#------------------------------------------------------------------------------ #$Date: 2015-01-23 12:30:19 +0000 (Fri, 23 Jan 2015) $ #$Revision: 130086 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/30/2013071.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2013071 loop_ _publ_author_name 'Papandreou, Nikolaos C.' 'Makedonopoulou, Stella' 'Antoniadou-Vyza, Ekaterini A.' 'Mavridis, Irene M.' 'Hamodrakas, Stavros J.' _publ_section_title ; 2,4-Diamino-5-(1-naphthyl)-3,5-diaza-1-azoniaspiro[5.5]undeca-1,3-diene chloride ; _journal_issue 12 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first o730 _journal_page_last o732 _journal_paper_doi 10.1107/S0108270102019108 _journal_volume 58 _journal_year 2002 _chemical_formula_moiety 'C18 H22 N5 + , Cl -' _chemical_formula_sum 'C18 H22 Cl N5' _chemical_formula_weight 343.86 _chemical_melting_point 402 _chemical_name_common '2,4-diamino-5-naphthalen-1-yl-3,5-diaza-1-azoniaspiro[5.5]undeca-1,3-diene Cl' _chemical_name_systematic ; 2,4-Diamino-5-(1-naphthyl)-3,5-diaza-1-azoniaspiro[5.5]undeca-1,3-diene chloride ; _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-I 2ya' _symmetry_space_group_name_H-M 'I 1 2/a 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 90 _cell_angle_beta 101.823(6) _cell_angle_gamma 90 _cell_formula_units_Z 8 _cell_length_a 24.862(4) _cell_length_b 7.3778(14) _cell_length_c 19.633(4) _cell_measurement_reflns_used 16 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 20 _cell_measurement_theta_min 11 _cell_volume 3524.8(11) _computing_cell_refinement 'Please provide missing information' _computing_data_collection 'Please provide missing information' _computing_data_reduction 'Please provide missing information' _computing_molecular_graphics 'Please provide missing information' _computing_publication_material 'Please provide missing information' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 1.00 _diffrn_measured_fraction_theta_max 1.00 _diffrn_measurement_device_type 'Syntex P2~1~' _diffrn_measurement_method \q/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54180 _diffrn_reflns_av_R_equivalents 0.015 _diffrn_reflns_av_sigmaI/netI 0.046 _diffrn_reflns_limit_h_max 28 _diffrn_reflns_limit_h_min -29 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 23 _diffrn_reflns_limit_l_min 0 _diffrn_reflns_number 3095 _diffrn_reflns_theta_full 65.05 _diffrn_reflns_theta_max 65.05 _diffrn_reflns_theta_min 3.63 _diffrn_standards_decay_% none _diffrn_standards_interval_count 97 _diffrn_standards_interval_time 60 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 1.983 _exptl_absorpt_correction_T_max 0.615 _exptl_absorpt_correction_T_min 0.405 _exptl_absorpt_correction_type '\y