#------------------------------------------------------------------------------ #$Date: 2017-10-13 01:48:21 +0100 (Fri, 13 Oct 2017) $ #$Revision: 201957 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/29/2012927.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012927 loop_ _publ_author_name 'Brito-Arias, Marco' 'Dur\'an-P\'aramo, Enrique' 'Mata, Ignasi' 'Molins, Elies' _publ_section_title ; A comparative analysis of mono- and disaccharide benzyl fucopyranosides ; _journal_issue 9 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first o537 _journal_page_last o539 _journal_paper_doi 10.1107/S0108270102012556 _journal_volume 58 _journal_year 2002 _chemical_formula_moiety 'C17 H22 O7' _chemical_formula_sum 'C17 H22 O7' _chemical_formula_weight 338.36 _chemical_name_systematic ; benzyl 2-hydroxo-3,4-di-O-acetyl-\b-D-fucopyranoside ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _audit_creation_method 'WinGX routine CIF_UPDATE' _cell_angle_alpha 90 _cell_angle_beta 91.00(2) _cell_angle_gamma 90 _cell_formula_units_Z 2 _cell_length_a 8.735(2) _cell_length_b 9.526(2) _cell_length_c 10.605(3) _cell_measurement_reflns_used 15 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 12.6 _cell_measurement_theta_min 11.2 _cell_volume 882.3(4) _computing_cell_refinement 'CAD-4 EXPRESS' _computing_data_collection 'CAD-4 EXPRESS (Enraf-Nonius, 1994)' _computing_data_reduction 'XCAD4 (Harms & Wocadlo, 1995)' _computing_molecular_graphics 'ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 1998)' _computing_publication_material 'WinGX (Farrugia, 1999)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.999 _diffrn_measurement_device '\k-geometry diffractometer' _diffrn_measurement_device_type 'Enraf-Nonius CAD-4' _diffrn_measurement_method 'non-profiled \w/2\q scans' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.017 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 0 _diffrn_reflns_limit_k_min -13 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 2982 _diffrn_reflns_theta_full 30.39 _diffrn_reflns_theta_max 30.39 _diffrn_reflns_theta_min 2.33 _diffrn_standards_decay_% 0 _diffrn_standards_interval_time 60 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.099 _exptl_absorpt_correction_T_max 0.965 _exptl_absorpt_correction_T_min 0.890 _exptl_absorpt_correction_type '\y scan' _exptl_absorpt_process_details '(North et al., 1968)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.273 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 360 _exptl_crystal_size_max 0.85 _exptl_crystal_size_mid 0.70 _exptl_crystal_size_min 0.32 _refine_diff_density_max 0.23 _refine_diff_density_min -0.16 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.085 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 221 _refine_ls_number_reflns 2820 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.085 _refine_ls_R_factor_gt 0.040 _refine_ls_shift/su_max 0.004 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0964P)^2^+0.0099P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref 0.130 _reflns_number_gt 2457 _reflns_number_total 2820 _reflns_threshold_expression I>2\s(I) _cod_data_source_file fg1655.