#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2101920.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2101920 loop_ _publ_author_name 'Yeo, L.' 'Harris, K. D. M.' _publ_section_title ; Definitive Structural Characterization of the Conventional Low-Temperature Host Structure in Urea Inclusion Compounds ; _journal_issue 5 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 822 _journal_page_last 830 _journal_volume 53 _journal_year 1997 _chemical_formula_moiety 'C1 H4 N2 O1 , 0.09C12 H24 Br2' _chemical_formula_sum 'C2.08 H6.16 Br0.18 N2 O' _chemical_formula_weight 84 _chemical_name_systematic ; ? ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _audit_creation_method SHELXL _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 12 _cell_length_a 10.930(2) _cell_length_b 14.133(3) _cell_length_c 8.186(2) _cell_measurement_reflns_used ' 6710 (post-refined using complete data set).' _cell_measurement_temperature 293(2) _cell_measurement_theta_max 50.58 _cell_measurement_theta_min 2.5 _cell_volume 1264.5(5) _computing_cell_refinement 'R-Axis II software (Rigaku, 1994)' _computing_data_collection 'R-Axis II software (Rigaku, 1994)' _computing_data_reduction ' TeXsan (Molecular Structure Corporation,1993)' _computing_molecular_graphics 'Biosym, InsightII' _computing_publication_material 'SHELXL-93 (Sheldrick, 1993)' _computing_structure_refinement 'SHELXL-93 (Sheldrick, 1993)' _computing_structure_solution ' TeXsan (Molecular Structure Corporation,1993)' _diffrn_ambient_temperature 293(2) _diffrn_measurement_device 'Rigaku R-Axis II area detector' _diffrn_measurement_method 'image plate scanning' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'rotating anode' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71069 _diffrn_reflns_av_R_equivalents 0.0731 _diffrn_reflns_av_sigmaI/netI 0.0502 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_h_min -12 _diffrn_reflns_limit_k_max 16 _diffrn_reflns_limit_k_min -16 _diffrn_reflns_limit_l_max 9 _diffrn_reflns_limit_l_min -9 _diffrn_reflns_number 6610 _diffrn_reflns_theta_max 25.29 _diffrn_reflns_theta_min 2.88 _exptl_absorpt_coefficient_mu 1.217 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.388 _exptl_crystal_density_meas 'not measured' _exptl_crystal_description 'Hexagonal needle' _exptl_crystal_F_000 552 _exptl_crystal_size_max 0.4 _exptl_crystal_size_mid 0.3 _exptl_crystal_size_min 0.3 _refine_diff_density_max 0.501 _refine_diff_density_min -0.381 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack -3.