scan' _exptl_absorpt_process_details '(North et al., 1968)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.296 _exptl_crystal_density_meas ? _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 1456 _exptl_crystal_size_max 0.50 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.25 _refine_diff_density_max 0.55 _refine_diff_density_min -0.32 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.025 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 239 _refine_ls_number_reflns 2996 _refine_ls_number_restraints 82 _refine_ls_restrained_S_all 1.061 _refine_ls_R_factor_all 0.063 _refine_ls_R_factor_gt 0.052 _refine_ls_shift/su_max 0.009 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0784P)^2^+5.7970P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.143 _refine_ls_wR_factor_ref 0.155 _reflns_number_gt 2518 _reflns_number_total 2996 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file gg1139.cif _[local]_cod_data_source_block III _[local]_cod_cif_authors_sg_H-M 'I 2/a' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana The following automatic conversions were performed: '_exptl_crystal_density_meas' value 'not measured' was changed to '?' - the value is perceived as not measured. Automatic conversion script Id: cif_fix_values 3008 2015-01-20 13:52:24Z robertas ; _cod_database_code 2013071 _cod_database_fobs_code 2013071 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' 'x+1/2, -y, z' 'x+1/2, y+1/2, z+1/2' 'x+1, -y+1/2, z+1/2' '-x, -y, -z' '-x-1/2, y, -z' '-x+1/2, -y+1/2, -z+1/2' '-x, y+1/2, -z+1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol C1 0.56136(10) 0.2232(4) 0.00190(12) 0.0355(6) Uani d . 1 . . C N1 0.55678(10) 0.1314(3) 0.05788(11) 0.0447(6) Uani d . 1 . . N H1A 0.5771 0.1588 0.0975 0.068(11) Uiso calc R 1 . . H H1B 0.5335 0.0441 0.0548 0.044(8) Uiso calc R 1 . . H N2 0.52821(9) 0.1751(3) -0.05896(10) 0.0360(5) Uani d . 1 . . N C3 0.54354(10) 0.2333(3) -0.11681(13) 0.0343(5) Uani d . 1 . . C N3 0.51588(10) 0.1807(3) -0.17842(11) 0.0462(6) Uani d . 1 . . N H3A 0.4881 0.1094 -0.1813 0.056(10) Uiso calc R 1 . . H H3B 0.5256 0.2178 -0.2156 0.053(9) Uiso calc R 1 . . H N4 0.58752(9) 0.3416(3) -0.11374(10) 0.0369(5) Uani d . 1 . . N H4 0.6074 0.3359 -0.1447 0.15(2) Uiso calc R 1 . . H C5 0.60021(10) 0.4690(4) -0.05602(12) 0.0362(6) Uani d . 1 . . C N6 0.59798(9) 0.3601(3) 0.00714(10) 0.0392(5) Uani d . 