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_geom_bond_publ_flag' value 'Y' changed to 'y' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (7 times). '_geom_bond_publ_flag' value 'N' changed to 'n' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (40 times). Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_geom_bond_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (7 times). '_geom_bond_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (40 times). '_geom_angle_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (8 times). '_geom_angle_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (75 times). '_geom_torsion_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (37 times). '_geom_torsion_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (4 times). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 882.4(5) _cod_original_sg_symbol_Hall '-P 2yb' _cod_original_sg_symbol_H-M 'P 21' _cod_database_code 2012927 _cod_database_fobs_code 2012927 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol C1 0.93177(18) 0.7069(2) 0.25656(14) 0.0433(3) Uani d . 1 . . C H1 1.0371 0.6783 0.2770 0.052 Uiso calc R 1 . . H C2 0.86241(18) 0.78169(18) 0.36932(14) 0.0418(3) Uani d . 1 . . C H2 0.7608 0.8184 0.3465 0.05 Uiso calc R 1 . . H C3 0.85001(17) 0.67704(18) 0.47599(13) 0.0394(3) Uani d . 1 . . C H3 0.9531 0.6522 0.5064 0.047 Uiso calc R 1 . . H C4 0.76643(17) 0.54421(17) 0.43430(14) 0.0413(3) Uani d . 1 . . C H4 0.7695 0.4747 0.5024 0.05 Uiso calc R 1 . . H C5 0.8412(2) 0.4843(2) 0.31704(17) 0.0487(4) Uani d . 1 . . C H5 0.9467 0.4575 0.3388 0.058 Uiso calc R 1 . . H C6 0.7596(3) 0.3583(3) 0.2631(2) 0.0718(6) Uani d . 1 . . C H6A 0.8125 0.3257 0.1901 0.108 Uiso calc R 1 . . H H6B 0.6567 0.3838 0.2394 0.108 Uiso calc R 1 . . H H6C 0.7574 0.2851 0.3252 0.108 Uiso calc R 1 . . H C7 0.5017(2) 0.5503(2) 0.4878(2) 0.0527(4) Uani d . 1 . . C C8 0.3486(2) 0.6008(3) 0.4429(2) 0.0643(5) Uani d . 1 . . C H8A 0.3463 0.7015 0.4452 0.096 Uiso calc R 1 . . H H8B 0.2708 0.5641 0.4967 0.096 Uiso calc R 1 . . H H8C 0.3300 0.5692 0.3581 0.096 Uiso calc R 1 . . H C9 0.8020(2) 0.7019(2) 0.69494(15) 0.0457(3) Uani d . 1 . . C C10 0.6959(3) 0.7658(4) 0.7866(2) 0.0757(7) Uani d . 1 . . C H10A 0.7045 0.7171 0.8656 0.114 Uiso calc R 1 . . H H10B 0.5927 0.7588 0.7546 0.114 Uiso calc R 1 . . H H10C 0.7219 0.8629 0.7987 0.114 Uiso calc R 1 . . H C11 1.0074(2) 0.7551(3) 0.04565(17) 0.0605(5) Uani d . 1 . . C H11A 0.9953 0.8256 -0.0198 0.073 Uiso calc R 1 . . H H11B 0.9577 0.6700 0.0159 0.073 Uiso calc R 1 . . H C12 1.1764(2) 0.7259(2) 0.06563(15) 0.0493(4) Uani d . 1 . . C C13 1.2672(3) 0.8160(3) 0.1345(2) 0.0640(5) Uani d . 1 . . C H13 1.2240 0.8952 0.1708 0.077 Uiso calc R 1 . . H C14 1.4228(3) 0.7906(5) 0.1507(2) 0.0859(10) Uani d . 1 . . C H14 1.4821 0.8522 0.1989 0.103 Uiso calc R 1 . . H C15 1.4893(3) 0.6779(5) 0.0975(3) 0.0923(11) Uani d . 1 . . C H15 1.5937 0.6617 0.1082 0.111 Uiso calc R 1 . . H C16 1.3995(5) 0.5870(4) 0.0268(4) 0.0987(12) Uani d . 1 . . C H16 1.4440 0.5093 -0.0109 0.118 Uiso calc R 1 . . H C17 1.2414(3) 0.6107(3) 0.0112(2) 0.0707(6) Uani d . 1 . . C H17 1.1814 0.5485 -0.0358 0.085 Uiso calc R 1 . . H O1 0.93110(14) 0.80326(18) 0.15765(12) 0.0542(3) Uani d . 