#------------------------------------------------------------------------------ #$Date: 2016-02-14 04:40:26 +0000 (Sun, 14 Feb 2016) $ #$Revision: 176432 $ #$URL: svn://www.crystallography.net/cod/cif/2/01/30/2013074.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2013074 loop_ _publ_author_name 'Lynch, Daniel E.' 'Ian McClenaghan' _publ_section_title ; 2-(Pyrrolidin-1-yl)-1,4-naphthoquinone and 2-phenylsulfanyl-3-(pyrrolidin-1-yl)-1,4-naphthoquinone ; _journal_issue 12 _journal_name_full 'Acta Crystallographica Section C' _journal_page_first o704 _journal_page_last o707 _journal_paper_doi 10.1107/S0108270102019194 _journal_volume 58 _journal_year 2002 _chemical_formula_iupac 'C14 H12.95 Cl0.05 N O2' _chemical_formula_moiety 'C14 H12.95 Cl0.05 N O2' _chemical_formula_sum 'C14 H12.95 Cl0.05 N O2' _chemical_formula_weight 228.98 _chemical_name_systematic ; 2-(pyrrolidin-1-yl)-1,4-naphthoquinone ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 90 _cell_angle_beta 118.896(2) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 11.5759(5) _cell_length_b 9.3063(4) _cell_length_c 11.5275(4) _cell_measurement_reflns_used 4944 _cell_measurement_temperature 150(2) _cell_measurement_theta_max 27.5 _cell_measurement_theta_min 2.9 _cell_volume 1087.23(8) _computing_cell_refinement 'DENZO and COLLECT' _computing_data_collection 'DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998)' _computing_data_reduction 'DENZO and COLLECT' _computing_molecular_graphics 'PLUTON94 (Spek, 1994) and PLATON97 (Spek, 1997)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 150(2) _diffrn_detector_area_resol_mean 9.091 _diffrn_measured_fraction_theta_full 0.99 _diffrn_measured_fraction_theta_max 0.99 _diffrn_measurement_device_type 'Bruker--Nonius KappaCCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'Bruker--Nonius FR591 rotating anode' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0513 _diffrn_reflns_av_sigmaI/netI 0.0597 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min -14 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 8163 _diffrn_reflns_theta_full 27.45 _diffrn_reflns_theta_max 27.5 _diffrn_reflns_theta_min 3.0 _diffrn_standards_decay_% 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.106 _exptl_absorpt_correction_T_max 0.984 _exptl_absorpt_correction_T_min 0.974 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SORTAV; Blessing, 1995)' _exptl_crystal_colour red _exptl_crystal_density_diffrn 1.399 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 483.2 _exptl_crystal_size_max 0.25 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.15 _refine_diff_density_max 0.20 _refine_diff_density_min -0.25 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.011 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 168 _refine_ls_number_reflns 2470 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.011 _refine_ls_R_factor_all 0.0814 _refine_ls_R_factor_gt 0.0472 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean <0.001 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0664P)^2^] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1100 _refine_ls_wR_factor_ref 0.1230 _reflns_number_gt 1680 _reflns_number_total 2470 _reflns_threshold_expression I>2\s(I) _cod_data_source_file gg1143.