#------------------------------------------------------------------------------ #$Date: 2011-09-28 15:24:46 +0100 (Wed, 28 Sep 2011) $ #$Revision: 26848 $ #$URL: svn://www.crystallography.net/cod/cif/2/10/20/2102053.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2102053 loop_ _publ_author_name 'Ohhara, Takashi' 'Harada, Jun' 'Ohashi, Yuji' 'Tanaka, Ichiro' 'Kumazawa, Shintaro' 'Niimura, Nobuo' _publ_section_title ; Direct Observation of Deuterium Migration in Crystalline-State Reaction by Single Crystal Neutron Diffraction II. 3-1 Photoisomerization of a Cobaloxime Complex ; _journal_issue 2 _journal_name_full 'Acta Crystallographica, Section B' _journal_page_first 245 _journal_page_last 253 _journal_volume 56 _journal_year 2000 _chemical_formula_iupac '[Co (C4 D7 N2 O2)2 (C4 H4 D2 N) (C8 D11 N1)]' _chemical_formula_sum 'C20 H4 Co D27 N6 O4' _chemical_formula_weight 504.00 _chemical_name_systematic ; (3-cyanopropyl)[(R)-1-phenylethylamine]cobaloxime ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _audit_creation_method SHELXL _cell_angle_alpha 90.000(5) _cell_angle_beta 99.9540(10) _cell_angle_gamma 90.000(5) _cell_formula_units_Z 2 _cell_length_a 9.15790(10) _cell_length_b 13.9694(2) _cell_length_c 9.27570(10) _cell_measurement_reflns_used 512 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 30 _cell_measurement_theta_min 2 _cell_volume 1168.78(2) _computing_cell_refinement 'SMART (Siemens, 1995)' _computing_data_collection 'SMART (Siemens, 1995)' _computing_data_reduction 'SAINT (Siemens, 1995)' _computing_molecular_graphics 'ORTEP-III (Burnet & Johnson, 1996)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SIR97 (Altomare et al., 1999)' _diffrn_ambient_temperature 293(2) _diffrn_measurement_device 'Siemens SMART CCD' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'rotate anode' _diffrn_radiation_type MoKa _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .0407 _diffrn_reflns_av_sigmaI/netI .0815 _diffrn_reflns_limit_h_max 13 _diffrn_reflns_limit_h_min -12 _diffrn_reflns_limit_k_max 18 _diffrn_reflns_limit_k_min -19 _diffrn_reflns_limit_l_max 7 _diffrn_reflns_limit_l_min -13 _diffrn_reflns_number 10177 _diffrn_reflns_theta_max 30.75 _diffrn_reflns_theta_min 2.23 _diffrn_standards_decay_% none _diffrn_standards_interval_count none _diffrn_standards_interval_time none _diffrn_standards_number none _exptl_absorpt_coefficient_mu .771 _exptl_absorpt_correction_T_max .753 _exptl_absorpt_correction_T_min .461 _exptl_absorpt_correction_type 'Empirical (SADABS; Sheldrick, 1996)' _exptl_crystal_colour red _exptl_crystal_density_diffrn 1.359 