#------------------------------------------------------------------------------ #$Date: 2013-12-28 13:58:47 +0000 (Sat, 28 Dec 2013) $ #$Revision: 91933 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/29/2012995.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012995 loop_ _publ_author_name 'He, Junlin' 'Seela, Frank' 'Eickmeier, Henning' 'Reuter, Hans' _publ_section_title ; The regioisomeric 1H(2H)-pyrazolo[3,4-d]pyrimidine N^1^- and N^2^-(2'-deoxy-\b-D-ribofuranosides) ; _journal_issue 10 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first o593 _journal_page_last o595 _journal_volume 58 _journal_year 2002 _chemical_formula_iupac 'C10 H12 N4 O3' _chemical_formula_moiety 'C10 H12 N4 O3' _chemical_formula_sum 'C10 H12 N4 O3' _chemical_formula_weight 236.24 _chemical_melting_point 427.15 _chemical_name_systematic ; 2-(2-deoxy-\b-D-erythro-furanosyl)-2H-pyrazolo[3,4-d]pyrimidine ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 102.772(9) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 4.9396(7) _cell_length_b 13.1528(14) _cell_length_c 8.1780(12) _cell_measurement_reflns_used 47 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 16.09 _cell_measurement_theta_min 4.50 _cell_volume 518.17(12) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Siemens, 1996)' _computing_data_reduction 'SHELXTL (Sheldrick, 1997)' _computing_molecular_graphics SHELXTL _computing_publication_material SHELXTL _computing_structure_refinement SHELXTL _computing_structure_solution SHELXTL _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.999 _diffrn_measurement_device_type 'Bruker P4' _diffrn_measurement_method 2\q/\w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0208 _diffrn_reflns_av_sigmaI/netI 0.0242 _diffrn_reflns_limit_h_max 1 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 18 _diffrn_reflns_limit_k_min -1 _diffrn_reflns_limit_l_max 11 _diffrn_reflns_limit_l_min -11 _diffrn_reflns_number 2202 _diffrn_reflns_theta_full 29.99 _diffrn_reflns_theta_max 29.99 _diffrn_reflns_theta_min 2.99 _diffrn_standards_decay_% none _diffrn_standards_interval_count 97 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.115 _exptl_absorpt_correction_type none _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.514 _exptl_crystal_density_method 'not measured' _exptl_crystal_description 'transparent block' _exptl_crystal_F_000 248 _exptl_crystal_size_max 0.57 _exptl_crystal_size_mid 0.57 _exptl_crystal_size_min 0.48 _refine_diff_density_max 0.276 _refine_diff_density_min -0.198 _refine_ls_extinction_coef 0.026(9) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXTL _refine_ls_goodness_of_fit_ref 1.072 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 164 _refine_ls_number_reflns 1562 _refine_ls_number_restraints 51 _refine_ls_restrained_S_all 1.053 _refine_ls_R_factor_all 0.0332 _refine_ls_R_factor_gt 0.0328 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0637P)^2^+0.0228P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0920 _refine_ls_wR_factor_ref 0.0924 _reflns_number_gt 1524 _reflns_number_total 1562 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file ln1143.cif _[local]_cod_data_source_block III _[local]_cod_cif_authors_sg_H-M 'P 21' _cod_depositor_comments ; The following automatic conversions were performed: '_geom_bond_publ_flag' value 'N' changed to 'n' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (30 times). '_geom_bond_publ_flag' value 