(3) 0.0008(3) 0.0166(3) -0.0084(3) I2 0.0510(4) 0.0567(4) 0.0457(4) 0.0038(3) 0.0171(3) 0.0014(3) I3 0.0511(4) 0.0828(5) 0.0517(4) 0.0022(4) 0.0211(3) 0.0152(4) I4 0.0584(4) 0.0566(4) 0.0712(5) 0.0034(3) 0.0367(4) 0.0055(3) I5 0.0611(4) 0.0524(4) 0.0725(5) -0.0007(3) 0.0410(4) 0.0026(3) Pd1 0.0313(3) 0.0360(4) 0.0373(3) -0.0007(3) 0.0146(3) -0.0064(3) N1 0.033(4) 0.035(4) 0.056(4) -0.006(3) 0.021(3) -0.019(3) N2 0.034(4) 0.033(4) 0.043(4) 0.006(3) 0.019(3) 0.003(3) C1 0.033(4) 0.044(5) 0.033(4) 0.004(4) 0.013(3) 0.005(4) C2 0.046(5) 0.037(5) 0.046(5) -0.009(4) 0.024(4) -0.005(4) C3 0.068(6) 0.049(6) 0.053(6) 0.006(5) 0.031(5) 0.015(5) C4 0.059(6) 0.069(7) 0.043(5) -0.006(5) 0.027(5) 0.006(5) C5 0.049(5) 0.042(5) 0.041(5) 0.003(4) 0.019(4) -0.005(4) C6 0.029(4) 0.046(5) 0.038(4) 0.005(4) 0.012(3) -0.006(4) C7 0.052(5) 0.032(5) 0.065(6) -0.005(4) 0.035(5) -0.002(4) C8 0.055(6) 0.044(6) 0.069(7) -0.008(5) 0.013(5) -0.027(5) C9 0.039(5) 0.049(5) 0.055(5) -0.002(4) 0.025(4) -0.008(4) C10 0.039(5) 0.036(5) 0.043(5) -0.005(4) 0.011(4) -0.011(4) C11 0.055(6) 0.036(5) 0.062(6) 0.005(4) 0.023(5) 0.008(4) C12 0.042(5) 0.047(5) 0.064(6) 0.005(4) 0.021(5) -0.010(5) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' I I -0.4742 1.8119 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag Pd1 I1 I2 88.75(3) ? Pd1 I1 I4 131.13(3) ? I2 I1 I4 90.37(2) yes I3 I2 I1 172.42(3) yes I5 I4 I1 175.53(3) yes C1 Pd1 N1 80.2(3) yes C1 Pd1 N2 81.3(3) yes N1 Pd1 N2 161.4(3) yes C1 Pd1 I1 174.8(2) yes N1 Pd1 I1 102.9(2) yes N2 Pd1 I1 95.65(19) yes C9 N1 C8 108.2(7) ? C9 N1 C7 108.5(7) ? C8 N1 C7 109.4(7) ? C9 N1 Pd1 107.7(5) ? C8 N1 Pd1 115.2(6) ? C7 N1 Pd1 107.8(5) ? C11 N2 C12 109.6(7) ? C11 N2 C10 106.7(7) ? C12 N2 C10 109.9(7) ? C11 N2 Pd1 115.5(5) ? C12 N2 Pd1 108.0(5) ? C10 N2 Pd1 107.1(5) ? C2 C1 C6 122.7(8) ? C2 C1 Pd1 119.0(6) ? C6 C1 Pd1 118.3(6) ? C1 C2 C3 118.7(8) ? C1 C2 C7 114.6(8) ? C3 C2 C7 126.6(9) ? C4 C3 C2 119.3(9) ? C4 C3 H3 120.4 ? C2 C3 H3 120.4 ? C3 C4 C5 121.7(9) ? C3 C4 H4 119.2 ? C5 C4 H4 119.2 ? C6 C5 C4 119.2(9) ? C6 C5 H5 120.4 ? C4 C5 H5 120.4 ? C5 C6 C1 118.4(8) ? C5 C6 C10 127.0(8) ? C1 C6 C10 114.6(7) ? C2 C7 N1 108.2(7) ? C2 C7 H7A 110.1 ? N1 C7 H7A 110.1 ? C2 C7 H7B 110.1 ? N1 C7 H7B 110.1 ? H7A C7 H7B 108.4 ? N1 C8 H8A 109.5 ? N1 C8 H8B 109.5 ? H8A C8 H8B 109.5 ? N1 C8 H8C 109.5 ? H8A C8 H8C 109.5 ? H8B C8 H8C 109.5 ? N1 C9 H9A 109.5 ? N1 C9 H9B 109.5 ? H9A C9 H9B 109.5 ? N1 C9 H9C 109.5 ? H9A C9 H9C 109.5 ? H9B C9 H9C 109.5 ? C6 C10 N2 109.0(7) ? C6 C10 H10A 109.9 ? N2 C10 H10A 109.9 ? C6 C10 H10B 109.9 ? N2 C10 H10B 109.9 ? H10A C10 H10B 108.3 ? N2 C11 H11A 109.5 ? N2 C11 H11B 109.5 ? H11A C11 H11B 109.5 ? N2 C11 H11C 109.5 ? H11A C11 H11C 109.5 ? H11B C11 H11C 109.5 ? N2 C12 H12A 109.5 ? N2 C12 H12B 109.5 ? H12A C12 H12B 109.5 ? N2 C12 H12C 109.5 ? H12A C12 H12C 109.5 ? H12B C12 H12C 109.5 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag I1 Pd1 . 