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 504 _exptl_crystal_size_max .5 _exptl_crystal_size_mid .3 _exptl_crystal_size_min .1 _refine_diff_density_max .842 _refine_diff_density_min -1.189 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack .042(13) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_all .976 _refine_ls_goodness_of_fit_obs 1.072 _refine_ls_hydrogen_treatment 'riding model' _refine_ls_matrix_type full _refine_ls_number_parameters 281 _refine_ls_number_reflns 6655 _refine_ls_number_restraints 3 _refine_ls_restrained_S_all .976 _refine_ls_restrained_S_obs 1.071 _refine_ls_R_factor_all .0566 _refine_ls_R_factor_gt .0471 _refine_ls_shift/esd_max -.004 _refine_ls_shift/esd_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_scheme 'calc w=1/[s^2^(Fo^2^)+( 0.0501P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_wR_factor_ref .1177 _reflns_number_observed 5273 _reflns_number_total 6655 _reflns_observed_criterion >2sigma(I) _[local]_cod_data_source_file se0292.cif _[local]_cod_cif_authors_sg_H-M 'P 21' _[local]_cod_chemical_formula_sum_orig 'C20 H4 Co N6 O4 D27' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2102053 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Co1 .03300(9) .02454(8) .02433(8) -.00201(11) .00352(7) .00015(11) O1 .0427(6) .0494(7) .0482(7) .0021(10) .0162(6) .0063(10) O2 .0556(9) .0599(9) .0370(7) -.0068(8) .0149(7) .0132(7) O3 .0449(7) .0581(7) .0540(8) .0032(10) .0214(6) .0115(11) O4 .0548(9) .0373(7) .0445(8) -.0036(6) .0190(7) .0084(6) N1 .0387(8) .0288(6) .0317(8) -.0028(6) .0057(7) -.0010(6) N2 .0407(9) .0335(7) .0297(8) -.0042(7) .0042(7) .0019(7) N3 .0382(9) .0338(7) .0349(8) -.0027(6) .0059(7) -.0007(7) N4 .0437(9) .0250(6) .0298(7) -.0022(6) .0099(7) -.0001(6) N5 .0472(10) .0367(8) .0303(8) -.0013(8) .0031(8) -.0071(7) C1 .0430(10) .0286(8) .0374(10) .0018(8) -.0023(9) -.0045(8) C2 .0485(11) .0300(8) .0322(10) -.0013(8) -.0049(9) -.0003(8) C3 .0395(10) .0304(8) .0413(11) .0036(8) -.0021(9) -.0030(8) C4 .0501(12) .0284(8) .0362(10) .0026(8) -.0038(10) -.0003(8) C6 .0688(15) .0458(11) .0465(12) -.0021(11) -.0128(12) .0152(10) C7 .0468(13) .0520(13) .081(2) .0140(11) -.0027(14) .0010(13) C8 .070(2) .0432(11) .0482(13) .0081(11) -.0034(13) .0119(10) C9 .0493(12) .0406(10) .0360(10) -.0138(9) .0028(10) -.0061(9) C10 .094(2) .0389(11) .070(2) -.0078(12) -.025(2) -.0071(12) C11 .0434(10) .0390(9) .0330(9) -.0071(8) .0017(9) -.0091(8) C12 .0551(14) .0628(13) .0462(13) -.0078(12) .0100(11) -.0085(11) C13 .0513(13) .073(2) .070(2) .0084(12) -.0064(13) -.0142(15) C14 .0711(15) .067(2) .0541(13) .0110(15) -.0181(12) -.002(2) C15 .081(2) .0581(14) .0401(11) -.0035(14) -.0001(12) .0010(12) C16 .0511(13) .0568(12) .0389(11) .0025(11) .0066(10) -.0051(10) C17 .0399(12) .0256(9) .0286(10) -.0033(9) .0010(10) -.0033(8) C19 .070(2) .0431(12) .0370(13) -.0150(12) .0109(13) -.0066(11) C20 .108(3) .057(2) .043(2) -.018(2) .011(2) -.0204(13) N6 .0503(12) .0486(12) .071(2) -.0164(10) .0093(13) -.0014(12) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_group _atom_site_type_symbol Co1 .76676(2) .55709(2) .98039(2) .02746(5) Uani d . 1 . Co O1 .48655(14) .55803(13) 1.07735(15) .0458(3) Uani d . 1 . O H1 .53448(14) .51715(13) 1.12856(15) .069 Uiso calc R 1 . H O2 .8499(2) .65930(12) .7428(2) .0500(4) Uani d . 1 . O O3 1.04775(15) .55363(14) .8825(2) .0508(4) Uani d . 1 . O H3 .99799(15) .59158(14) .8270(2) .076 Uiso calc R 1 . H O4 .6759(2) .44606(10) 1.2081(2) .0443(4) Uani d . 1 . O N1 .5682(2) .59327(10) .9817(2) .0331(4) Uani d . 1 . N N2 .7441(2) .64585(12) .8234(2) .0349(4) Uani d . 1 . N N3 .9675(2) .52194(11) .9828(2) .0357(4) Uani d . 1 . N N4 .7874(2) .46755(10) 1.1354(2) .0324(4) Uani d . 1 . N N5 .7161(2) .44517(12) .8329(2) .0385(5) Uani d . 1 . N H5NA .7484(2) .46313(12) .7507(2) .046 Uiso calc R 1 . H H5NB .7733(2) .39559(12) .8699(2) .046 Uiso calc R 1 . H C1 .5122(2) .65919(13) .8903(2) .0374(5) Uani d . 1 . C C2 .6145(3) .68846(13) .7933(2) .0383(5) Uani d . 1 . C C3 1.0246(2) .46090(13) 1.0822(2) .0382(5) Uani d . 1 . C C4 .9199(3) .42945(13) 1.1734(2) .0396(5) Uani d . 1 . C C5 .3585(3) .6992(2) .8810(3) .0529(6) Uiso d . 1 . C H5A .3098(8) .6680(10) .9519(15) .079 Uiso calc R 1 . H H5B .3031(7) .6884(12) .7847(7) .079 Uiso calc R 1 . H H5C .3643(3) .7667(3) .901(2) .079 Uiso calc R 1 . H C6 .5725(3) .7558(2) .6689(3) .0564(7) Uani d . 1 . C H6A .6587(5) .7714(11) .6276(14) .085 Uiso calc R 1 . H H6B .532(2) .8131(6) .7032(5) .085 Uiso calc R 1 . H H6C .4997(17) .7262(6) .5954(10) .085 Uiso calc R 1 . H C7 1.1808(3) .4246(2) 1.0956(3) .0614(8) Uani d . 1 . C H7A 1.1972(8) .4018(14) 1.0021(6) .092 Uiso calc R 1 . H H7B 1.1960(8) .3733(10) 1.1654(18) .092 Uiso calc R 1 . H H7C 1.2489(3) .4756(4) 1.128(2) .092 Uiso calc R 1 . H C8 .9574(3) .3623(2) 1.2996(3) .0556(7) Uani d . 1 . C H8A .8726(7) .3542(11) 1.3464(13) .083 Uiso calc R 1 . H H8B 1.0381(14) .3881(7) 1.3686(10) .083 Uiso calc R 1 . H H8C .986(2) .3015(5) 1.2651(4) .083 Uiso calc R 1 . H C9 .5627(3) .40518(15) .7849(2) .0425(5) Uani d . 1 . C H9 .5136(3) .40241(15) .8707(2) .051 Uiso calc R 1 . H C10 .5746(4) .3017(2) .7279(3) .0721(9) Uani d . 