'Y' changed to 'y' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_geom_bond_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (30 times). '_geom_bond_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_geom_angle_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (3 times). '_geom_angle_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (51 time). '_geom_torsion_publ_flag' value 'Y' changed to 'y' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (15 times). '_geom_torsion_publ_flag' value 'N' changed to 'n' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29 (22 times). Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2012995 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol N1 0.5700(3) 0.34085(10) 0.75921(16) 0.0342(3) Uani d U 1 . . N N2 0.5129(3) 0.44193(10) 0.74881(15) 0.0298(3) Uani d U 1 . . N C3 0.6151(3) 0.49316(12) 0.63402(17) 0.0319(3) Uani d U 1 . . C H3 0.5962 0.5621 0.6090 0.0445(17) Uiso calc R 1 . . H C3A 0.7568(3) 0.42020(12) 0.55988(17) 0.0302(3) Uani d U 1 . . C C4 0.9209(3) 0.41530(13) 0.43949(18) 0.0344(3) Uani d U 1 . . C H4 0.9559 0.4739 0.3840 0.0445(17) Uiso calc R 1 . . H N5 1.0250(3) 0.32733(12) 0.40560(17) 0.0380(3) Uani d U 1 . . N C6 0.9690(4) 0.24315(15) 0.4897(2) 0.0413(4) Uani d U 1 . . C H6 1.0398 0.1821 0.4599 0.0445(17) Uiso calc R 1 . . H N7 0.8271(3) 0.23774(12) 0.60788(18) 0.0400(3) Uani d U 1 . . N C7A 0.7196(3) 0.32771(11) 0.64265(17) 0.0306(3) Uani d U 1 . . C C1' 0.3648(3) 0.48283(11) 0.87360(17) 0.0299(3) Uani d U 1 . . C H1'C 0.2016 0.4407 0.8748 0.0445(17) Uiso calc R 1 . . H C2' 0.5555(3) 0.48418(13) 1.04885(18) 0.0344(3) Uani d U 1 . . C H2'A 0.5155 0.4278 1.1163 0.0445(17) Uiso calc R 1 . . H H2'B 0.7494 0.4816 1.0430 0.0445(17) Uiso calc R 1 . . H C3' 0.4834(3) 0.58572(12) 1.11851(17) 0.0315(3) Uani d DU 1 . . C H3'C 0.6403 0.6130 1.2019 0.0445(17) Uiso calc R 1 . . H O3' 0.2466(3) 0.57069(10) 1.18791(17) 0.0433(3) Uani d DU 1 . . O H3'O 0.218(4) 0.6217(14) 1.244(3) 0.0445(17) Uiso d D 1 . . H C4' 0.4171(3) 0.65211(11) 0.96105(17) 0.0287(3) Uani d U 1 . . C H4O' 0.2865 0.7056 0.9758 0.0445(17) Uiso calc R 1 . . H O4' 0.2806(2) 0.58275(9) 0.82936(13) 0.0330(2) Uani d U 1 . . O C5' 0.6703(3) 0.70013(13) 0.91727(19) 0.0337(3) Uani d DU 1 . . C H5'B 0.7573 0.7469 1.0049 0.0445(17) Uiso calc R 1 . . H H5'C 0.8043 0.6481 0.9062 0.0445(17) Uiso calc R 1 . . H O5' 0.5824(3) 0.75256(14) 0.76418(19) 0.0530(4) Uani d DU 1 . . O H5'O 0.717(4) 0.774(2) 0.727(2) 0.0445(17) Uiso d D 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0468(7) 0.0271(6) 0.0327(6) 0.0008(5) 0.0172(5) 0.0007(4) N2 0.0364(6) 0.0274(6) 0.0274(5) -0.0008(4) 0.0106(4) -0.0012(4) C3 0.0377(6) 0.0297(6) 0.0296(6) -0.0015(5) 0.0106(5) 0.0015(5) C3A 0.0346(6) 0.0302(6) 0.0264(5) -0.0025(5) 0.0079(5) 0.0012(5) C4 0.0373(7) 0.0392(8) 0.0283(6) -0.0038(6) 0.0103(5) 0.0031(5) N5 0.0401(6) 0.0449(7) 0.0322(6) 0.0011(6) 0.0150(5) -0.0008(6) C6 0.0513(9) 0.0377(8) 0.0393(7) 0.0059(7) 0.0198(7) -0.0017(6) N7 0.0561(8) 0.0321(6) 0.0364(6) 0.0043(6) 0.0201(6) 0.0009(5) C7A 0.0382(6) 0.0285(6) 0.0265(6) -0.0014(5) 0.0101(5) 0.0008(5) C1' 0.0324(6) 0.0294(6) 0.0295(6) -0.0010(5) 0.0102(5) -0.0028(5) C2' 0.0422(7) 0.0329(6) 0.0280(6) 0.0052(6) 0.0077(5) -0.0007(5) C3' 0.0359(6) 0.0317(6) 0.0287(5) -0.0036(5) 0.0108(5) -0.0041(5) O3' 0.0552(7) 0.0374(6) 0.0468(6) -0.0086(5) 0.0314(5) -0.0067(5) C4' 0.0272(5) 0.0291(6) 0.0316(6) 0.0000(4) 0.0107(5) -0.0028(5) O4' 0.0326(5) 0.0316(5) 0.0329(4) 0.0041(4) 0.0028(4) -0.0028(4) C5' 0.0288(6) 0.0370(7) 0.0378(7) -0.0023(5) 0.0127(5) 0.0017(6) O5' 0.0399(6) 0.0720(11) 0.0503(8) -0.0007(7) 0.0169(5) 0.0235(7) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 C7A . 