#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2012996.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2012996 loop_ _publ_author_name 'Fern\'andez, Daniel' 'Vega, Daniel' 'Goeta, Andr\'es' _publ_section_title ; The calcium-binding properties of pamidronate, a bone-resorption inhibitor ; _journal_issue 10 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first m494 _journal_page_last m497 _journal_volume 58 _journal_year 2002 _chemical_formula_iupac 'Ca(C3 H10 N O7 P2)2 , 2H2 O' _chemical_formula_moiety 'Ca 2+ , 2C3 H10 N O7 P2 - , 2H2 O' _chemical_formula_sum 'C6 H24 Ca N2 O16 P4' _chemical_formula_weight 544.24 _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-C 2yc' _symmetry_space_group_name_H-M 'C 1 2/c 1' _audit_creation_method 'WinGX routine CIF_UPDATE' _cell_angle_alpha 90 _cell_angle_beta 119.0310(10) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 14.2921(9) _cell_length_b 14.2755(9) _cell_length_c 11.1465(7) _cell_measurement_reflns_used 844 _cell_measurement_temperature 120(2) _cell_measurement_theta_max 25.99 _cell_measurement_theta_min 3.86 _cell_volume 1988.5(2) _computing_cell_refinement SMART-NT _computing_data_collection 'SMART-NT (Bruker, 1998)' _computing_data_reduction 'SAINT-NT (Bruker, 1998)' _computing_molecular_graphics 'XP in SHELXTL/PC (Sheldrick, 1991)' _computing_publication_material 'PARST (Nardelli, 1995) and WinGX (Farrugia, 1999)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'Bruker SMART-6000 CCD area-detector' _diffrn_measurement_method \w _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.016 _diffrn_reflns_limit_h_max 20 _diffrn_reflns_limit_h_min -20 _diffrn_reflns_limit_k_max 20 _diffrn_reflns_limit_k_min -20 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 10866 _diffrn_reflns_theta_full 30.51 _diffrn_reflns_theta_max 30.51 _diffrn_reflns_theta_min 2.17 _diffrn_standards_decay_% 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.719 _exptl_absorpt_correction_T_max 0.915 _exptl_absorpt_correction_T_min 0.876 _exptl_absorpt_correction_type integration _exptl_absorpt_process_details '(XPREP in SHELXTL-NT; Bruker, 1998)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.818 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 1128 _exptl_crystal_size_max 0.16 _exptl_crystal_size_mid 0.12 _exptl_crystal_size_min 0.11 _refine_diff_density_max 1.55 _refine_diff_density_min -0.43 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.064 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 164 _refine_ls_number_reflns 3036 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.064 _refine_ls_R_factor_gt 0.035 _refine_ls_shift/su_max 0.007 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0541P)^2^+4.9457P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref 0.100 _reflns_number_gt 2778 _reflns_number_total 3036 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file ob1076.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M C2/c _cod_original_cell_volume 1988.4(2) _cod_database_code 2012996 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z+1/2' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y, z-1/2' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol C1 0.57397(13) 0.21390(11) 0.02342(17) 0.0128(3) Uani d . 