2.7731(10) yes I1 I2 . 3.2720(11) yes I1 I4 . 3.2886(11) yes I2 I3 . 2.7729(11) yes I4 I5 . 2.7477(11) yes Pd1 C1 . 1.920(8) yes Pd1 N1 . 2.111(7) yes Pd1 N2 . 2.126(7) yes N1 C9 . 1.481(10) ? N1 C8 . 1.483(11) ? N1 C7 . 1.500(12) ? N2 C11 . 1.475(11) ? N2 C12 . 1.493(11) ? N2 C10 . 1.502(11) ? C1 C2 . 1.367(12) ? C1 C6 . 1.387(12) ? C2 C3 . 1.393(13) ? C2 C7 . 1.498(12) ? C3 C4 . 1.368(15) ? C3 H3 . 0.9300 ? C4 C5 . 1.397(14) ? C4 H4 . 0.9300 ? C5 C6 . 1.378(12) ? C5 H5 . 0.9300 ? C6 C10 . 1.499(12) ? C7 H7A . 0.9700 ? C7 H7B . 0.9700 ? C8 H8A . 0.9600 ? C8 H8B . 0.9600 ? C8 H8C . 0.9600 ? C9 H9A . 0.9600 ? C9 H9B . 0.9600 ? C9 H9C . 0.9600 ? C10 H10A . 0.9700 ? C10 H10B . 0.9700 ? C11 H11A . 0.9600 ? C11 H11B . 0.9600 ? C11 H11C . 0.9600 ? C12 H12A . 0.9600 ? C12 H12B . 0.9600 ? C12 H12C . 0.9600 ? loop_ _geom_contact_atom_site_label_1 _geom_contact_atom_site_label_2 _geom_contact_distance _geom_contact_site_symmetry_2 _geom_contact_publ_flag I1 I3 3.5851(13) 1_655 yes I3 I5 3.6495(13) 4_465 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion I2 I1 Pd1 N1 74.90(19) I4 I1 Pd1 N1 -14.49(19) I2 I1 Pd1 N2 -104.26(18) I4 I1 Pd1 N2 166.35(18) C1 Pd1 N1 C9 90.2(6) N2 Pd1 N1 C9 83.3(10) I1 Pd1 N1 C9 -94.1(5) C1 Pd1 N1 C8 -149.1(7) N2 Pd1 N1 C8 -155.9(8) I1 Pd1 N1 C8 26.7(7) C1 Pd1 N1 C7 -26.7(5) N2 Pd1 N1 C7 -33.5(11) I1 Pd1 N1 C7 149.1(5) C1 Pd1 N2 C11 -143.3(6) N1 Pd1 N2 C11 -136.5(8) I1 Pd1 N2 C11 41.0(6) C1 Pd1 N2 C12 93.7(6) N1 Pd1 N2 C12 100.5(9) I1 Pd1 N2 C12 -82.0(5) C1 Pd1 N2 C10 -24.6(5) N1 Pd1 N2 C10 -17.7(11) I1 Pd1 N2 C10 159.7(5) N1 Pd1 C1 C2 15.0(7) N2 Pd1 C1 C2 -167.2(7) N1 Pd1 C1 C6 -166.5(7) N2 Pd1 C1 C6 11.2(6) C6 C1 C2 C3 0.1(13) Pd1 C1 C2 C3 178.5(7) C6 C1 C2 C7 -177.5(8) Pd1 C1 C2 C7 0.9(10) C1 C2 C3 C4 -0.9(14) C7 C2 C3 C4 176.4(9) C2 C3 C4 C5 1.0(15) C3 C4 C5 C6 -0.2(15) C4 C5 C6 C1 -0.6(13) C4 C5 C6 C10 175.8(9) C2 C1 C6 C5 0.7(13) Pd1 C1 C6 C5 -177.7(6) C2 C1 C6 C10 -176.2(8) Pd1 C1 C6 C10 5.4(10) C1 C2 C7 N1 -23.8(10) C3 C2 C7 N1 158.8(9) C9 N1 C7 C2 -83.2(8) C8 N1 C7 C2 159.1(7) Pd1 N1 C7 C2 33.2(8) C5 C6 C10 N2 157.0(8) C1 C6 C10 N2 -26.5(10) C11 N2 C10 C6 157.0(7) C12 N2 C10 C6 -84.2(8) Pd1 N2 C10 C6 32.8(8)