#------------------------------------------------------------------------------ #$Date: 2012-02-03 17:16:24 +0000 (Fri, 03 Feb 2012) $ #$Revision: 32112 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/28/2012865.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012865 loop_ _publ_author_name 'Lecouvey, Marc' 'Barbey, Carole' 'Navaza, Alda' 'Neuman, Alain' 'Prang\'e, Thierry' _publ_section_title ; [Hydroxy(aryl)methylene]diphosphonic acids, a class of drugs in bone pathology treatments, crystallize as head-to-head dimers ; _journal_issue 8 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first o521 _journal_page_last o524 _journal_volume 58 _journal_year 2002 _chemical_formula_iupac 'C7 H10 O7 P2 , H2 O' _chemical_formula_moiety 'C7 H10 O7 P2 , H2 O' _chemical_formula_sum 'C7 H12 O8 P2' _chemical_formula_weight 286.10 _chemical_name_systematic ; [Hydroxy(phenyl)methylene]diphosphonic acid monohydrate ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 90 _cell_angle_beta 97.7(2) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 8.42(2) _cell_length_b 23.050(10) _cell_length_c 5.91(2) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 25 _cell_measurement_theta_min 8 _cell_volume 1137(5) _computing_cell_refinement 'PARAM (local program; author, 1995)' _computing_data_collection 'PHIL (local program; author, 1980)' _computing_data_reduction PHIL _computing_molecular_graphics 'PLATON (Spek, 2002)' _computing_publication_material 'SHELXL97 and PLATON' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS86 (Sheldrick, 1990)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.942 _diffrn_measured_fraction_theta_max 0.942 _diffrn_measurement_device_type 'Philips PW 1100' _diffrn_measurement_method \q/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54180 _diffrn_reflns_av_R_equivalents 0.000 _diffrn_reflns_av_sigmaI/netI 2.319 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 24 _diffrn_reflns_limit_k_min -23 _diffrn_reflns_limit_l_max 6 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 3430 _diffrn_reflns_theta_full 65.77 _diffrn_reflns_theta_max 65.77 _diffrn_reflns_theta_min 5.30 _diffrn_standards_decay_% 3 _diffrn_standards_interval_count 130 _diffrn_standards_interval_time 120 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 3.809 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.668 _exptl_crystal_density_meas 'not measured' _exptl_crystal_density_method 'not measured' _exptl_crystal_description 'rod-shaped prism' _exptl_crystal_F_000 586 _exptl_crystal_size_max 0.5 _exptl_crystal_size_mid 0.2 _exptl_crystal_size_min 0.2 _refine_diff_density_max 0.27 _refine_diff_density_min -0.29 _refine_ls_abs_structure_details 'Flack (1983), with 1421 Friedel pairs' _refine_ls_abs_structure_Flack 0.18(5) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.124 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 311 _refine_ls_number_reflns 3430 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.123 _refine_ls_R_factor_all 0.050 _refine_ls_R_factor_gt 0.040 _refine_ls_shift/su_max 0.098 _refine_ls_shift/su_mean 0.031 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0356P)^2^+1.8431P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.095 _refine_ls_wR_factor_ref 0.096 _reflns_number_gt 2875 _reflns_number_total 3430 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file fg1653.cif _[local]_cod_data_source_block IIIa _[local]_cod_cif_authors_sg_H-M 'P 21' _cod_original_cell_volume 1137(6) _cod_database_code 2012865 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol P1 0.88450(15) 0.23466(5) 0.1837(2) 0.0269(3) Uani d . 1 . . P P2 0.65186(15) 0.14613(6) 0.3620(2) 0.0272(3) Uani d . 1 . . P O1 0.9098(4) 0.26948(16) 0.4003(5) 0.0320(8) Uani d . 1 . . O O2 1.0351(4) 0.23296(17) 0.0580(6) 0.0334(8) Uani d . 1 . . O H21 1.1103 0.2187 0.1421 0.040 Uiso calc R 1 . . H O3 0.7506(5) 0.25647(18) 0.0005(6) 0.0420(10) Uani d . 1 . . O H31 0.6982 0.2815 0.0555 0.063 Uiso calc R 1 . . H O4 0.6528(4) 0.17542(15) 0.5883(5) 0.0288(8) Uani d . 1 . . O O5 0.5164(5) 0.1659(2) 0.1736(6) 0.0465(11) Uani d . 1 . . O H51 0.4566 0.1885 0.2285 0.070 Uiso calc R 1 . . H O6 0.6335(5) 0.07893(17) 0.3700(6) 0.0374(9) Uani d . 1 . . O H61 0.6775 0.0667 0.4929 0.056 Uiso calc R 1 . . H O7 0.7989(4) 0.13214(17) 0.0088(5) 0.0327(9) Uani d . 1 . . O H71 0.7591 0.1563 -0.0836 0.049 Uiso calc R 1 . . H C1 0.8353(6) 0.1590(2) 0.2318(8) 0.0323(12) Uani d . 1 . . C C2 0.9771(6) 0.1303(2) 0.3644(9) 0.0326(13) Uani d . 1 . . C C3 1.0611(7) 0.0870(3) 0.2660(9) 0.0390(13) Uani d . 1 . . C H3 1.0239 0.0750 0.1182 0.047 Uiso calc R 1 . . H C4 1.1970(7) 0.0614(3) 0.3787(10) 0.0418(14) Uani d . 1 . . C H4 1.2486 0.0318 0.3106 0.050 Uiso calc R 1 . . H C5 1.2549(7) 0.0809(3) 0.5964(10) 0.0461(15) Uani d . 1 . . C H5 1.3503 0.0664 0.6733 0.055 Uiso calc R 1 . . H C6 1.1681(8) 0.1220(3) 0.6957(10) 0.0458(16) Uani d . 1 . . C H6 1.2022 0.1335 0.8451 0.055 Uiso calc R 1 . . H C7 1.0300(6) 0.1468(2) 0.5771(7) 0.0256(10) Uani d . 1 . . C H7 0.9747 0.1751 0.6472 0.031 Uiso calc R 1 . . H P1' 0.33318(16) 0.27646(6) 0.5223(2) 0.0270(3) Uani d . 1 . . P P2' 0.56673(14) 0.36521(6) 0.3454(2) 0.0255(3) Uani d . 1 . . P O1' 0.3137(4) 0.24395(16) 0.2966(6) 0.0296(8) Uani d . 1 . . O O2' 0.1883(4) 0.28018(16) 0.6471(6) 0.0339(8) Uani d . 1 . . O H2P 0.1078 0.2712 0.5602 0.051 Uiso calc R 1 . . H O3' 0.4617(5) 0.25226(14) 0.7047(6) 0.0283(9) Uani d . 1 . . O H3P 0.5102 0.2261 0.6498 0.042 Uiso calc R 1 . . H O4' 0.5634(4) 0.33683(15) 0.1205(6) 0.0297(8) Uani d . 1 . . O O5' 0.7042(4) 0.34501(17) 0.5285(6) 0.0389(10) Uani d . 1 . . O H5P 0.7652 0.3238 0.4693 0.058 Uiso calc R 1 . . H O6' 0.5784(5) 0.43272(16) 0.3357(7) 0.0422(10) Uani d . 1 . . O H6P 0.5467 0.4439 0.2058 0.063 Uiso calc R 1 . . H O7' 0.4147(4) 0.37970(13) 0.7040(5) 0.0245(7) Uani d . 1 . . O H72 0.4908 0.3632 0.7783 0.037 Uiso calc R 1 . . H C1' 0.3842(6) 0.3541(2) 0.4783(8) 0.0245(11) Uani d . 1 . . C C2' 0.2401(7) 0.3814(3) 0.3509(9) 0.0362(13) Uani d . 1 . . C C3' 0.1543(6) 0.4203(2) 0.4541(8) 0.0329(12) Uani d . 