1 C C2 0.60143(15) 0.28641(13) 0.13847(19) 0.0183(3) Uani d . 1 C H7 0.6735 0.2721 0.2153 0.024 Uiso calc R 1 H H8 0.5497 0.2795 0.173 0.024 Uiso calc R 1 H C3 0.59979(15) 0.38941(13) 0.0944(2) 0.0195(3) Uani d . 1 C H9 0.5324 0.4012 0.0083 0.025 Uiso calc R 1 H H10 0.601 0.4313 0.1659 0.025 Uiso calc R 1 H N1 0.69227(14) 0.41229(12) 0.07268(18) 0.0200(3) Uani d . 1 N H4 0.688(3) 0.472(2) 0.046(3) 0.034(8) Uiso d . 1 H H5 0.681(3) 0.371(3) -0.006(4) 0.058(11) Uiso d . 1 H H6 0.754(3) 0.403(2) 0.152(3) 0.031(8) Uiso d . 1 H O1 0.60853(10) 0.03309(8) -0.01640(12) 0.0127(2) Uani d . 1 O O2 0.76291(10) 0.11959(10) 0.15736(14) 0.0149(2) Uani d . 1 O H2 0.790(3) 0.143(3) 0.217(4) 0.054(12) Uiso d . 1 H O3 0.61540(10) 0.07446(9) 0.21214(13) 0.0142(2) Uani d . 1 O O4 0.38340(10) 0.14473(9) -0.00568(13) 0.0149(2) Uani d . 1 O H3 0.386(2) 0.089(2) -0.010(3) 0.033(8) Uiso d . 1 H O5 0.41014(9) 0.14499(8) -0.21459(12) 0.0128(2) Uani d . 1 O O6 0.37818(10) 0.29637(9) -0.11744(13) 0.0148(2) Uani d . 1 O O7 0.61691(11) 0.24941(10) -0.06182(14) 0.0188(3) Uani d . 1 O H1 0.591(4) 0.216(3) -0.144(5) 0.085(15) Uiso d . 1 H OW 0.66877(12) 0.59350(10) -0.04323(16) 0.0208(3) Uani d . 1 O H11 0.655(3) 0.627(3) -0.001(4) 0.044(9) Uiso d . 1 H H12 0.725(3) 0.613(2) -0.034(3) 0.037(8) Uiso d . 1 H P1 0.64052(3) 0.10200(3) 0.10133(4) 0.01034(10) Uani d . 1 P P2 0.42795(3) 0.20047(3) -0.08919(4) 0.01079(10) Uani d . 1 P Ca 0.5 0.01580(3) -0.25 0.01066(11) Uani d S 1 Ca loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 0.0132(7) 0.0112(7) 0.0132(7) -0.0010(5) 0.0058(6) -0.0004(5) C2 0.0212(8) 0.0161(8) 0.0150(7) 0.0024(6) 0.0068(6) -0.0031(6) C3 0.0187(8) 0.0159(8) 0.0256(9) -0.0004(6) 0.0122(7) -0.0011(7) N1 0.0207(7) 0.0173(7) 0.0201(8) -0.0044(6) 0.0085(6) 0.0002(6) O1 0.0144(5) 0.0116(5) 0.0110(5) -0.0005(4) 0.0052(4) -0.0010(4) O2 0.0099(5) 0.0183(6) 0.0150(6) -0.0024(4) 0.0049(5) -0.0028(5) O3 0.0155(5) 0.0158(6) 0.0125(5) -0.0020(4) 0.0078(4) 0.0006(4) O4 0.0174(6) 0.0137(6) 0.0176(6) 0.0010(4) 0.0115(5) 0.0010(4) O5 0.0133(5) 0.0129(5) 0.0127(5) 0.0007(4) 0.0067(4) -0.0021(4) O6 0.0158(5) 0.0123(5) 0.0147(6) 0.0043(4) 0.0061(5) 0.0011(4) O7 0.0196(6) 0.0202(6) 0.0192(6) -0.0041(5) 0.0115(5) 0.0017(5) OW 0.0220(7) 0.0201(7) 0.0251(7) 0.0010(5) 0.0153(6) -0.0027(5) P1 0.00973(18) 0.01049(19) 0.01048(19) -0.00078(13) 0.00466(15) -0.00019(13) P2 0.01107(19) 0.01028(19) 0.01135(19) 0.00126(13) 0.00571(15) 0.00020(13) Ca 0.0107(2) 0.0119(2) 0.0103(2) 0.0 0.00580(16) 0.0 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0 0 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Ca Ca 0.2262 0.3064 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.006 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' P P 0.1023 0.0942 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag O7 C1 C2 . . 106.99(13) ? O7 C1 P1 . . 108.99(11) ? C2 C1 P1 . . 108.92(11) ? O7 C1 P2 . . 106.76(11) ? C2 C1 P2 . . 112.42(12) ? P1 C1 P2 . . 112.55(9) y C1 C2 C3 . . 114.53(15) ? C1 C2 H7 . . 108.6 ? C3 C2 H7 . . 108.6 ? C1 C2 H8 . . 108.6 ? C3 C2 H8 . . 108.6 ? H7 C2 H8 . . 107.6 ? N1 C3 C2 . . 112.45(15) ? N1 C3 H9 . . 109.1 ? C2 C3 H9 . . 109.1 ? N1 C3 H10 . . 109.1 ? C2 C3 H10 . . 109.1 ? H9 C3 H10 . . 