#------------------------------------------------------------------------------ #$Date: 2013-08-29 16:37:19 +0100 (Thu, 29 Aug 2013) $ #$Revision: 88064 $ #$URL: svn://www.crystallography.net/cod/cif/2/10/38/2103872.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2103872 loop_ _publ_author_name 'Melguizo, Manuel' 'Quesada, Antonio' 'Low, John N.' 'Glidewell, Christopher' _publ_section_title ; Supramolecular structures of N^4^-substituted 2,4-diamino-6-benzyloxy-5-nitrosopyrimidines ; _journal_issue 2 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 263 _journal_page_last 276 _journal_volume 59 _journal_year 2003 _chemical_formula_moiety 'C17 H15 N5 O2' _chemical_formula_sum 'C17 H15 N5 O2' _chemical_formula_weight 321.34 _chemical_name_systematic ; 2-Amino-6-benzyloxy-4-(N-phenylamino)-5-nitrosopyrimidine ; _space_group_IT_number 1 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall 'P 1' _symmetry_space_group_name_H-M 'P 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 79.851(2) _cell_angle_beta 87.346(2) _cell_angle_gamma 89.692(5) _cell_formula_units_Z 1 _cell_length_a 4.7622(3) _cell_length_b 5.8123(4) _cell_length_c 13.5635(11) _cell_measurement_reflns_used 2993 _cell_measurement_temperature 120(2) _cell_measurement_theta_max 27.44 _cell_measurement_theta_min 3.05 _cell_volume 369.16(5) _computing_cell_refinement 'DENZO-SMN (Otwinowski & Minor, 1997)' _computing_data_collection 'Kappa-CCD server software (Nonius, 1997)' _computing_data_reduction 'DENZO-SMN (Otwinowski & Minor, 1997)' _computing_molecular_graphics 'PLATON (Spek, 2002)' _computing_publication_material 'SHELXL-97 (Sheldrick, 1997a) and PRPKAPPA (Ferguson, 1999)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997a)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1997b)' _diffrn_ambient_temperature 120(2) _diffrn_measured_fraction_theta_full 0.994 _diffrn_measured_fraction_theta_max 0.973 _diffrn_measurement_device_type Kappa-CCD _diffrn_measurement_method '\f scans, and \w scans with \k offsets' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed X-ray tube' _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.071 _diffrn_reflns_av_sigmaI/netI 0.0813 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 7 _diffrn_reflns_limit_k_min -7 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 5085 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 27.44 _diffrn_reflns_theta_min 3.05 _diffrn_standards_decay_% 0 _exptl_absorpt_coefficient_mu 0.100 _exptl_absorpt_correction_T_max 0.998 _exptl_absorpt_correction_T_min 0.895 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'DENZO-SMN (Otwinowski & Minor, 1997)' _exptl_crystal_colour orange _exptl_crystal_density_diffrn 1.445 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 168 _exptl_crystal_size_max 0.40 _exptl_crystal_size_mid 0.14 _exptl_crystal_size_min 0.02 _refine_diff_density_max 0.240 _refine_diff_density_min -0.281 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.044 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 217 _refine_ls_number_reflns 2993 _refine_ls_number_restraints 3 _refine_ls_restrained_S_all 1.043 _refine_ls_R_factor_all 0.0744 _refine_ls_R_factor_gt 0.0510 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0712P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1157 _refine_ls_wR_factor_ref 