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_exptl_absorpt_correction_type' value 'Multi-scan' changed to 'multi-scan' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 1087.24(8) _cod_original_sg_symbol_Hall -P2ybc _cod_original_sg_symbol_H-M 'P 21/c' _cod_database_code 2013074 _cod_database_fobs_code 2013074 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' 'x, -y+1/2, z+1/2' '-x, -y, -z' '-x, y-1/2, -z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol C1 0.52140(15) 0.26876(14) 0.46522(15) 0.0278(4) Uani d . 1 . . C O1 0.43934(11) 0.18159(11) 0.45656(12) 0.0438(3) Uani d . 1 . . O C2 0.48636(14) 0.38930(13) 0.36577(15) 0.0252(3) Uani d . 1 . . C N21 0.36411(12) 0.39415(11) 0.26238(12) 0.0272(3) Uani d . 1 . . N C22 0.33133(15) 0.49677(16) 0.15344(15) 0.0323(4) Uani d . 1 . . C H221 0.4002 0.4970 0.1260 0.040 Uiso calc R 1 . . H H222 0.3217 0.5953 0.1800 0.040 Uiso calc R 1 . . H C23 0.20144(15) 0.44198(17) 0.04296(16) 0.0356(4) Uani d . 1 . . C H231 0.2159 0.3690 -0.0112 0.044 Uiso calc R 1 . . H H232 0.1479 0.5215 -0.0152 0.044 Uiso calc R 1 . . H C24 0.13528(15) 0.37621(16) 0.11650(16) 0.0358(4) Uani d . 1 . . C H241 0.0681 0.3045 0.0607 0.045 Uiso calc R 1 . . H H242 0.0926 0.4511 0.1439 0.045 Uiso calc R 1 . . H C25 0.24864(14) 0.30497(16) 0.23683(16) 0.0310(4) Uani d . 1 . . C H251 0.2326 0.3060 0.3138 0.039 Uiso calc R 1 . . H H252 0.2611 0.2044 0.2171 0.039 Uiso calc R 1 . . H C3 0.58268(15) 0.48763(16) 0.38466(15) 0.0277(4) Uani d . 1 . . C H3 0.5683(18) 0.557(2) 0.331(2) 0.038(6) Uiso d P 0.95 . . H Cl3 0.5440(11) 0.6465(12) 0.3192(12) 0.064(3) Uani d P 0.05 . . Cl C4 0.71640(14) 0.47800(14) 0.48609(14) 0.0275(4) Uani d . 1 . . C O4 0.80046(11) 0.56867(11) 0.49935(11) 0.0374(3) Uani d . 1 . . O C5 0.88558(15) 0.33602(15) 0.67609(15) 0.0307(4) Uani d . 1 . . C H5 0.9509 0.4012 0.6808 0.038 Uiso calc R 1 . . H C6 0.92180(16) 0.22360(15) 0.76582(16) 0.0336(4) Uani d . 1 . . C H6 1.0114 0.2118 0.8316 0.042 Uiso calc R 1 . . H C7 0.82651(16) 0.12848(15) 0.75899(16) 0.0329(4) Uani d . 1 . . C H7 0.8506 0.0525 0.8215 0.041 Uiso calc R 1 . . H C8 0.69593(15) 0.14390(14) 0.66113(16) 0.0312(4) Uani d . 1 . . C H8 0.6311 0.0775 0.6555 0.039 Uiso calc R 1 . . H C9 0.66050(14) 0.25695(13) 0.57148(14) 0.0256(3) Uani d . 1 . . C C10 0.75551(14) 0.35442(14) 0.57971(15) 0.0254(3) Uani d . 1 . . C loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 0.0295(9) 0.0254(7) 0.0300(9) -0.0028(6) 0.0157(7) -0.0031(6) O1 0.0310(7) 0.0400(6) 0.0505(8) -0.0088(5) 0.0118(6) 0.0120(6) C2 0.0266(8) 0.0247(7) 0.0251(8) -0.0004(6) 0.0131(7) -0.0035(6) N21 0.0230(7) 0.0301(6) 0.0246(7) -0.0009(5) 0.0085(6) 0.0009(5) C22 0.0307(9) 0.0360(8) 0.0275(9) 0.0034(7) 0.0119(8) 0.0047(7) C23 0.0272(9) 0.0478(9) 0.0273(9) 0.0035(7) 0.0097(7) 0.0001(7) C24 0.0255(9) 0.0472(10) 0.0318(10) 0.0032(7) 0.0114(8) -0.0034(7) C25 0.0254(9) 0.0355(8) 0.0315(9) -0.0054(6) 0.0134(7) -0.0056(7) C3 0.0309(9) 0.0258(8) 0.0248(9) -0.0019(6) 0.0122(7) 0.0019(7) Cl3 0.050(6) 0.068(7) 0.071(8) 0.001(5) 0.026(6) 0.023(6) C4 0.0305(9) 0.0277(7) 0.0251(8) -0.0054(6) 0.0141(7) -0.0043(6) O4 0.0342(7) 0.0374(6) 0.0344(7) -0.0141(5) 0.0116(6) 0.0005(5) C5 0.0295(9) 0.0322(8) 0.0293(9) -0.0034(6) 0.0133(8) -0.0035(7) C6 0.0282(9) 0.0386(8) 0.0282(9) 0.0049(7) 0.0089(7) -0.0022(7) C7 0.0383(10) 0.0310(8) 0.0282(9) 0.0070(7) 0.0153(8) 0.0055(7) C8 0.0328(9) 