#------------------------------------------------------------------------------ #$Date: 2012-02-03 17:16:24 +0000 (Fri, 03 Feb 2012) $ #$Revision: 32112 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/29/2012994.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012994 loop_ _publ_author_name 'He, Junlin' 'Seela, Frank' 'Eickmeier, Henning' 'Reuter, Hans' _publ_section_title ; The regioisomeric 1H(2H)-pyrazolo[3,4-d]pyrimidine N^1^- and N^2^-(2'-deoxy-\b-D-ribofuranosides) ; _journal_issue 10 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first o593 _journal_page_last o595 _journal_volume 58 _journal_year 2002 _chemical_formula_iupac 'C10 H12 N4 O3' _chemical_formula_moiety 'C10 H12 N4 O3' _chemical_formula_sum 'C10 H12 N4 O3' _chemical_formula_weight 236.24 _chemical_melting_point 421.15 _chemical_name_systematic ; 1-(2-deoxy-\b-D-erythro-furanosyl)-1H-pyrazolo[3,4-d]pyrimidine ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 6.9306(8) _cell_length_b 11.1084(15) _cell_length_c 13.7591(11) _cell_measurement_reflns_used 40 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 12.51 _cell_measurement_theta_min 6.87 _cell_volume 1059.3(2) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Siemens, 1996)' _computing_data_reduction 'SHELXTL (Sheldrick, 1997)' _computing_molecular_graphics SHELXTL _computing_publication_material SHELXTL _computing_structure_refinement SHELXTL _computing_structure_solution SHELXTL _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Bruker P4' _diffrn_measurement_method 2\q/\w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0214 _diffrn_reflns_av_sigmaI/netI 0.0229 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -1 _diffrn_reflns_limit_k_max 1 _diffrn_reflns_limit_k_min -15 _diffrn_reflns_limit_l_max 1 _diffrn_reflns_limit_l_min -19 _diffrn_reflns_number 2375 _diffrn_reflns_theta_full 29.99 _diffrn_reflns_theta_max 29.99 _diffrn_reflns_theta_min 2.36 _diffrn_standards_decay_% none _diffrn_standards_interval_count 97 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.113 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.481 _exptl_crystal_density_method 'not measured' _exptl_crystal_description 'transparent needle' _exptl_crystal_F_000 496 _exptl_crystal_size_max 0.58 _exptl_crystal_size_mid 0.28 _exptl_crystal_size_min 0.28 _refine_diff_density_max 0.213 _refine_diff_density_min -0.176 _refine_ls_extinction_coef 0.023(3) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXTL _refine_ls_goodness_of_fit_ref 1.032 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 164 _refine_ls_number_reflns 1784 _refine_ls_number_restraints 4 _refine_ls_restrained_S_all 1.031 _refine_ls_R_factor_all 0.0542 _refine_ls_R_factor_gt 0.0424 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0518P)^2^+0.1719P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0985 _refine_ls_wR_factor_ref 0.1046 _reflns_number_gt 1474 _reflns_number_total 1784 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file ln1143.cif _[local]_cod_data_source_block II _cod_depositor_comments ; The following automatic conversions were performed: '_geom_bond_publ_flag' value 'N' changed to 'n' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (30 times). '_geom_bond_publ_flag' value 'Y' changed to 'y' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_geom_bond_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (30 times). '_geom_bond_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_geom_angle_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (52 times). '_geom_angle_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (2 times). '_geom_torsion_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (18 times). '_geom_torsion_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (20 times). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2012994 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol N1 0.8924(3) 0.39168(15) 0.57596(12) 0.0360(4) Uani d . 1 . . N N2 1.0487(3) 0.40571(19) 0.51553(14) 0.0477(5) Uani d . 1 . . N C3 1.0090(4) 0.4989(2) 0.45950(16) 0.0479(6) Uani d . 1 . . C H3A 1.0911 0.5288 0.4118 0.051(2) Uiso calc R 1 . . H C3A 0.8249(3) 0.54761(19) 0.48135(15) 0.0379(5) Uani d . 1 . . C C4 0.7003(4) 0.6378(2) 0.44932(17) 0.0463(6) Uani d . 1 . . C H4A 0.7374 0.6872 0.3981 0.051(2) Uiso calc R 1 . . H N5 0.5300(3) 0.65408(18) 0.49068(15) 0.0520(5) Uani d . 1 . . N C6 0.4842(4) 0.5813(2) 0.56550(18) 0.0489(6) Uani d . 1 . . C H6A 0.3653 0.5956 0.5947 0.051(2) Uiso calc R 1 . . H N7 0.5877(3) 0.49145(16) 0.60313(12) 0.0379(4) Uani d . 1 . . N C7A 0.7571(3) 0.47689(16) 0.55842(13) 0.0310(4) Uani d . 1 . . C C1' 0.8940(3) 0.30189(17) 0.65227(14) 0.0342(4) Uani d . 1 . . C H1'A 0.7628 0.2935 0.6779 0.051(2) Uiso calc R 1 . . H C2' 0.9654(4) 0.17831(17) 0.62058(15) 0.0412(5) Uani d . 1 . . C H2'A 1.0645 0.1845 0.5710 0.051(2) Uiso calc R 1 . . H H2'B 0.8606 0.1286 0.5966 0.051(2) Uiso calc R 1 . . H O3' 0.8964(3) 0.09209(14) 0.77947(14) 0.0558(5) Uani d D 1 . . O H3'O 0.877(4) 0.0222(19) 0.7689(17) 0.051(2) Uiso d D 1 . . H C3' 1.0469(3) 0.12955(16) 0.71604(15) 0.0366(5) Uani d D 1 . . C H3'C 1.1407 0.0651 0.7048 0.051(2) Uiso calc R 1 . . H C4' 1.1416(3) 0.24088(16) 0.75843(13) 0.0323(4) Uani d . 1 . . C H4' 1.1428 0.2349 0.8295 0.051(2) Uiso calc R 1 . . H O4' 1.0180(3) 0.33941(11) 0.72936(10) 0.0393(4) Uani d . 1 . . O C5' 1.3446(4) 0.2612(2) 0.72202(16) 0.0451(5) Uani d D 1 . . C H5'A 1.4254 0.1936 0.7404 0.051(2) Uiso calc R 1 . . H H5'B 1.3440 0.2668 0.6517 0.051(2) Uiso calc R 1 . . H O5' 1.4201(3) 0.3684(2) 0.76204(12) 0.0683(6) Uani d D 1 . . O H5'O 1.483(4) 0.401(2) 0.7210(16) 0.051(2) Uiso d D 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0363(9) 0.0364(8) 0.0354(8) 0.0026(8) 0.0028(8) 0.0077(7) N2 0.0410(10) 0.0561(11) 0.0461(9) 0.0032(10) 0.0103(9) 0.0122(9) C3 0.0466(13) 0.0568(13) 0.0402(10) -0.0023(12) 0.0071(11) 0.0144(10) C3A 0.0445(12) 0.0370(10) 0.0323(9) -0.0062(9) -0.0047(10) 0.0029(8) C4 0.0593(15) 0.0379(10) 0.0417(11) -0.0043(11) -0.0107(11) 0.0090(10) N5 0.0586(13) 0.0423(10) 0.0551(11) 0.0082(10) -0.0069(11) 0.0093(9) C6 0.0463(13) 0.0447(11) 0.0556(13) 0.0100(11) 0.0005(13) 0.0018(11) N7 0.0386(9) 0.0349(8) 0.0402(8) 0.0008(8) 0.0014(8) 0.0011(7) C7A 0.0357(10) 0.0277(8) 0.0296(8) -0.0028(8) -0.0068(8) -0.0011(8) C1' 0.0375(10) 0.0291(8) 0.0361(9) 0.0008(8) -0.0006(9) 0.0046(8) C2' 0.0519(13) 0.0279(9) 0.0437(10) -0.0034(10) -0.0042(10) -0.0079(8) O3' 0.0634(12) 0.0287(7) 0.0754(11) -0.0061(8) 0.0228(11) 0.0080(8) C3' 0.0439(11) 0.0216(7) 0.0444(10) 0.0019(8) 0.0067(10) 0.0007(8) C4' 0.0419(11) 0.0253(8) 0.0297(8) 0.0037(8) 0.0016(9) 0.0029(7) O4' 0.0573(10) 0.0230(6) 0.0378(7) 0.0074(7) -0.0082(8) -0.0025(5) C5' 0.0461(12) 0.0483(12) 0.0408(10) -0.0065(11) 0.0039(11) -0.0028(10) O5' 0.0808(14) 0.0824(13) 0.0418(8) -0.0455(12) 0.0150(10) -0.0154(9) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 C7A . 