107.8 ? C3 N1 H4 . . 110(2) ? C3 N1 H5 . . 104(2) ? H4 N1 H5 . . 108(3) ? C3 N1 H6 . . 109.6(19) ? H4 N1 H6 . . 110(3) ? H5 N1 H6 . . 116(3) ? P1 O1 Ca . . 142.95(7) ? P1 O2 H2 . . 118(3) ? P1 O3 Ca . 5_655 141.57(8) ? P2 O4 H3 . . 115(2) ? P2 O5 Ca . . 133.84(7) ? C1 O7 H1 . . 112(3) ? H11 OW H12 . . 104(4) ? O3 P1 O1 . . 116.73(7) y O3 P1 O2 . . 112.45(7) y O1 P1 O2 . . 104.92(7) y O3 P1 C1 . . 109.90(7) ? O1 P1 C1 . . 106.44(7) ? O2 P1 C1 . . 105.64(7) ? O6 P2 O5 . . 115.57(7) y O6 P2 O4 . . 107.33(7) y O5 P2 O4 . . 110.22(7) y O6 P2 C1 . . 108.11(7) ? O5 P2 C1 . . 107.99(7) ? O4 P2 C1 . . 107.32(7) ? O3 Ca O3 5_655 6 111.45(7) ? O3 Ca O1 5_655 . 90.12(4) ? O3 Ca O1 5_655 2_654 96.80(4) ? O1 Ca O1 . 2_654 167.72(6) ? O3 Ca O5 5_655 2_654 163.63(5) ? O1 Ca O5 . 2_654 89.02(4) ? O3 Ca O5 5_655 . 84.88(4) ? O1 Ca O5 . . 81.48(4) ? O1 Ca O5 2_654 . 89.02(4) ? O5 Ca O5 2_654 . 78.83(6) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag C1 O7 . 1.450(2) ? C1 C2 . 1.543(2) ? C1 P1 . 1.8463(17) ? C1 P2 . 1.8507(17) ? C2 C3 . 1.547(3) ? C2 H7 . 0.99 ? C2 H8 . 0.99 ? C3 N1 . 1.491(2) ? C3 H9 . 0.99 ? C3 H10 . 0.99 ? N1 H4 . 0.90(3) ? N1 H5 . 1.00(4) ? N1 H6 . 0.91(3) ? O1 P1 . 1.5220(12) y O2 P1 . 1.5660(13) y O2 H2 . 0.68(4) ? O3 P1 . 1.4965(12) y O4 P2 . 1.5750(13) y O4 H3 . 0.79(3) ? O5 P2 . 1.5167(12) y O6 P2 . 1.5039(13) y O7 H1 . 0.94(5) ? OW H11 . 0.76(4) ? OW H12 . 0.80(4) ? Ca O3 5_655 2.2878(12) y Ca O1 2_654 2.3080(12) y Ca O5 2_654 2.3871(12) y loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA C3 H9 O6 . 0.99 2.46 3.180(2) 129 N1 H4 OW . 0.90(3) 1.95(3) 2.838(2) 171(3) N1 H5 O7 . 1.00(4) 1.93(4) 2.692(2) 132(3) O4 H3 O1 5_655 0.79(3) 1.77(3) 2.5476(18) 167(3) O7 H1 O5 2_654 0.94(5) 1.86(5) 2.7655(19) 161(4) O2 H2 O6 8_556 0.68(4) 1.86(4) 2.5380(18) 174(5) N1 H6 O5 8_556 0.91(3) 2.10(3) 2.970(2) 159(3) N1 H5 O2 7_655 1.00(4) 2.20(4) 2.964(2) 133(3) OW H11 O6 5_665 0.76(4) 1.95(4) 2.7010(19) 176(4) OW H12 O4 3 0.80(4) 2.18(4) 2.979(2) 171(3) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag O7 C1 C2 C3 . . 34.65(19) y P1 C1 C2 C3 . . 152.32(13) ? P2 C1 C2 C3 . . -82.24(17) ? C1 C2 C3 N1 . . -72.1(2) y Ca O3 P1 O1 5_655 . -25.94(15) ? Ca O3 P1 O2 5_655 . -147.28(11) ? Ca O3 P1 C1 5_655 . 95.34(13) ? Ca O1 P1 O3 . . 117.08(12) ? Ca O1 P1 O2 . . -117.69(12) ? Ca O1 P1 C1 . . -6.00(14) ? O7 C1 P1 O3 . . 167.89(10) ? C2 C1 P1 O3 . . 51.49(13) ? P2 C1 P1 O3 . . -73.88(10) ? O7 C1 P1 O1 . . -64.84(12) ? C2 C1 P1 O1 . . 178.76(11) ? P2 C1 P1 O1 . . 53.39(10) ? O7 C1 P1 O2 . . 46.35(13) ? C2 C1 P1 O2 . . -70.05(13) ? P2 C1 P1 O2 . . 164.58(8) ? Ca O5 P2 O6 . . 159.00(9) ? Ca O5 P2 O4 . . -79.13(11) ? Ca O5 P2 C1 . . 37.82(11) ? O7 C1 P2 O6 . . -74.87(12) ? C2 C1 P2 O6 . . 42.14(14) ? P1 C1 P2 O6 . . 165.59(8) ? O7 C1 P2 O5 . . 50.83(12) ? C2 C1 P2 O5 . . 167.85(12) ? P1 C1 P2 O5 . . -68.70(10) ? O7 C1 P2 O4 . . 169.64(10) ? C2 C1 P2 O4 . . -73.34(13) ? P1 C1 P2 O4 . . 50.10(10) ? P1 O1 Ca O3 . 5_655 -103.94(12) ? P1 O1 Ca O3 . 6 144.44(12) ? P1 O1 Ca O1 . 2_654 20.55(11) ? P1 O1 Ca O5 . 2_654 59.72(12) ? P1 O1 Ca O5 . . -19.14(12) ? P2 O5 Ca O3 . 5_655 89.97(10) ? P2 O5 Ca O3 . 6 -86.01(18) ? P2 O5 Ca O1 . . -0.92(10) ? P2 O5 Ca O1 . 2_654 -173.11(10) ? P2 O5 Ca O5 . 2_654 -91.61(10) ?