(7) _refine_ls_extinction_coef none _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all 1.036 _refine_ls_goodness_of_fit_obs 1.068 _refine_ls_hydrogen_treatment ; hydrogen atoms were added to the urea molecules according to standard geometry and refined using a "riding" model. The Uiso of each hydrogen was refined as 1.2 times the equivalent isotropic atomic displacement of the nitrogen atom to which it is attached. ; _refine_ls_matrix_type full _refine_ls_number_parameters 137 _refine_ls_number_reflns 2195 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.036 _refine_ls_restrained_S_obs 1.068 _refine_ls_R_factor_all 0.1337 _refine_ls_R_factor_obs 0.1234 _refine_ls_shift/esd_max 0.282 _refine_ls_shift/esd_mean 0.048 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w=1/[\s^2^(Fo^2^)+(0.1876P)^2^+3.5933P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_all 0.3448 _refine_ls_wR_factor_obs 0.3348 _reflns_number_observed 1940 _reflns_number_total 2195 _reflns_observed_criterion >2sigma(I) _[local]_cod_data_source_file ha0155.cif _[local]_cod_data_source_block DB12lt _[local]_cod_chemical_formula_sum_orig 'C2.08 H6.16 Br0.18 N2 O1' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 1264.5(4) _cod_database_code 2101920 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' 'x+1/2, -y+1/2, -z' '-x, y+1/2, -z+1/2' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.022(2) 0.047(2) 0.039(2) -0.005(2) -0.001(2) -0.009(2) O2 0.028(2) 0.042(3) 0.036(3) -0.008(2) -0.001(2) 0.004(2) O3 0.022(2) 0.046(2) 0.037(2) -0.004(2) -0.001(2) -0.002(2) N11 0.024(3) 0.058(3) 0.032(3) -0.014(2) 0.001(2) -0.011(3) N31 0.024(3) 0.048(3) 0.036(3) -0.003(2) 0.003(2) 0.018(2) N12 0.012(3) 0.078(4) 0.043(3) -0.005(2) -0.001(2) -0.009(3) N21 0.015(2) 0.026(2) 0.069(4) 0.003(2) -0.002(2) 0.004(3) N22 0.011(3) 0.065(4) 0.073(4) 0.008(2) 0.001(2) 0.011(3) N32 0.021(3) 0.065(4) 0.037(3) -0.008(2) 0.000(2) 0.008(3) C1 0.022(3) 0.052(4) 0.033(3) -0.014(3) -0.002(3) 0.003(3) C2 0.020(3) 0.044(3) 0.040(4) -0.021(2) 0.006(3) 0.006(3) C3 0.032(3) 0.028(3) 0.032(3) -0.016(2) -0.001(3) 0.001(2) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol O1 0.3348(4) 0.0895(3) 1.0370(5) 0.0360(10) Uani d . 1 O O2 1.0001(3) 0.0683(3) 1.0150(5) 0.0356(11) Uani d . 1 O O3 0.6673(4) 0.0913(3) 0.9911(5) 0.0352(10) Uani d . 1 O N11 0.2291(5) 0.0075(4) 0.8414(6) 0.0377(14) Uani d . 1 N H11A 0.1614(5) 0.0136(4) 0.8938(6) 0.045 Uiso calc R 1 H H11B 0.2307(5) -0.0224(4) 0.7500(6) 0.045 Uiso calc R 1 H N31 0.5629(4) 0.0344(4) 1.2098(7) 0.0358(13) Uani d . 1 N H31A 0.4949(4) 0.0560(4) 1.1726(7) 0.043 Uiso calc R 1 H H31B 0.5644(4) 0.0043(4) 1.3011(7) 0.043 Uiso calc R 1 H N12 0.4365(4) 0.0307(5) 0.8187(7) 0.044(2) Uani d . 1 N H12A 0.5047(4) 0.0520(5) 0.8560(7) 0.053 Uiso calc R 1 H H12B 0.4348(4) 0.0004(5) 0.7276(7) 0.053 Uiso calc R 1 H N21 1.1029(4) 0.2074(3) 1.0258(7) 0.0367(13) Uani d . 