1.3402(18) n N1 N2 . 1.3579(18) n N2 C3 . 1.3417(18) n N2 C1' . 1.4817(18) y C3 C3A . 1.402(2) n C3 H3 . 0.9300 n C3A C4 . 1.4083(19) n C3A C7A . 1.424(2) n C4 N5 . 1.320(2) n C4 H4 . 0.9300 n N5 C6 . 1.364(2) n C6 N7 . 1.315(2) n C6 H6 . 0.9300 n N7 C7A . 1.353(2) n C1' O4' . 1.4017(19) n C1' C2' . 1.531(2) n C1' H1'C . 0.9800 n C2' C3' . 1.525(2) n C2' H2'A . 0.9700 n C2' H2'B . 0.9700 n C3' O3' . 1.4227(18) n C3' C4' . 1.530(2) n C3' H3'C . 0.9800 n O3' H3'O . 0.842(15) n C4' O4' . 1.4579(17) n C4' C5' . 1.513(2) n C4' H4O' . 0.9800 n C5' O5' . 1.411(2) n C5' H5'B . 0.9700 n C5' H5'C . 0.9700 n O5' H5'O . 0.842(15) n loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C7A N1 N2 102.79(12) y C3 N2 N1 115.49(12) n C3 N2 C1' 128.25(13) y N1 N2 C1' 116.08(12) y N2 C3 C3A 105.07(13) n N2 C3 H3 127.5 n C3A C3 H3 127.5 n C3 C3A C4 138.86(15) n C3 C3A C7A 104.48(12) n C4 C3A C7A 116.62(14) n N5 C4 C3A 119.86(15) n N5 C4 H4 120.1 n C3A C4 H4 120.1 n C4 N5 C6 118.28(13) n N7 C6 N5 127.96(16) n N7 C6 H6 116.0 n N5 C6 H6 116.0 n C6 N7 C7A 113.88(15) n N1 C7A N7 124.48(13) n N1 C7A C3A 112.17(13) n N7 C7A C3A 123.34(13) n O4' C1' N2 109.03(11) n O4' C1' C2' 108.47(11) n N2 C1' C2' 110.72(12) n O4' C1' H1'C 109.5 n N2 C1' H1'C 109.5 n C2' C1' H1'C 109.5 n C3' C2' C1' 102.35(12) n C3' C2' H2'A 111.3 n C1' C2' H2'A 111.3 n C3' C2' H2'B 111.3 n C1' C2' H2'B 111.3 n H2'A C2' H2'B 109.2 n O3' C3' C2' 107.92(13) n O3' C3' C4' 111.90(13) n C2' C3' C4' 102.11(11) n O3' C3' H3'C 111.5 n C2' C3' H3'C 111.5 n C4' C3' H3'C 111.5 n C3' O3' H3'O 110.9(12) n O4' C4' C5' 110.97(11) n O4' C4' C3' 104.04(12) n C5' C4' C3' 113.76(12) n O4' C4' H4O' 109.3 n C5' C4' H4O' 109.3 n C3' C4' H4O' 109.3 n C1' O4' C4' 109.49(10) n O5' C5' C4' 107.80(12) n O5' C5' H5'B 110.1 n C4' C5' H5'B 110.1 n O5' C5' H5'C 110.1 n C4' C5' H5'C 110.1 n H5'B C5' H5'C 108.5 n C5' O5' H5'O 112.0(12) n loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O3' H3'O N7 2_657 0.842(15) 1.992(15) 2.832(2) 175(2) O5' H5'O N5 2_756 0.842(15) 1.972(15) 2.8011(19) 168.0(17) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C7A N1 N2 C3 0.14(17) y C7A N1 N2 C1' -175.41(12) y N1 N2 C3 C3A -0.39(17) n C1' N2 C3 C3A 174.52(13) n N2 C3 C3A C4 -176.77(17) n N2 C3 C3A C7A 0.44(16) n C3 C3A C4 N5 178.72(17) n C7A C3A C4 N5 1.7(2) n C3A C4 N5 C6 0.0(2) n C4 N5 C6 N7 -2.3(3) n N5 C6 N7 C7A 2.3(3) n N2 N1 C7A N7 179.37(15) n N2 N1 C7A C3A 0.17(17) n C6 N7 C7A N1 -179.35(16) n C6 N7 C7A C3A -0.2(2) n C3 C3A C7A N1 -0.40(18) n C4 C3A C7A N1 177.55(13) n C3 C3A C7A N7 -179.60(14) y C4 C3A C7A N7 -1.7(2) n C3 N2 C1' O4' 15.0(2) y N1 N2 C1' O4' -170.15(12) y C3 N2 C1' C2' -104.29(17) n N1 N2 C1' C2' 70.59(16) y O4' C1' C2' C3' 19.55(15) y N2 C1' C2' C3' 139.15(12) y C1' C2' C3' O3' 84.82(15) y C1' C2' C3' C4' -33.24(15) y O3' C3' C4' O4' -79.14(13) n C2' C3' C4' O4' 36.04(14) y O3' C3' C4' C5' 159.99(12) y C2' C3' C4' C5' -84.83(15) n N2 C1' O4' C4' -117.32(12) n C2' C1' O4' C4' 3.33(14) y C5' C4' O4' C1' 97.79(14) n C3' C4' O4' C1' -24.93(14) n O4' C4' C5' O5' 58.82(17) y C3' C4' C5' O5' 175.73(13) y _cod_database_fobs_code 2012995 _journal_paper_doi 10.1107/S0108270102014944