1.354(3) n N1 N2 . 1.374(2) n N1 C1' . 1.448(2) y N2 C3 . 1.320(3) n C3 C3A . 1.418(3) n C3 H3A . 0.9300 n C3A C4 . 1.394(3) n C3A C7A . 1.401(3) n C4 N5 . 1.323(3) n C4 H4A . 0.9300 n N5 C6 . 1.347(3) n C6 N7 . 1.334(3) n C6 H6A . 0.9300 n N7 C7A . 1.335(3) n C1' O4' . 1.427(2) n C1' C2' . 1.523(3) n C1' H1'A . 0.9800 n C2' C3' . 1.529(3) n C2' H2'A . 0.9700 n C2' H2'B . 0.9700 n O3' C3' . 1.422(3) n O3' H3'O . 0.80(2) n C3' C4' . 1.517(3) n C3' H3'C . 0.9800 n C4' O4' . 1.446(2) n C4' C5' . 1.510(3) n C4' H4' . 0.9800 n C5' O5' . 1.412(3) n C5' H5'A . 0.9700 n C5' H5'B . 0.9700 n O5' H5'O . 0.80(2) n loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C7A N1 N2 111.02(16) n C7A N1 C1' 128.04(18) y N2 N1 C1' 120.69(17) y C3 N2 N1 106.14(19) n N2 C3 C3A 111.3(2) n N2 C3 H3A 124.4 n C3A C3 H3A 124.4 n C4 C3A C7A 115.8(2) n C4 C3A C3 139.9(2) n C7A C3A C3 104.37(19) n N5 C4 C3A 121.0(2) n N5 C4 H4A 119.5 n C3A C4 H4A 119.5 n C4 N5 C6 117.2(2) n N7 C6 N5 128.3(2) n N7 C6 H6A 115.9 n N5 C6 H6A 115.9 n C6 N7 C7A 112.62(19) n N7 C7A N1 127.69(18) n N7 C7A C3A 125.15(19) n N1 C7A C3A 107.15(19) n O4' C1' N1 110.02(16) n O4' C1' C2' 106.30(16) n N1 C1' C2' 114.57(16) n O4' C1' H1'A 108.6 n N1 C1' H1'A 108.6 n C2' C1' H1'A 108.6 n C1' C2' C3' 101.15(15) n C1' C2' H2'A 111.5 n C3' C2' H2'A 111.5 n C1' C2' H2'B 111.5 n C3' C2' H2'B 111.5 n H2'A C2' H2'B 109.4 n C3' O3' H3'O 107.1(16) n O3' C3' C4' 108.66(17) n O3' C3' C2' 111.1(2) n C4' C3' C2' 101.62(15) n O3' C3' H3'C 111.7 n C4' C3' H3'C 111.7 n C2' C3' H3'C 111.7 n O4' C4' C5' 110.30(16) n O4' C4' C3' 104.74(16) n C5' C4' C3' 113.41(17) n O4' C4' H4' 109.4 n C5' C4' H4' 109.4 n C3' C4' H4' 109.4 n C1' O4' C4' 109.93(14) n O5' C5' C4' 110.00(19) n O5' C5' H5'A 109.7 n C4' C5' H5'A 109.7 n O5' C5' H5'B 109.7 n C4' C5' H5'B 109.7 n H5'A C5' H5'B 108.2 n C5' O5' H5'O 107.9(16) n loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O3' H3'O O4' 3_746 0.80(2) 2.16(2) 2.871(2) 149(3) O5' H5'O N7 1_655 0.80(2) 2.04(2) 2.828(3) 168(3) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C7A N1 N2 C3 -0.8(3) y C1' N1 N2 C3 -175.5(2) y N1 N2 C3 C3A -0.5(3) n N2 C3 C3A C4 -177.2(3) n N2 C3 C3A C7A 1.5(3) n C7A C3A C4 N5 0.4(3) n C3 C3A C4 N5 178.9(3) n C3A C4 N5 C6 1.0(3) n C4 N5 C6 N7 -1.6(4) n N5 C6 N7 C7A 0.6(3) n C6 N7 C7A N1 -177.3(2) n C6 N7 C7A C3A 1.0(3) n N2 N1 C7A N7 -179.71(19) n C1' N1 C7A N7 -5.5(3) n N2 N1 C7A C3A 1.8(2) n C1' N1 C7A C3A 176.0(2) n C4 C3A C7A N7 -1.4(3) y C3 C3A C7A N7 179.51(19) y C4 C3A C7A N1 177.12(18) n C3 C3A C7A N1 -1.9(2) n C7A N1 C1' O4' -100.4(2) y N2 N1 C1' O4' 73.3(2) y C7A N1 C1' C2' 139.9(2) y N2 N1 C1' C2' -46.4(3) n O4' C1' C2' C3' 30.5(2) y N1 C1' C2' C3' 152.21(19) y C1' C2' C3' O3' 76.1(2) y C1' C2' C3' C4' -39.3(2) y O3' C3' C4' O4' -82.19(18) n C2' C3' C4' O4' 35.0(2) y O3' C3' C4' C5' 157.48(17) y C2' C3' C4' C5' -85.3(2) n N1 C1' O4' C4' -133.65(17) y C2' C1' O4' C4' -9.1(2) n C5' C4' O4' C1' 105.76(19) y C3' C4' O4' C1' -16.6(2) y O4' C4' C5' O5' 60.9(2) y C3' C4' C5' O5' 177.97(18) y