1 . . N C7 0.62873(11) 0.4215(4) 0.07370(14) 0.0436(6) Uani d DU 1 . . C C8 0.60993(14) 0.5612(4) 0.10914(15) 0.0529(7) Uani d DU 1 . . C H8 0.5750 0.6079 0.0920 0.063(10) Uiso calc R 1 . . H C9 0.64139(15) 0.6354(5) 0.17002(17) 0.0673(9) Uani d DU 1 . . C H9 0.6280 0.7304 0.1929 0.090(14) Uiso calc R 1 . . H C10 0.69313(16) 0.5629(5) 0.19520(18) 0.0722(10) Uani d DU 1 . . C H10 0.7147 0.6111 0.2355 0.065(10) Uiso calc R 1 . . H C11 0.71399(11) 0.4176(4) 0.16133(14) 0.0510(7) Uani d DU 1 . . C C12 0.68026(12) 0.3433(4) 0.10014(14) 0.0505(7) Uani d DU 1 . . C C13 0.70035(13) 0.1917(4) 0.06703(16) 0.0550(8) Uani d DU 1 . . C H13 0.6795 0.1390 0.0272 0.057(10) Uiso calc R 1 . . H C14 0.75161(14) 0.1279(6) 0.0966(2) 0.0736(10) Uani d DU 1 . . C H14 0.7651 0.0288 0.0761 0.104(17) Uiso calc R 1 . . H C15 0.78433(16) 0.2021(7) 0.1551(2) 0.0875(13) Uani d DU 1 . . C H15 0.8190 0.1546 0.1728 0.14(2) Uiso calc R 1 . . H C16 0.76559(14) 0.3438(6) 0.1865(2) 0.0767(11) Uani d DU 1 . . C H16 0.7877 0.3936 0.2260 0.23(4) Uiso calc R 1 . . H C17 0.65773(11) 0.5475(4) -0.05267(14) 0.0424(6) Uani d . 1 . . C H17A 0.6685 0.6176 -0.0103 0.059(10) Uiso calc R 1 . . H H17B 0.6838 0.4491 -0.0512 0.041(8) Uiso calc R 1 . . H C18 0.65981(12) 0.6686(4) -0.11528(16) 0.0500(7) Uani d . 1 . . C H18A 0.6959 0.7238 -0.1092 0.051(8) Uiso calc R 1 . . H H18B 0.6542 0.5949 -0.1571 0.065(10) Uiso calc R 1 . . H C19 0.61629(15) 0.8168(4) -0.12421(19) 0.0599(8) Uani d . 1 . . C H19A 0.6169 0.8847 -0.1663 0.073(11) Uiso calc R 1 . . H H19B 0.6245 0.8998 -0.0852 0.065(11) Uiso calc R 1 . . H C20 0.55942(13) 0.7361(4) -0.12847(17) 0.0533(7) Uani d . 1 . . C H20A 0.5326 0.8330 -0.1321 0.065(10) Uiso calc R 1 . . H H20B 0.5499 0.6618 -0.1700 0.059(10) Uiso calc R 1 . . H C21 0.55736(12) 0.6215(4) -0.06496(15) 0.0439(6) Uani d . 1 . . C H21A 0.5210 0.5693 -0.0696 0.055(9) Uiso calc R 1 . . H H21B 0.5642 0.6978 -0.0238 0.058(9) Uiso calc R 1 . . H Cl1 0.58605(3) 0.39422(11) -0.27703(3) 0.0488(2) Uani d . 1 . . Cl loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 0.0384(13) 0.0408(14) 0.0286(12) -0.0008(11) 0.0094(10) -0.0001(10) N1 0.0499(13) 0.0569(14) 0.0269(11) -0.0140(11) 0.0073(9) 0.0037(10) N2 0.0401(11) 0.0399(12) 0.0275(10) -0.0054(9) 0.0061(8) -0.0001(9) C3 0.0399(13) 0.0327(12) 0.0295(12) -0.0007(10) 0.0053(10) 0.0005(10) N3 0.0583(14) 0.0513(14) 0.0274(11) -0.0160(12) 0.0053(10) 0.0021(10) N4 0.0433(12) 0.0407(12) 0.0281(10) -0.0059(10) 0.0107(9) -0.0025(9) C5 0.0412(13) 0.0400(14) 0.0275(12) -0.0070(11) 0.0069(10) -0.0014(10) N6 0.0433(12) 0.0471(13) 0.0263(10) -0.0109(10) 0.0054(9) 0.0002(9) C7 0.0449(14) 0.0502(16) 0.0350(13) -0.0029(12) 0.0063(11) -0.0005(12) C8 0.0652(19) 0.0539(17) 0.0418(15) 0.0043(15) 0.0161(13) -0.0074(13) C9 0.084(2) 0.070(2) 0.0453(17) -0.0040(19) 0.0093(16) -0.0110(16) C10 0.084(2) 0.082(2) 0.0457(18) -0.020(2) 0.0011(17) -0.0031(17) C11 0.0443(15) 0.069(2) 0.0369(14) -0.0139(14) 0.0016(12) 0.0106(13) C12 0.0445(15) 0.0653(19) 0.0421(15) -0.0043(14) 0.0093(12) 0.0155(14) C13 0.0553(17) 