1 . . O O2 0.95875(17) 0.89248(17) 0.41208(13) 0.0593(4) Uani d . 1 . . O H2A 0.9850 0.9400 0.3517 0.089 Uiso calc R 1 . . H O3 0.76822(14) 0.74379(14) 0.57660(10) 0.0447(3) Uani d . 1 . . O O4 0.60999(12) 0.57921(15) 0.40270(11) 0.0451(3) Uani d . 1 . . O O5 0.84441(14) 0.58883(16) 0.21977(11) 0.0494(3) Uani d . 1 . . O O6 0.5285(2) 0.4934(4) 0.58677(19) 0.0944(8) Uani d . 1 . . O O7 0.90249(19) 0.6210(2) 0.72177(12) 0.0636(4) Uani d . 1 . . O loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 0.0386(6) 0.0554(9) 0.0360(6) 0.0019(6) 0.0041(5) 0.0038(6) C2 0.0410(6) 0.0460(8) 0.0384(6) -0.0049(6) 0.0028(5) 0.0016(6) C3 0.0381(6) 0.0463(8) 0.0340(6) 0.0032(6) 0.0050(4) -0.0018(5) C4 0.0411(6) 0.0447(7) 0.0383(6) 0.0020(6) 0.0043(5) -0.0001(6) C5 0.0530(8) 0.0490(8) 0.0441(7) 0.0015(7) 0.0065(6) -0.0069(7) C6 0.0934(17) 0.0573(12) 0.0649(12) -0.0120(12) 0.0135(11) -0.0174(10) C7 0.0491(7) 0.0566(10) 0.0528(9) -0.0065(7) 0.0127(6) 0.0030(8) C8 0.0450(8) 0.0678(13) 0.0805(13) -0.0014(8) 0.0121(8) 0.0020(11) C9 0.0529(8) 0.0478(8) 0.0363(6) 0.0025(7) 0.0030(5) -0.0039(6) C10 0.0856(14) 0.0989(19) 0.0431(8) 0.0313(15) 0.0139(9) -0.0047(11) C11 0.0567(9) 0.0863(15) 0.0387(7) 0.0029(10) 0.0044(6) 0.0106(9) C12 0.0589(9) 0.0535(9) 0.0358(6) 0.0015(7) 0.0132(6) 0.0104(6) C13 0.0626(11) 0.0766(14) 0.0531(10) -0.0059(11) 0.0118(8) -0.0030(10) C14 0.0637(12) 0.135(3) 0.0596(12) -0.0153(17) 0.0082(9) 0.0097(16) C15 0.0643(13) 0.132(3) 0.0811(16) 0.0172(18) 0.0157(12) 0.037(2) C16 0.112(2) 0.086(2) 0.100(2) 0.046(2) 0.0504(19) 0.0271(18) C17 0.0922(15) 0.0526(11) 0.0680(12) 0.0005(11) 0.0243(11) 0.0034(10) O1 0.0509(6) 0.0688(8) 0.0431(6) 0.0081(6) 0.0078(4) 0.0133(6) O2 0.0680(8) 0.0585(8) 0.0516(7) -0.0243(7) 0.0042(6) -0.0018(6) O3 0.0488(5) 0.0498(6) 0.0355(5) 0.0073(5) 0.0060(4) -0.0016(4) O4 0.0383(4) 0.0543(6) 0.0428(5) -0.0034(5) 0.0034(4) 0.0037(5) O5 0.0509(6) 0.0602(7) 0.0373(5) -0.0027(6) 0.0033(4) -0.0035(5) O6 0.0712(9) 0.138(2) 0.0752(11) 0.0016(12) 0.0211(8) 0.0479(14) O7 0.0775(9) 0.0712(10) 0.0419(6) 0.0229(8) -0.0024(6) 0.0011(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0 0 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.006 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _diffrn_standard_refln_index_h _diffrn_standard_refln_index_k _diffrn_standard_refln_index_l 2 -4 4 2 -4 -4 -5 -2 1 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O1 C1 O5 108.78(13) y O1 C1 C2 106.60(14) y O5 C1 C2 111.65(12) y O1 C1 H1 109.9 n O5 C1 H1 109.9 n C2 C1 H1 109.9 n O2 C2 C3 107.50(13) n O2 C2 C1 110.87(13) n C3 C2 C1 108.22(14) y O2 C2 H2 110.1 n C3 C2 H2 110.1 n C1 C2 H2 110.1 n O3 C3 C2 107.82(13) n O3 C3 C4 109.86(12) n C2 C3 C4 111.76(12) y O3 C3 H3 109.1 n C2 C3 H3 109.1 n C4 C3 H3 109.1 n O4 C4 C3 108.88(13) n O4 C4 C5 108.35(13) n C3 C4 C5 109.75(13) n O4 C4 H4 109.9 n C3 C4 H4 109.9 n C5 C4 H4 109.9 n O5 C5 C6 107.17(16) n O5 C5 C4 109.90(14) y C6 C5 C4 113.70(16) n O5 C5 H5 108.6 n C6 C5 H5 108.6 n C4 C5 H5 108.6 n C5 C6 H6A 109.5 n C5 C6 H6B 109.5 n H6A C6 H6B 109.5 n C5 C6 H6C 109.5 n H6A C6 H6C 109.5 n H6B C6 H6C 109.5 n O6 C7 O4 123.3(2) n O6 