1 . . C H3' 0.1897 0.4323 0.6025 0.039 Uiso calc R 1 . . H C4' 0.0091(9) 0.4430(3) 0.3348(13) 0.0579(18) Uani d . 1 . . C H4' -0.0538 0.4678 0.4095 0.070 Uiso calc R 1 . . H C5' -0.0386(7) 0.4285(3) 0.1118(10) 0.0406(14) Uani d . 1 . . C H5' -0.1304 0.4451 0.0327 0.049 Uiso calc R 1 . . H C6' 0.0455(7) 0.3914(3) 0.0102(11) 0.0564(18) Uani d . 1 . . C H6' 0.0118 0.3814 -0.1411 0.068 Uiso calc R 1 . . H C7' 0.1827(7) 0.3667(3) 0.1220(11) 0.0430(15) Uani d . 1 . . C H7' 0.2388 0.3399 0.0459 0.052 Uiso calc R 1 . . H O1W 0.5302(6) 0.4803(2) -0.0653(8) 0.0599(12) Uani d . 1 . . O O2W 0.7012(7) 0.03416(19) 0.7769(8) 0.0656(14) Uani d . 1 . . O loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 P1 0.0261(7) 0.0222(7) 0.0322(7) 0.0020(6) 0.0029(5) -0.0084(5) P2 0.0226(6) 0.0315(7) 0.0258(7) 0.0025(6) -0.0033(5) 0.0021(5) O1 0.036(2) 0.040(2) 0.0181(16) 0.0022(17) -0.0008(14) -0.0149(15) O2 0.0239(19) 0.045(2) 0.0328(18) -0.0047(17) 0.0080(15) 0.0003(17) O3 0.022(2) 0.056(3) 0.043(2) 0.0100(17) -0.0133(16) -0.0125(19) O4 0.0230(18) 0.038(2) 0.0227(18) 0.0040(15) -0.0065(13) -0.0074(15) O5 0.026(2) 0.087(3) 0.0228(19) 0.008(2) -0.0087(15) -0.017(2) O6 0.033(2) 0.038(2) 0.044(2) -0.0056(16) 0.0133(17) -0.0075(17) O7 0.0269(18) 0.057(3) 0.0140(16) 0.0097(17) 0.0018(13) -0.0069(15) C1 0.030(3) 0.035(3) 0.032(3) -0.010(2) 0.004(2) -0.003(2) C2 0.027(3) 0.030(3) 0.038(3) 0.002(2) -0.005(2) -0.009(2) C3 0.047(3) 0.039(3) 0.030(3) 0.011(3) -0.001(2) -0.001(2) C4 0.024(3) 0.046(4) 0.057(4) 0.013(3) 0.008(2) 0.014(3) C5 0.031(3) 0.060(4) 0.045(4) 0.012(3) -0.007(3) 0.014(3) C6 0.055(4) 0.050(4) 0.030(3) -0.017(3) -0.001(3) 0.009(3) C7 0.031(3) 0.026(3) 0.019(2) 0.002(2) 0.0019(19) -0.008(2) P1' 0.0285(7) 0.0323(8) 0.0185(7) 0.0031(6) -0.0027(5) 0.0043(5) P2' 0.0193(6) 0.0321(7) 0.0263(7) -0.0013(5) 0.0077(5) -0.0051(5) O1' 0.0196(18) 0.034(2) 0.0361(18) 0.0058(15) 0.0059(14) 0.0047(15) O2' 0.033(2) 0.025(2) 0.044(2) -0.0098(17) 0.0088(16) -0.0025(16) O3' 0.034(2) 0.0168(17) 0.0313(19) 0.0124(14) -0.0073(16) -0.0083(14) O4' 0.0299(19) 0.031(2) 0.029(2) 0.0086(16) 0.0080(14) 0.0056(15) O5' 0.024(2) 0.051(3) 0.043(2) 0.0096(18) 0.0058(16) -0.0036(18) O6' 0.046(2) 0.021(2) 0.059(3) -0.0104(17) 0.0074(19) 0.0088(17) O7' 0.0284(19) 0.0158(19) 0.0297(18) 0.0062(13) 0.0057(14) -0.0041(13) C1' 0.022(2) 0.027(3) 0.023(2) 0.007(2) -0.0018(18) 0.0024(19) C2' 0.041(3) 0.047(4) 0.022(3) 0.002(3) 0.011(2) 0.001(2) C3' 0.026(3) 0.047(3) 0.025(3) 0.001(2) 0.003(2) -0.001(2) C4' 0.068(5) 0.029(3) 0.080(5) 0.012(3) 0.022(4) 0.002(3) C5' 0.028(3) 0.045(4) 0.050(4) 0.002(2) 0.007(3) 0.018(3) C6' 0.035(4) 0.076(5) 0.054(4) 0.014(3) -0.010(3) -0.005(3) C7' 0.022(3) 0.041(3) 0.067(4) 0.013(3) 0.011(3) 0.017(3) O1W 0.065(3) 0.060(3) 0.055(3) -0.002(3) 0.007(2) 0.006(2) O2W 0.092(4) 0.033(3) 0.072(3) -0.006(3) 0.012(3) 0.000(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag P1 O1 . 1.502(6) yes P1 O2 . 1.554(5) yes P1 O3 . 1.539(6) yes P1 C1 . 1.824(5) yes P2 O4 . 1.497(7) yes P2 O5 . 1.552(6) yes P2 O6 . 1.558(4) yes P2 C1 . 1.840(7) yes O2 H21 . 