1 N H21A 1.1705(4) 0.1782(3) 1.0445(7) 0.044 Uiso calc R 1 H H21B 1.1020(4) 0.2681(3) 1.0197(7) 0.044 Uiso calc R 1 H N22 0.8951(4) 0.2054(4) 0.9812(8) 0.050(2) Uani d . 1 N H22A 0.8272(4) 0.1753(4) 0.9709(8) 0.060 Uiso calc R 1 H H22B 0.8961(4) 0.2662(4) 0.9755(8) 0.060 Uiso calc R 1 H N32 0.7702(5) 0.0130(4) 1.1898(7) 0.0409(15) Uani d . 1 N H32A 0.8382(5) 0.0209(4) 1.1388(7) 0.049 Uiso calc R 1 H H32B 0.7691(5) -0.0168(4) 1.2814(7) 0.049 Uiso calc R 1 H C1 0.3325(5) 0.0448(5) 0.9026(7) 0.0356(14) Uani d . 1 C C2 0.9987(5) 0.1580(5) 1.0060(7) 0.0347(15) Uani d . 1 C C3 0.6656(6) 0.0473(4) 1.1263(7) 0.0307(13) Uani d . 1 C C4 0.836(2) 0.7594(13) 0.018(2) 0.130(5) Uiso d . 1 C C5 0.474(3) 0.7328(17) -0.029(3) 0.162(8) Uiso d . 1 C C6 0.633(3) 0.7553(17) 0.008(3) 0.152(8) Uiso d . 1 C C7 0.562(3) 0.747(2) -0.007(4) 0.164(9) Uiso d . 1 C C8 0.762(4) 0.722(3) -0.088(6) 0.30(2) Uiso d . 1 C C9 0.737(3) 0.7599(15) 0.027(3) 0.156(8) Uiso d . 1 C C10 0.940(4) 0.710(3) -0.051(5) 0.276(16) Uiso d . 1 C loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag O1 C1 N11 . . 122.3(5) y O1 C1 N12 . . 120.1(5) y N11 C1 N12 . . 117.6(5) y O2 C2 N22 . . 121.4(5) y O2 C2 N21 . . 120.0(5) y N22 C2 N21 . . 118.5(6) y O3 C3 N31 . . 122.0(6) y O3 C3 N32 . . 120.0(5) y N31 C3 N32 . . 118.0(5) y C9 C4 C10 . . 144.(3) ? C9 C4 C8 . . 55.(2) ? C10 C4 C8 . . 92.(2) ? C9 C4 C5 . 3_565 172.(3) ? C10 C4 C5 . 3_565 43.5(17) ? C8 C4 C5 . 3_565 133.(3) ? C7 C5 C10 . 3_465 94.(3) ? C7 C5 C4 . 3_465 159.(3) ? C10 C5 C4 3_465 3_465 65.(3) ? C7 C5 C6 . . 2.(2) ? C10 C5 C6 3_465 . 95.(3) ? C4 C5 C6 3_465 . 161.(2) ? C7 C6 C9 . . 175.(4) ? C7 C6 C8 . . 135.(4) ? C9 C6 C8 . . 41.(2) ? C7 C6 C5 . . 2.(3) ? C9 C6 C5 . . 173.(3) ? C8 C6 C5 . . 133.(2) ? C6 C7 C5 . . 176.(5) ? C6 C7 C10 . 3_465 138.(4) ? C5 C7 C10 . 3_465 46.(2) ? C6 C7 C9 . . 3.(3) ? C5 C7 C9 . . 173.(3) ? C10 C7 C9 3_465 . 141.(3) ? C9 C8 C4 . . 53.(2) ? C9 C8 C6 . . 42.(2) ? C4 C8 C6 . . 95.(3) ? C4 C9 C6 . . 168.(4) ? C4 C9 C8 . . 72.(3) ? C6 C9 C8 . . 96.(3) ? C4 C9 C7 . . 167.(3) ? C6 C9 C7 . . 2.2(18) ? C8 C9 C7 . . 95.(3) ? C5 C10 C4 3_565 . 71.(3) ? C5 C10 C7 3_565 3_565 41.(2) ? C4 C10 C7 . 3_565 112.(3) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O1 C1 . 1.268(7) y O2 C2 . 1.271(8) y O3 C3 . 1.270(7) y N11 C1 . 1.344(8) y N31 C3 . 1.326(8) y N12 C1 . 1.342(8) y N21 C2 . 1.346(7) y N22 C2 . 1.331(8) y N32 C3 . 1.347(8) y C4 C9 . 1.08(2) ? C4 C10 . 1.45(4) ? C4 C8 . 1.29(4) ? C4 C5 3_565 1.51(3) ? C5 C7 . 1.00(3) ? C5 C10 3_465 1.10(4) ? C5 C4 3_465 1.51(3) ? C5 C6 . 1.80(3) ? C6 C7 . 0.80(3) ? C6 C9 . 1.14(3) ? C6 C8 . 1.68(4) ? C7 C10 3_465 1.54(4) ? C7 C9 . 1.94(3) ? C8 C9 . 1.12(5) ? C10 C5 3_565 1.10(4) ? C10 C7 3_565 1.54(4) ?