#------------------------------------------------------------------------------ #$Date: 2009-11-18 14:56:34 +0000 (Wed, 18 Nov 2009) $ #$Revision: 858 $ #$URL: svn://www.crystallography.net/cod/cif/2/2102052.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2102052 _space_group_IT_number 4 _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _[local]_cod_cif_authors_sg_H-M 'P 21' loop_ _publ_author_name 'Ohhara, Takashi' 'Harada, Jun' 'Ohashi, Yuji' 'Tanaka, Ichiro' 'Kumazawa, Shintaro' 'Niimura, Nobuo' _publ_section_title ; Direct Observation of Deuterium Migration in Crystalline-State Reaction by Single Crystal Neutron Diffraction II. 3-1 Photoisomerization of a Cobaloxime Complex ; _journal_issue 2 _journal_name_full 'Acta Crystallographica, Section B' _journal_page_first 245 _journal_page_last 253 _journal_volume 56 _journal_year 2000 _chemical_formula_iupac '[Co (C4 D7 N2 O2)2 (C4 H4 D2 N) (C8 D11 N1)]' _chemical_formula_sum 'C20 H4 Co D27 N6 O4' _[local]_cod_chemical_formula_sum_orig 'C20 H4 Co N6 O4 D27' _chemical_formula_weight 504.00 _chemical_name_systematic ; (3-cyanopropyl)[(R)-1-phenylethylamine]cobaloxime ; _symmetry_cell_setting Monoclinic _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 96.3220(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 9.67720(10) _cell_length_b 13.8988(2) _cell_length_c 8.94320(10) _cell_measurement_reflns_used 512 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 30 _cell_measurement_theta_min 3 _cell_volume 1195.56(3) _computing_cell_refinement 'SMART (Siemens, 1995)' _computing_data_collection 'SMART (Siemens, 1995)' _computing_data_reduction 'SAINT (Siemens, 1995)' _computing_molecular_graphics 'ORTEP-III (Burnet & Johnson, 1996)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SIR97 (Altomare et al., 1999)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full .992 _diffrn_measured_fraction_theta_max .992 _diffrn_measurement_device_type 'Siemens SMART CCD' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'rotate anode' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .0146 _diffrn_reflns_av_sigmaI/netI .0230 _diffrn_reflns_limit_h_max 13 _diffrn_reflns_limit_h_min -13 _diffrn_reflns_limit_k_max 19 _diffrn_reflns_limit_k_min -19 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 14136 _diffrn_reflns_theta_full 30.52 _diffrn_reflns_theta_max 30.52 _diffrn_reflns_theta_min 2.12 _diffrn_standards_decay_% none _diffrn_standards_interval_count none _diffrn_standards_interval_time none _diffrn_standards_number none _exptl_absorpt_coefficient_mu .754 _exptl_absorpt_correction_T_max .801 _exptl_absorpt_correction_T_min .696 _exptl_absorpt_correction_type Empirical _exptl_absorpt_process_details 'SADABS (Sheldrick, 1996)' _exptl_crystal_colour red _exptl_crystal_density_diffrn 1.329 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 504 _exptl_crystal_size_max .4 _exptl_crystal_size_mid .3 _exptl_crystal_size_min .15 _refine_diff_density_max .273 _refine_diff_density_min -.240 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack -.007(7) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.007 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 341 _refine_ls_number_reflns 7077 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.006 _refine_ls_R_factor_all .0292 _refine_ls_R_factor_gt .0262 _refine_ls_shift/su_max .001 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0505P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .0701 _reflns_number_gt 6573 _reflns_number_total 7077 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file se0292.cif loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Co Co .3494 .9721 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol Co1 .256156(15) .113672(14) .024048(16) .03261(5) Uani d . 