0.8200 ? O3 H31 . 0.8200 ? O5 H51 . 0.8200 ? O6 H61 . 0.8201 ? O7 C1 . 1.451(8) ? O7 H71 . 0.8200 ? C1 C2 . 1.492(8) ? C2 C7 . 1.333(9) ? C2 C3 . 1.393(8) ? C3 C4 . 1.378(8) ? C3 H3 . 0.9300 ? C4 C5 . 1.388(10) ? C4 H4 . 0.9300 ? C5 C6 . 1.376(10) ? C5 H5 . 0.9300 ? C6 C7 . 1.397(8) ? C6 H6 . 0.9300 ? C7 H7 . 0.9300 ? P1' O1' . 1.520(7) yes P1' O2' . 1.511(5) yes P1' O3' . 1.527(6) yes P1' C1' . 1.866(5) yes P2' O4' . 1.478(7) yes P2' O5' . 1.547(6) yes P2' O6' . 1.561(4) yes P2' C1' . 1.836(7) yes O2' H2P . 0.8200 ? O3' H3P . 0.8200 ? O5' H5P . 0.8200 ? O6' H6P . 0.8200 ? O7' C1' . 1.450(8) ? O7' H72 . 0.8200 ? C1' C2' . 1.480(8) ? C2' C3' . 1.347(8) ? C2' C7' . 1.415(11) ? C3' C4' . 1.427(10) ? C3' H3' . 0.9300 ? C4' C5' . 1.366(11) ? C4' H4' . 0.9300 ? C5' C6' . 1.309(9) ? C5' H5' . 0.9300 ? C6' C7' . 1.374(8) ? C6' H6' . 0.9300 ? C7' H7' . 0.9300 ? loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' P P 0.2955 0.4335 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O1 P1 O3 115.6(3) O1 P1 O2 112.9(3) O3 P1 O2 103.9(4) O1 P1 C1 112.8(3) O3 P1 C1 105.2(2) O2 P1 C1 105.5(2) O4 P2 O5 115.1(3) O4 P2 O6 114.2(2) O5 P2 O6 104.4(2) O4 P2 C1 113.4(3) O5 P2 C1 103.3(4) O6 P2 C1 105.4(2) P1 O2 H21 109.5 P1 O3 H31 109.5 P2 O5 H51 109.5 P2 O6 H61 109.5 C1 O7 H71 109.4 O7 C1 C2 110.2(5) O7 C1 P1 106.9(4) C2 C1 P1 108.9(4) O7 C1 P2 103.0(4) C2 C1 P2 111.5(4) P1 C1 P2 116.1(3) C7 C2 C3 118.3(5) C7 C2 C1 120.8(5) C3 C2 C1 120.9(5) C4 C3 C2 122.7(6) C4 C3 H3 118.7 C2 C3 H3 118.7 C3 C4 C5 118.4(6) C3 C4 H4 120.8 C5 C4 H4 120.8 C6 C5 C4 118.6(5) C6 C5 H5 120.7 C4 C5 H5 120.7 C5 C6 C7 121.4(6) C5 C6 H6 119.3 C7 C6 H6 119.3 C2 C7 C6 120.5(5) C2 C7 H7 119.8 C6 C7 H7 119.8 O2' P1' O1' 117.2(3) O2' P1' O3' 102.6(4) O1' P1' O3' 115.0(3) O2' P1' C1' 103.3(2) O1' P1' C1' 110.5(3) O3' P1' C1' 107.1(2) O4' P2' O5' 114.7(3) O4' P2' O6' 113.7(3) O5' P2' O6' 106.3(2) O4' P2' C1' 114.0(3) O5' P2' C1' 104.4(3) O6' P2' C1' 102.5(2) P1' O2' H2P 109.5 P1' O3' H3P 109.5 P2' O5' H5P 109.5 P2' O6' H6P 109.5 C1' O7' H72 109.5 O7' C1' C2' 109.1(4) O7' C1' P2' 106.3(4) C2' C1' P2' 113.5(4) O7' C1' P1' 106.2(3) C2' C1' P1' 106.9(4) P2' C1' P1' 114.5(3) C3' C2' C7' 117.2(5) C3' C2' C1' 120.3(5) C7' C2' C1' 122.4(5) C2' C3' C4' 119.7(6) C2' C3' H3' 120.1 C4' C3' H3' 120.1 C5' C4' C3' 120.6(6) C5' C4' H4' 119.7 C3' C4' H4' 119.7 C6' C5' C4' 119.7(6) C6' C5' H5' 120.2 C4' C5' H5' 120.2 C5' C6' C7' 121.5(7) C5' C6' H6' 119.3 C7' C6' H6' 119.3 C6' C7' C2' 121.2(6) C6' C7' H7' 119.4 C2' C7' H7' 119.4 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O2 H21 O1' 1_655 0.82 1.92 2.583(9) 137 yes O2' H2P O1 1_455 0.82 1.80 2.602(9) 164 yes O3 H31 O4' 1_555 0.82 1.78 2.592(9) 169 yes O3' H3P O4 1_555 0.82 1.75 2.549(9) 165 yes O5 H51 O1' 1_555 0.82 1.84 2.647(9) 169 yes O5' H5P O1 1_555 0.82 1.83 2.637(9) 167 yes O6 H61 O2W 1_555 0.82 1.83 2.609(9) 160 yes O6' H6P O1W 1_555 0.82 1.80 2.594(9) 163 yes O7 H71 O4 1_554 0.82 2.07 2.805(9) 149 yes O7 H71 O3 1_555 0.82 2.36 2.894(10) 123 yes O7' H72 O4' 1_556 0.82 2.12 2.789(9) 138 yes