1 . C H10A .627(2) .2626(4) .8048(8) .108 Uiso calc R 1 . H H10B .627(2) .3024(3) .6467(16) .108 Uiso calc R 1 . H H10C .4769(4) .2761(6) .697(2) .108 Uiso calc R 1 . H C11 .4683(2) .46659(14) .6697(2) .0391(5) Uani d . 1 . C C12 .3252(3) .4907(2) .6838(3) .0545(7) Uani d . 1 . C H12 .2901(3) .4738(2) .7686(3) .065 Uiso calc R 1 . H C13 .2329(3) .5398(2) .5741(3) .0669(8) Uani d . 1 . C H13 .1357(3) .5533(2) .5841(3) .080 Uiso calc R 1 . H C14 .2845(3) .5683(2) .4515(3) .0674(8) Uani d . 1 . C H14 .2239(3) .6031(2) .3793(3) .081 Uiso calc R 1 . H C15 .4289(3) .5449(2) .4354(3) .0610(7) Uani d . 1 . C H15 .4644(3) .5632(2) .3515(3) .073 Uiso calc R 1 . H C16 .5187(3) .4945(2) .5437(3) .0491(6) Uani d . 1 . C H16 .6147(3) .4790(2) .5320(3) .059 Uiso calc R 1 . H C17 .8276(3) .66919(15) 1.1215(3) .0319(5) Uani d P .8484(9) 1 C H17 .7489(3) .71719(15) 1.0994(3) .038 Uiso calc PR .8484(9) 1 H C18 .9645(3) .7151(2) 1.0899(3) .0372(5) Uiso d P .8484(9) 1 C C19 .8433(4) .6484(2) 1.2834(3) .0498(7) Uani d P .8484(9) 1 C H19A .9199(4) .6005(2) 1.3097(3) .060 Uiso calc PR .8484(9) 1 H H19B .7509(4) .6217(2) 1.3029(3) .060 Uiso calc PR .8484(9) 1 H C20 .8825(2) .73728(13) 1.3808(2) .0695(10) Uani d P .8484(9) 1 C H20A .8909(2) .71937(13) 1.4818(2) .104 Uiso calc PR .8484(9) 1 H H20B .8060(2) .78452(13) 1.3572(2) .104 Uiso calc PR .8484(9) 1 H H20C .9751(2) .76334(13) 1.3640(2) .104 Uiso calc PR .8484(9) 1 H N6 1.0694(2) .75457(13) 1.0676(2) .0568(7) Uani d PR .8484(9) 1 N C17B .8794(2) .64970(13) 1.1592(2) .023(6) Uiso d PRD .0604(11) 2 C H17B .9408(2) .61317(13) 1.2373(2) .028 Uiso calc PR .0604(11) 2 H C18B .9637(2) .71520(13) 1.0896(2) .050 Uiso d PRD .0604(11) 2 C C19B .7791(2) .70510(13) 1.2094(2) .018(5) Uiso d PR .0604(11) 2 C H19C .6960(2) .66529(13) 1.2237(2) .022 Uiso calc PR .0604(11) 2 H H19D .7423(2) .75202(13) 1.1348(2) .022 Uiso calc PR .0604(11) 2 H C20B .8390(2) .76080(13) 1.3600(2) .052(10) Uiso d PR .0604(11) 2 C H20D .7603(2) .79832(13) 1.3872(2) .078 Uiso calc PR .0604(11) 2 H H20E .9194(2) .80211(13) 1.3468(2) .078 Uiso calc PR .0604(11) 2 H H20F .8731(2) .71519(13) 1.4358(2) .078 Uiso calc PR .0604(11) 2 H N6B 1.0386(2) .76894(13) 1.0359(2) .089(17) Uiso d PR .0604(11) 2 N C17C .8280(2) .66824(13) 1.1224(2) .050 Uiso d PR .0909(12) 3 C H17A .9220(2) .69292(13) 1.1039(2) .060 Uiso calc PR .0909(12) 3 H H17C .7554(2) .71894(13) 1.0990(2) .060 Uiso calc PR .0909(12) 3 H C19C .8440(2) .64738(13) 1.2845(2) .050 Uiso d PR .0909(12) 3 C H19E .9212(2) .59988(13) 1.3111(2) .060 Uiso calc PR .0909(12) 3 H H19F .7519(2) .62040(13) 1.3044(2) .060 Uiso calc PR .0909(12) 3 H C20C .8825(2) .73728(13) 1.3808(2) .050 Uiso d PR .0909(12) 3 C H20G .7958(2) .77831(13) 1.3688(2) .060 Uiso calc PR .0909(12) 3 H H20H .9031(2) .71727(13) 1.4824(2) .060 Uiso calc PR .0909(12) 3 H C18C .9993(2) .79001(13) 1.3530(2) .056(7) Uiso d PR .0909(12) 3 C N6C 1.0792(2) .83321(13) 1.3093(2) .093(10) Uiso d PR .0909(12) 3 N loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Co Co .3494 .9721 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle N1 Co1 N4 98.15(7) N1 Co1 N2 81.50(7) N4 Co1 N2 179.22(7) N1 Co1 N3 178.85(7) N4 Co1 N3 81.42(8) N2 Co1 N3 98.94(8) N1 Co1 C17C 87.13(7) N4 Co1 C17C 91.84(7) N2 Co1 C17C 88.85(8) N3 Co1 C17C 91.81(8) N1 Co1 C17 86.98(8) N4 Co1 C17 92.26(8) N2 Co1 C17 88.43(8) N3 Co1 C17 91.96(9) N1 Co1 N5 95.74(7) N4 Co1 N5 89.10(7) N2 Co1 N5 90.23(7) N3 Co1 N5 85.33(7) C17C Co1 N5 176.83(8) C17 Co1 N5 176.77(10) N1 Co1 C17B 99.40(7) N4 Co1 C17B 81.06(7) N2 Co1 C17B 99.69(7) N3 Co1 C17B 79.48(7) N5 Co1 C17B 162.95(7) C1 N1 O1 119.2(2) C1 N1 Co1 117.3(2) O1 N1 Co1 123.39(12) C2 N2 O2 122.3(2) C2 N2 Co1 115.7(2) O2 N2 Co1 121.87(13) C3 N3 O3 120.2(2) C3 N3 Co1 116.6(2) O3 N3 Co1 123.10(12) C4 N4 O4 121.2(2) C4 N4 Co1 116.0(2) O4 N4 Co1 122.82(12) C9 N5 Co1 124.40(15) N1 C1 C2 112.1(2) N1 C1 C5 124.2(2) C2 C1 C5 123.6(2) N2 C2 C1 113.2(2) N2 C2 C6 123.6(2) C1 C2 C6 123.1(2) N3 C3 C4 112.8(2) N3 C3 C7 122.8(2) C4 C3 C7 124.4(2) N4 C4 C3 113.1(2) N4 C4 C8 122.7(2) C3 C4 C8 124.1(2) N5 C9 C11 112.7(2) N5 C9 C10 109.3(2) C11 C9 C10 110.6(2) C12 C11 C16 118.1(2) C12 C11 C9 120.3(2) C16 C11 C9 121.4(2) C11 C12 C13 121.3(3) C14 C13 C12 120.1(3) C13 C14 C15 119.5(2) C16 C15 C14 120.0(3) C15 C16 C11 121.0(2) C18 C17 C19 110.0(2) C18 C17 Co1 110.4(2) C19 C17 Co1 117.1(2) N6 C18 C17 177.1(2) C17 C19 C20 113.6(2) C19B C17B C18B 104.1 C19B C17B Co1 109.77(5) C18B C17B Co1 104.81(5) N6B C18B C17B 177.4 C17B C19B C20B 115.3 C19C C17C Co1 117.46(6) C17C C19C C20C 113.0 C18C C20C C19C 116.1 N6C C18C C20C 168.6 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance Co1 N1 1.889(2) Co1 N4 1.890(2) Co1 N2 1.897(2) Co1 N3 1.899(2) Co1 C17C 2.051(2) Co1 C17 2.055(2) Co1 N5 2.076(2) Co1 C17B 2.213(2) O1 N1 1.348(2) O2 N2 1.336(3) O3 N3 1.356(2) O4 N4 1.351(2) N1 C1 1.296(2) N2 C2 1.314(3) N3 C3 1.298(2) N4 C4 1.316(3) N5 C9 1.506(3) C1 C2 1.465(3) C1 C5 1.503(3) C2 C6 1.487(3) C3 C4 1.452(3) C3 C7 1.502(3) C4 C8 1.493(3) C9 C11 1.519(3) C9 C10 1.549(3) C11 C12 1.382(3) C11 C16 1.384(3) C12 C13 1.386(4) C13 C14 1.364(4) C14 C15 1.395(4) C15 C16 1.377(3) C17 C18 1.482(4) C17 C19 1.512(3) C18 N6 1.156(3) C19 C20 1.541(3) C17B C19B 1.34 C17B C18B 1.42 C18B N6B 1.18 C19B C20B 1.61 C17C C19C 1.51 C19C C20C 1.55 C20C C18C 1.36 C18C N6C 1.08