1 Co O1 .52541(11) .09926(10) -.07695(13) .0510(3) Uani d . 1 O HO1 .437(2) .0286(17) -.148(2) .061 Uiso d . 1 H O2 .16804(14) .23517(11) .25068(14) .0588(3) Uani d . 1 O O3 -.01697(13) .13261(12) .11562(15) .0609(4) Uani d . 1 O HO3 .055(3) .184(2) .177(3) .073 Uiso d . 1 H O4 .34393(12) -.00833(9) -.20320(15) .0504(2) Uani d . 1 O N1 .44538(12) .14316(8) .01808(14) .0384(2) Uani d . 1 N N2 .27354(17) .21022(11) .17332(17) .0424(3) Uani d . 1 N N3 .06481(12) .08761(9) .02331(14) .0415(3) Uani d . 1 N N4 .23817(15) .01859(9) -.12765(17) .0373(3) Uani d . 1 N C1 .49706(15) .21084(10) .10705(17) .0420(3) Uani d . 1 C C2 .39483(19) .24996(12) .20164(17) .0433(3) Uani d . 1 C C3 .01228(16) .02162(12) -.06899(17) .0445(3) Uani d . 1 C C4 .11444(17) -.01880(11) -.15998(18) .0437(3) Uani d . 1 C C5 .64421(19) .24506(14) .1154(3) .0601(4) Uani d . 1 C H5A .6894 .2151 .0372 .090 Uiso calc R 1 H H5B .6923 .2284 .2116 .090 Uiso calc R 1 H H5C .6454 .3136 .1029 .090 Uiso calc R 1 H C6 .4281(3) .32462(17) .3191(2) .0681(5) Uani d . 1 C H6A .3434 .3514 .3476 .102 Uiso calc R 1 H H6B .4824 .3746 .2801 .102 Uiso calc R 1 H H6C .4801 .2960 .4055 .102 Uiso calc R 1 H C7 -.13617(19) -.01104(19) -.0803(3) .0668(5) Uani d . 1 C H7A -.1912 .0368 -.0369 .100 Uiso calc R 1 H H7B -.1417 -.0707 -.0271 .100 Uiso calc R 1 H H7C -.1706 -.0201 -.1842 .100 Uiso calc R 1 H C8 .0801(2) -.08929(16) -.2847(3) .0652(5) Uani d . 1 C H8A .1554 -.0921 -.3461 .098 Uiso calc R 1 H H8B -.0031 -.0693 -.3450 .098 Uiso calc R 1 H H8C .0661 -.1518 -.2432 .098 Uiso calc R 1 H N5 .29388(18) .00904(13) .1900(2) .0490(4) Uani d . 1 N HN5A .238(3) -.0364(18) .169(3) .059 Uiso d . 1 H HN5B .273(2) .0306(18) .273(3) .059 Uiso d . 1 H C9 .4293(2) -.04391(12) .2185(2) .0474(3) Uani d . 1 C H9 .460(2) -.0514(17) .119(3) .057 Uiso d . 1 H C10 .4085(3) -.14519(16) .2788(3) .0725(6) Uani d . 1 C H10A .490(3) -.179(3) .291(4) .109 Uiso d . 1 H H10B .349(4) -.179(3) .222(4) .109 Uiso d . 1 H H10C .380(3) -.140(3) .386(4) .109 Uiso d . 1 H C11 .53274(16) .01142(11) .32492(16) .0438(3) Uani d . 1 C C12 .6681(2) .02219(17) .2919(2) .0622(5) Uani d . 1 C H12 .686(3) .004(2) .207(3) .075 Uiso d . 1 H C13 .7673(2) .0687(2) .3909(3) .0795(7) Uani d . 1 C H13 .862(3) .071(2) .360(4) .095 Uiso d . 1 H C14 .7319(3) .1053(3) .5235(3) .0805(7) Uani d . 1 C H14 .813(3) .138(2) .588(3) .097 Uiso d . 1 H C15 .5994(3) .09561(18) .5590(2) .0735(6) Uani d . 1 C H15 .573(3) .109(3) .657(3) .088 Uiso d . 1 H C16 .4996(2) .04796(15) .4616(2) .0559(4) Uani d . 1 C H16 .407(2) .0432(19) .479(3) .067 Uiso d . 1 H C17 .2077(2) .22140(13) -.1233(2) .0425(4) Uani d . 1 C H17A .280(2) .2686(16) -.105(2) .051 Uiso d . 1 H H17B .137(2) .2516(17) -.095(3) .051 Uiso d . 1 H C18 .0311(2) .34409(16) -.3366(2) .0640(5) Uani d . 1 C C19 .1737(2) .19685(13) -.28737(17) .0531(4) Uani d . 1 C H19A .095(2) .1544(19) -.312(3) .064 Uiso d . 1 H H19B .258(2) .1686(18) -.321(3) .064 Uiso d . 1 H C20 .1443(2) .28780(14) -.38536(18) .0590(4) Uani d . 1 C H20A .123(2) .2730(18) -.488(3) .071 Uiso d . 1 H H20B .227(3) .3313(19) -.373(3) .071 Uiso d . 1 H N6 -.0537(3) .3886(2) -.2937(4) .1081(9) Uani d . 