0.0300(8) 0.0323(9) -0.0001(6) 0.0169(8) 0.0011(7) C9 0.0271(8) 0.0250(7) 0.0249(8) -0.0005(6) 0.0127(7) -0.0026(6) C10 0.0275(8) 0.0260(7) 0.0234(8) -0.0020(6) 0.0130(7) -0.0050(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O1 C1 C9 120.78(13) O1 C1 C2 121.32(14) C9 C1 C2 117.87(12) N21 C2 C3 123.03(13) N21 C2 C1 118.71(12) C3 C2 C1 118.25(14) C2 N21 C22 120.41(12) C2 N21 C25 128.57(13) C22 N21 C25 111.01(12) C22 C23 C24 103.29(12) C22 C23 H231 111.1 C24 C23 H231 111.1 C22 C23 H232 111.1 C24 C23 H232 111.1 H231 C23 H232 109.1 N21 C22 C23 103.92(11) N21 C22 H221 111.0 C23 C22 H221 111.0 N21 C22 H222 111.0 C23 C22 H222 111.0 H221 C22 H222 109.0 C23 C24 C25 103.79(12) C23 C24 H241 111.0 C25 C24 H241 111.0 C23 C24 H242 111.0 C25 C24 H242 111.0 H241 C24 H242 109.0 N21 C25 C24 103.60(12) N21 C25 H251 111.0 C24 C25 H251 111.0 N21 C25 H252 111.0 C24 C25 H252 111.0 H251 C25 H252 109.0 C2 C3 C4 124.40(14) C2 C3 Cl3 120.8(4) C4 C3 Cl3 112.7(4) C2 C3 H3 121.9(13) C4 C3 H3 113.4(13) O4 C4 C3 122.40(13) O4 C4 C10 119.35(13) C3 C4 C10 118.25(13) C10 C5 C6 120.81(14) C10 C5 H5 119.6 C6 C5 H5 119.6 C5 C6 C7 119.61(15) C5 C6 H6 120.2 C7 C6 H6 120.2 C6 C7 C8 120.25(14) C6 C7 H7 119.9 C8 C7 H7 119.9 C7 C8 C9 119.74(14) C7 C8 H8 120.1 C9 C8 H8 120.1 C8 C9 C10 120.16(14) C8 C9 C1 118.85(13) C10 C9 C1 120.96(13) C5 C10 C9 119.42(13) C5 C10 C4 120.60(13) C9 C10 C4 119.98(13) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag C1 O1 . 1.2160(16) ? C1 C9 . 1.483(2) ? C1 C2 . 1.513(2) ? C2 N21 . 1.3398(19) ? C2 C3 . 1.376(2) ? N21 C22 . 1.4740(18) ? N21 C25 . 1.4770(17) ? C23 C22 . 1.514(2) ? C23 C24 . 1.519(2) ? C23 H231 . 0.99 ? C23 H232 . 0.99 ? C22 H221 . 0.99 ? C22 H222 . 0.99 ? C24 C25 . 1.525(2) ? C24 H241 . 0.99 ? C24 H242 . 0.99 ? C25 H251 . 0.99 ? C25 H252 . 0.99 ? C3 C4 . 1.422(2) ? C3 Cl3 . 1.621(11) ? C3 H3 . 0.85(2) ? Cl3 H3 . 0.871(17) ? C4 O4 . 1.2404(16) ? C4 C10 . 1.490(2) ? C5 C10 . 1.383(2) ? C5 C6 . 1.386(2) ? C5 H5 . 0.95 ? C6 C7 . 1.387(2) ? C6 H6 . 0.95 ? C7 C8 . 1.389(2) ? C7 H7 . 0.95 ? C8 C9 . 1.390(2) ? C8 H8 . 0.95 ? C9 C10 . 1.3931(19) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag C6 H6 O4 4_757 0.95 2.49 3.366(2) 153 yes C25 H252 O4 4_656 0.99 2.57 3.328(2) 133 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C1 C2 N21 C22 -171.20(10) yes C2 N21 C22 C23 164.80(10) yes N21 C22 C23 C24 32.1(2) yes C22 C23 C24 C25 -38.3(2) yes C23 C24 C25 N21 29.3(2) yes C24 C25 N21 C2 171.60(10) yes C25 N21 C2 C1 7.6(2) yes O1 C1 C2 N21 -3.8(2) ? C9 C1 C2 N21 174.12(12) ? O1 C1 C2 C3 177.33(14) ? C9 C1 C2 C3 -4.73(19) ? C3 C2 N21 C22 7.6(2) ? C3 C2 N21 C25 -173.60(13) ? C25 N21 C22 C23 -14.17(15) ? C22 N21 C25 C24 -9.51(15) ? N21 C2 C3 C4 -173.85(13) ? C1 C2 C3 C4 5.0(2) ? N21 C2 C3 Cl3 23.7(6) ? C1 C2 C3 Cl3 -157.5(5) ? C2 C3 C4 O4 179.63(14) ? Cl3 C3 C4 O4 -16.6(5) ? C2 C3 C4 C10 -0.8(2) ? Cl3 C3 C4 C10 163.0(5) ? C10 C5 C6 C7 -0.1(2) ? C5 C6 C7 C8 1.3(2) ? C6 C7 C8 C9 -1.3(2) ? C7 C8 C9 C10 0.0(2) ? C7 C8 C9 C1 178.09(13) ? O1 C1 C9 C8 0.2(2) ? C2 C1 C9 C8 -177.70(12) ? O1 C1 C9 C10 178.33(14) ? C2 C1 C9 C10 0.39(19) ? C6 C5 C10 C9 -1.2(2) ? C6 C5 C10 C4 178.13(13) ? C8 C9 C10 C5 1.3(2) ? C1 C9 C10 C5 -176.80(13) ? C8 C9 C10 C4 -178.11(13) ? C1 C9 C10 C4 3.8(2) ? O4 C4 C10 C5 -3.6(2) ? C3 C4 C10 C5 176.80(13) ? O4 C4 C10 C9 175.79(13) ? C3 C4 C10 C9 -3.8(2) ?