C7 C8 125.73(19) n O4 C7 C8 110.94(18) n C7 C8 H8A 109.5 n C7 C8 H8B 109.5 n H8A C8 H8B 109.5 n C7 C8 H8C 109.5 n H8A C8 H8C 109.5 n H8B C8 H8C 109.5 n O7 C9 O3 124.04(15) n O7 C9 C10 124.83(17) n O3 C9 C10 111.11(17) n C9 C10 H10A 109.5 n C9 C10 H10B 109.5 n H10A C10 H10B 109.5 n C9 C10 H10C 109.5 n H10A C10 H10C 109.5 n H10B C10 H10C 109.5 n O1 C11 C12 113.94(15) n O1 C11 H11A 108.8 n C12 C11 H11A 108.8 n O1 C11 H11B 108.8 n C12 C11 H11B 108.8 n H11A C11 H11B 107.7 n C17 C12 C13 119.1(2) n C17 C12 C11 120.0(2) n C13 C12 C11 120.9(2) n C12 C13 C14 120.9(3) n C12 C13 H13 119.6 n C14 C13 H13 119.6 n C15 C14 C13 121.0(3) n C15 C14 H14 119.5 n C13 C14 H14 119.5 n C14 C15 C16 118.8(3) n C14 C15 H15 120.6 n C16 C15 H15 120.6 n C15 C16 C17 120.7(3) n C15 C16 H16 119.6 n C17 C16 H16 119.6 n C12 C17 C16 119.5(3) n C12 C17 H17 120.2 n C16 C17 H17 120.2 n C1 O1 C11 114.44(16) y C2 O2 H2A 109.5 n C9 O3 C3 117.19(13) n C7 O4 C4 118.14(14) n C1 O5 C5 111.84(12) y loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag C1 O1 . 1.394(2) y C1 O5 . 1.411(2) y C1 C2 . 1.527(2) y C1 H1 . 0.98 n C2 O2 . 1.419(2) n C2 C3 . 1.513(2) y C2 H2 . 0.98 n C3 O3 . 1.4419(17) n C3 C4 . 1.523(2) y C3 H3 . 0.98 n C4 O4 . 1.4403(18) n C4 C5 . 1.526(2) y C4 H4 . 0.98 n C5 O5 . 1.434(2) y C5 C6 . 1.503(3) n C5 H5 . 0.98 n C6 H6A . 0.96 n C6 H6B . 0.96 n C6 H6C . 0.96 n C7 O6 . 1.202(3) n C7 O4 . 1.346(2) n C7 C8 . 1.492(3) n C8 H8A . 0.96 n C8 H8B . 0.96 n C8 H8C . 0.96 n C9 O7 . 1.199(2) n C9 O3 . 1.3445(19) n C9 C10 . 1.485(3) n C10 H10A . 0.96 n C10 H10B . 0.96 n C10 H10C . 0.96 n C11 O1 . 1.447(2) n C11 C12 . 1.513(3) n C11 H11A . 0.97 n C11 H11B . 0.97 n C12 C17 . 1.368(3) n C12 C13 . 1.371(3) n C13 C14 . 1.389(4) n C13 H13 . 0.93 n C14 C15 . 1.349(6) n C14 H14 . 0.93 n C15 C16 . 1.381(6) n C15 H15 . 0.93 n C16 C17 . 1.406(5) n C16 H16 . 0.93 n C17 H17 . 0.93 n O2 H2A . 0.82 n loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O2 H2A O7 2_756 0.82 2.14 2.878(2) 150 C15 H15 O5 1_655 0.93 2.57 3.447(3) 158 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag O1 C1 C2 O2 -66.54(17) n O5 C1 C2 O2 174.80(13) n O1 C1 C2 C3 175.78(12) n O5 C1 C2 C3 57.13(16) y O2 C2 C3 O3 66.81(16) n C1 C2 C3 O3 -173.38(12) n O2 C2 C3 C4 -172.35(13) n C1 C2 C3 C4 -52.54(16) n O3 C3 C4 O4 54.24(15) n C2 C3 C4 O4 -65.38(15) n O3 C3 C4 C5 172.68(13) n C2 C3 C4 C5 53.06(17) y O4 C4 C5 O5 63.03(18) n C3 C4 C5 O5 -55.72(17) y O4 C4 C5 C6 -57.1(2) n C3 C4 C5 C6 -175.85(17) n O1 C11 C12 C17 139.1(2) n O1 C11 C12 C13 -43.0(3) n C17 C12 C13 C14 -0.9(3) n C11 C12 C13 C14 -178.7(2) n C12 C13 C14 C15 1.1(4) n C13 C14 C15 C16 -0.4(5) n C14 C15 C16 C17 -0.5(5) n C13 C12 C17 C16 0.0(3) n C11 C12 C17 C16 177.9(2) n C15 C16 C17 C12 0.7(4) n O5 C1 O1 C11 -65.48(18) n C2 C1 O1 C11 174.01(14) n C12 C11 O1 C1 -62.4(3) y O7 C9 O3 C3 5.6(3) n C10 C9 O3 C3 -172.74(19) n C2 C3 O3 C9 -150.35(14) n C4 C3 O3 C9 87.64(16) n O6 C7 O4 C4 -2.2(4) n C8 C7 O4 C4 176.70(17) n C3 C4 O4 C7 -101.17(18) n C5 C4 O4 C7 139.52(17) n O1 C1 O5 C5 179.48(13) n C2 C1 O5 C5 -63.19(17) n C6 C5 O5 C1 -174.24(15) n C4 C5 O5 C1 61.74(17) n loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 ChemSpider 21181744