1 N loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Co1 .03561(7) .03340(7) .02865(7) .00139(7) .00285(4) .00076(8) O1 .0434(5) .0553(8) .0565(6) .0010(5) .0160(4) -.0053(5) O2 .0650(7) .0688(8) .0451(6) .0020(6) .0168(5) -.0182(5) O3 .0466(5) .0830(13) .0555(6) .0040(6) .0175(5) -.0144(6) O4 .0491(6) .0437(5) .0600(6) .0053(5) .0136(5) -.0145(5) N1 .0393(5) .0377(5) .0384(5) -.0004(4) .0055(4) .0032(4) N2 .0519(8) .0445(7) .0307(6) .0018(6) .0047(5) -.0025(5) N3 .0386(5) .0489(7) .0376(5) .0024(4) .0064(4) -.0013(4) N4 .0415(6) .0318(5) .0383(6) .0038(5) .0030(5) -.0018(4) C1 .0456(7) .0374(6) .0417(7) -.0037(5) -.0009(5) .0054(5) C2 .0578(9) .0379(7) .0329(6) -.0039(6) -.0003(6) -.0001(5) C3 .0409(7) .0488(7) .0427(7) -.0026(6) -.0004(5) .0023(6) C4 .0474(7) .0383(7) .0436(7) -.0013(6) -.0024(6) -.0015(5) C5 .0507(9) .0507(9) .0771(12) -.0126(7) -.0007(8) .0046(8) C6 .0845(14) .0633(12) .0547(10) -.0191(10) -.0001(9) -.0183(9) C7 .0450(8) .0839(13) .0706(12) -.0140(9) .0020(8) -.0059(10) C8 .0659(11) .0584(10) .0689(12) -.0056(9) -.0041(9) -.0254(9) N5 .0461(8) .0533(9) .0469(8) -.0033(6) .0022(6) .0185(7) C9 .0560(9) .0430(8) .0421(7) .0071(6) -.0005(6) .0076(6) C10 .0972(16) .0438(9) .0705(12) -.0017(10) -.0180(12) .0129(9) C11 .0476(7) .0442(7) .0395(6) .0068(5) .0041(5) .0107(5) C12 .0545(10) .0747(12) .0591(10) .0118(8) .0135(8) .0127(9) C13 .0508(10) .0912(16) .0946(17) -.0083(10) .0002(10) .0214(13) C14 .0811(13) .0833(17) .0716(12) -.0212(14) -.0159(10) .0183(13) C15 .0964(15) .0737(16) .0490(9) -.0083(11) .0014(9) -.0023(9) C16 .0596(9) .0628(9) .0464(8) -.0005(8) .0115(7) .0014(7) C17 .0536(9) .0382(7) .0350(7) .0072(6) .0019(6) .0031(5) C18 .0739(12) .0626(11) .0539(9) .0237(9) .0004(9) .0079(8) C19 .0787(11) .0477(8) .0323(6) .0200(8) .0040(7) .0006(6) C20 .0881(13) .0553(9) .0343(7) .0244(9) .0099(7) .0088(6) N6 .1041(17) .1114(19) .112(2) .0585(16) .0251(15) .0089(16) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Co1 N1 1.8829(12) Co1 N3 1.8861(12) Co1 N2 1.8872(15) Co1 N4 1.8882(14) Co1 C17 2.0155(17) Co1 N5 2.0813(16) O1 N1 1.3562(16) O2 N2 1.341(2) O3 N3 1.3575(16) O4 N4 1.3402(18) N1 C1 1.2964(19) N2 C2 1.297(2) N3 C3 1.299(2) N4 C4 1.308(2) C1 C2 1.475(2) C1 C5 1.495(2) C2 C6 1.487(2) C3 C4 1.460(2) C3 C7 1.499(2) C4 C8 1.494(2) N5 C9 1.500(2) C9 C11 1.513(2) C9 C10 1.528(3) C11 C12 1.383(3) C11 C16 1.393(2) C12 C13 1.391(3) C13 C14 1.368(5) C14 C15 1.361(4) C15 C16 1.395(3) C17 C19 1.507(2) C18 N6 1.128(3) C18 C20 1.452(3) C19 C20 1.547(2) loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle N1 Co1 N3 177.64(6) N1 Co1 N2 81.61(6) N3 Co1 N2 98.63(6) N1 Co1 N4 98.33(6) N3 Co1 N4 81.39(6) N2 Co1 N4 179.09(7) N1 Co1 C17 88.67(7) N3 Co1 C17 89.01(7) N2 Co1 C17 86.02(8) N4 Co1 C17 93.08(5) N1 Co1 N5 94.45(6) N3 Co1 N5 87.90(6) N2 Co1 N5 89.85(6) N4 Co1 N5 91.05(8) C17 Co1 N5 174.42(9) C1 N1 O1 120.18(12) C1 N1 Co1 116.82(11) O1 N1 Co1 122.96(9) C2 N2 O2 120.89(15) C2 N2 Co1 116.70(13) O2 N2 Co1 122.37(12) C3 N3 O3 119.86(13) C3 N3 Co1 116.94(11) O3 N3 Co1 123.18(10) C4 N4 O4 120.59(14) C4 N4 Co1 116.52(12) O4 N4 Co1 122.86(10) N1 C1 C2 112.44(13) N1 C1 C5 124.23(16) C2 C1 C5 123.32(15) N2 C2 C1 112.39(14) N2 C2 C6 123.82(18) C1 C2 C6 123.77(16) N3 C3 C4 112.58(13) N3 C3 C7 124.16(17) C4 C3 C7 123.25(15) N4 C4 C3 112.55(14) N4 C4 C8 123.24(17) C3 C4 C8 124.05(15) C9 N5 Co1 123.05(12) N5 C9 C11 111.26(15) N5 C9 C10 111.41(19) C11 C9 C10 110.50(15) C12 C11 C16 117.58(17) C12 C11 C9 119.84(16) C16 C11 C9 122.47(16) C11 C12 C13 121.2(2) C14 C13 C12 120.2(2) C15 C14 C13 119.9(2) C14 C15 C16 120.4(2) C11 C16 C15 120.74(19) C19 C17 Co1 118.59(12) N6 C18 C20 177.3(3) C17 C19 C20 111.93(15) C18 C20 C19 111.59(16)