0.0624(19) 0.0508(17) 0.0167(15) 0.0188(14) 0.0122(15) C14 0.062(2) 0.093(3) 0.070(2) 0.0258(19) 0.0233(17) 0.031(2) C15 0.054(2) 0.129(4) 0.080(3) 0.011(2) 0.0142(18) 0.050(3) C16 0.0477(18) 0.113(3) 0.068(2) -0.0075(19) 0.0080(16) 0.035(2) C17 0.0403(14) 0.0472(15) 0.0400(14) -0.0092(12) 0.0090(11) -0.0006(12) C18 0.0523(17) 0.0504(17) 0.0510(17) -0.0133(13) 0.0188(13) 0.0006(14) C19 0.076(2) 0.0434(17) 0.066(2) -0.0032(16) 0.0273(17) 0.0081(16) C20 0.0618(18) 0.0460(16) 0.0539(17) 0.0094(15) 0.0159(14) 0.0071(14) C21 0.0482(16) 0.0424(15) 0.0435(15) -0.0009(12) 0.0153(12) -0.0036(12) Cl1 0.0519(4) 0.0653(5) 0.0288(3) 0.0050(3) 0.0072(3) 0.0036(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0311 0.0180 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.3639 0.7018 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag N1 C1 N2 117.5(2) yes N1 C1 N6 119.6(2) yes N2 C1 N6 122.9(2) yes C1 N2 C3 115.9(2) yes N2 C3 N3 119.8(2) yes N2 C3 N4 121.5(2) yes N3 C3 N4 118.7(2) yes C3 N4 C5 117.6(2) yes N4 C5 N6 105.1(2) yes N4 C5 C17 109.2(2) yes N6 C5 C17 111.2(2) yes N4 C5 C21 110.5(2) yes N6 C5 C21 110.3(2) yes C17 C5 C21 110.3(2) yes C1 N6 C5 118.7(2) yes C1 N6 C7 121.8(2) yes C5 N6 C7 118.8(2) yes C8 C7 N6 121.3(3) no C12 C7 N6 118.6(2) no C8 C7 C12 119.9(3) no C7 C8 C9 122.4(3) no C10 C9 C8 118.0(3) no C9 C10 C11 121.8(3) no C1 N1 H1A 120.0 no C1 N1 H1B 120.0 no H1A N1 H1B 120.0 no C3 N3 H3A 120.0 no C3 N3 H3B 120.0 no H3A N3 H3B 120.0 no C3 N4 H4 121.2 no C5 N4 H4 121.2 no C7 C8 H8 118.8 no C9 C8 H8 118.8 no C10 C9 H9 121.0 no C8 C9 H9 121.0 no C9 C10 H10 119.1 no C11 C10 H10 119.1 no C16 C11 C10 122.1(3) no C16 C11 C12 119.3(3) no C10 C11 C12 118.6(3) no C7 C12 C11 119.2(3) no C7 C12 C13 122.0(3) no C11 C12 C13 118.9(3) no C14 C13 C12 117.1(3) no C14 C13 H13 121.5 no C12 C13 H13 121.5 no C13 C14 C15 123.8(4) no C13 C14 H14 118.1 no C15 C14 H14 118.1 no C16 C15 C14 119.4(4) no C16 C15 H15 120.3 no C14 C15 H15 120.3 no C15 C16 C11 121.6(4) no C15 C16 H16 119.2 no C11 C16 H16 119.2 no C18 C17 C5 111.8(2) no C18 C17 H17A 109.3 no C5 C17 H17A 109.3 no C18 C17 H17B 109.3 no C5 C17 H17B 109.3 no H17A C17 H17B 107.9 no C19 C18 C17 111.8(2) no C19 C18 H18A 109.3 no C17 C18 H18A 109.3 no C19 C18 H18B 109.3 no C17 C18 H18B 109.3 no H18A C18 H18B 107.9 no C18 C19 C20 110.8(3) no C18 C19 H19A 109.5 no C20 C19 H19A 109.5 no C18 C19 H19B 109.5 no C20 C19 H19B 109.5 no H19A C19 H19B 108.1 no C21 C20 C19 111.1(3) no C21 C20 H20A 109.4 no C19 C20 H20A 109.4 no C21 C20 H20B 109.4 no C19 C20 H20B 109.4 no H20A C20 H20B 108.0 no C20 C21 C5 111.3(2) no C20 C21 H21A 109.4 no C5 C21 H21A 109.4 no C20 C21 H21B 109.4 no C5 C21 H21B 109.4 no H21A C21 H21B 108.0 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag C1 N1 . 1.316(3) yes C1 N2 . 1.352(3) yes C1 N6 . 1.350(3) yes N2 C3 . 1.340(3) yes N3 C3 . 1.321(3) yes N4 C3 . 1.346(3) yes N4 C5 . 1.456(3) yes N6 C5 . 1.488(3) yes N6 C7 . 1.445(3) yes C5 C17 . 1.532(4) yes C5 C21 . 1.535(4) yes C7 C8 . 1.378(4) no C7 C12 . 1.404(4) no C8 C9 . 1.399(4) no C9 C10 . 1.387(4) no C10 C11 . 1.414(4) no N1 H1A . 0.8600 no N1 H1B . 0.8600 no N3 H3A . 0.8600 no N3 H3B . 0.8600 no N4 H4 . 0.8600 no C8 H8 . 0.9300 no C9 H9 . 0.9300 no C10 H10 . 0.9300 no C11 C16 . 1.388(4) no C11 C12 . 1.427(4) no C12 C13 . 1.434(4) no C13 C14 . 1.371(4) no C13 H13 . 0.9300 no C14 C15 . 1.378(5) no C14 H14 . 0.9300 no C15 C16 . 1.344(5) no C15 H15 . 0.9300 no C16 H16 . 0.9300 no C17 C18 . 1.529(4) no C17 H17A . 0.9700 no C17 H17B . 0.9700 no C18 C19 . 1.523(5) no C18 H18A . 0.9700 no C18 H18B . 0.9700 no C19 C20 . 1.521(5) no C19 H19A . 0.9700 no C19 H19B . 0.9700 no C20 C21 . 1.516(4) no C20 H20A . 0.9700 no C20 H20B . 0.9700 no C21 H21A . 0.9700 no C21 H21B . 0.9700 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N1 H1A Cl1 4_455 0.86 2.46 3.179(2) 142 yes N1 H1B N2 5_655 0.86 2.24 3.098(3) 174 yes N3 H3A Cl1 8_644 0.86 2.44 3.278(2) 164 yes N3 H3B Cl1 . 0.86 2.48 3.264(2) 152 yes N4 H4 Cl1 . 0.86 2.58 3.222(2) 133 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag N1 C1 N2 C3 -162.1(2) no N6 C1 N2 C3 18.3(4) yes C1 N2 C3 N3 174.8(2) no C1 N2 C3 N4 -3.7(4) yes N3 C3 N4 C5 149.3(2) no N2 C3 N4 C5 -32.1(4) no C3 N4 C5 N6 48.0(3) yes C3 N4 C5 C17 167.4(2) no C3 N4 C5 C21 -71.0(3) no N1 C1 N6 C7 -6.3(4) no N2 C1 N6 C7 173.3(2) no N1 C1 N6 C5 -176.5(2) no N2 C1 N6 C5 3.1(4) no N4 C5 N6 C1 -33.9(3) no C17 C5 N6 C1 -152.0(2) no C21 C5 N6 C1 85.2(3) no N4 C5 N6 C7 155.6(2) no C17 C5 N6 C7 37.5(3) no C21 C5 N6 C7 -85.3(3) no C1 N6 C7 C8 -92.4(4) no C5 N6 C7 C8 77.8(3) no C1 N6 C7 C12 91.4(3) yes C5 N6 C7 C12 -98.4(3) no C12 C7 C8 C9 2.8(5) no N6 C7 C8 C9 -173.3(3) no C7 C8 C9 C10 -0.6(5) no C8 C9 C10 C11 -0.4(6) no C9 C10 C11 C16 -179.6(3) no C9 C10 C11 C12 -0.8(5) no C8 C7 C12 C11 -3.9(4) no N6 C7 C12 C11 172.3(3) no C8 C7 C12 C13 176.8(3) no N6 C7 C12 C13 -7.0(4) no C16 C11 C12 C7 -178.2(3) no C10 C11 C12 C7 2.9(4) no C16 C11 C12 C13 1.1(4) no C10 C11 C12 C13 -177.7(3) no C7 C12 C13 C14 179.0(3) no C11 C12 C13 C14 -0.3(4) no C12 C13 C14 C15 -0.7(5) no C13 C14 C15 C16 0.9(6) no C14 C15 C16 C11 -0.1(6) no C10 C11 C16 C15 177.9(4) no C12 C11 C16 C15 -0.9(5) no N4 C5 C17 C18 67.6(3) no N6 C5 C17 C18 -176.7(2) no C21 C5 C17 C18 -54.0(3) no C5 C17 C18 C19 54.0(3) no C17 C18 C19 C20 -54.7(4) no C18 C19 C20 C21 56.6(4) no C19 C20 C21 C5 -57.6(3) no N4 C5 C21 C20 -65.0(3) no N6 C5 C21 C20 179.2(2) no C17 C5 C21 C20 55.9(3) no