0.1362 _reflns_number_gt 2348 _reflns_number_total 2993 _reflns_threshold_expression >2\s(I) _[local]_cod_data_source_file na0145.cif _[local]_cod_data_source_block 5 _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_absorpt_correction_type' value 'Multi-scan' changed to 'multi-scan' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_exptl_absorpt_correction_type' value 'Multi-scan' changed to 'multi-scan' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2103872 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol O5 0.6912(4) 0.6660(4) 0.42918(16) 0.0242(5) Uani d . 1 O O6 0.8705(4) 0.9113(4) 0.66886(15) 0.0220(5) Uani d . 1 O N1 0.5250(5) 1.1914(4) 0.64857(18) 0.0184(5) Uani d . 1 N N2 0.1834(5) 1.4673(4) 0.62031(19) 0.0214(6) Uani d . 1 N N3 0.2449(5) 1.2380(4) 0.50086(19) 0.0190(6) Uani d . 1 N N4 0.3122(5) 0.9852(4) 0.38606(18) 0.0196(6) Uani d . 1 N N5 0.7492(5) 0.7482(4) 0.50760(18) 0.0193(6) Uani d . 1 N C2 0.3201(6) 1.2946(5) 0.5867(2) 0.0168(6) Uani d . 1 C C4 0.3793(5) 1.0606(5) 0.4697(2) 0.0154(6) Uani d . 1 C C5 0.6021(6) 0.9377(5) 0.5265(2) 0.0170(6) Uani d . 1 C C6 0.6623(5) 1.0205(5) 0.6159(2) 0.0172(6) Uani d . 1 C C41 0.1099(6) 1.0710(5) 0.3147(2) 0.0189(7) Uani d . 1 C C42 -0.0391(6) 1.2776(5) 0.3116(2) 0.0216(7) Uani d . 1 C C43 -0.2282(6) 1.3425(6) 0.2366(2) 0.0252(7) Uani d . 1 C C44 -0.2703(6) 1.2034(6) 0.1654(2) 0.0256(7) Uani d . 1 C C45 -0.1259(6) 0.9967(6) 0.1689(2) 0.0274(7) Uani d . 1 C C46 0.0648(6) 0.9304(6) 0.2431(2) 0.0252(7) Uani d . 1 C C61 0.6786(6) 0.8086(5) 0.8404(2) 0.0213(7) Uani d . 1 C C62 0.5716(6) 0.5998(6) 0.8193(2) 0.0258(7) Uani d . 1 C C63 0.3680(7) 0.4723(6) 0.8835(3) 0.0364(9) Uani d . 1 C C64 0.2753(7) 0.5501(7) 0.9694(3) 0.0423(10) Uani d . 1 C C65 0.3834(7) 0.7516(7) 0.9927(3) 0.0402(10) Uani d . 1 C C66 0.5845(7) 0.8847(6) 0.9278(2) 0.0295(8) Uani d . 1 C C67 0.8942(6) 0.9502(5) 0.7712(2) 0.0208(7) Uani d . 1 C H2A 0.0473 1.5407 0.5860 0.026 Uiso calc R 1 H H2B 0.2291 1.5083 0.6769 0.026 Uiso calc R 1 H H4 0.4083 0.8633 0.3732 0.023 Uiso calc R 1 H H42 -0.0123 1.3738 0.3603 0.026 Uiso calc R 1 H H43 -0.3300 1.4843 0.2341 0.030 Uiso calc R 1 H H44 -0.3989 1.2507 0.1143 0.031 Uiso calc R 1 H H45 -0.1563 0.8999 0.1208 0.033 Uiso calc R 1 H H46 0.1655 0.7882 0.2453 0.030 Uiso calc R 1 H H62 0.6382 0.5442 0.7607 0.031 Uiso calc R 1 H H63 0.2937 0.3324 0.8678 0.044 Uiso calc R 1 H H64 0.1358 0.4640 1.0129 0.051 Uiso calc R 1 H H65 0.3219 0.8016 1.0531 0.048 Uiso calc R 1 H H66 0.6555 1.0257 0.9435 0.035 Uiso calc R 1 H H67A 0.8668 1.1182 0.7734 0.025 Uiso calc R 1 H H67B 1.0848 0.9060 0.7938 0.025 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O5 0.0259(11) 0.0267(12) 0.0221(12) 0.0076(9) -0.0039(9) -0.0100(9) O6 0.0225(11) 0.0290(12) 0.0148(11) 0.0070(9) -0.0034(8) -0.0047(9) N1 0.0151(11) 0.0225(13) 0.0186(13) 0.0047(10) -0.0035(9) -0.0061(10) N2 0.0200(13) 0.0231(14) 0.0222(14) 0.0066(10) -0.0043(10) -0.0065(11) N3 0.0213(13) 0.0171(13) 0.0193(14) 0.0032(11) -0.0011(10) -0.0055(11) N4 0.0224(12) 0.0198(14) 0.0176(14) 0.0038(10) -0.0019(10) -0.0062(11) N5 0.0215(13) 0.0200(14) 0.0169(13) -0.0008(11) 0.0029(10) -0.0060(11) C2 0.0161(14) 0.0188(16) 0.0154(15) 0.0023(11) 0.0004(11) -0.0032(12) C4 0.0108(14) 0.0175(15) 0.0173(16) 0.0017(11) -0.0010(11) -0.0011(12) C5 0.0159(15) 0.0168(15) 0.0180(16) 0.0005(11) -0.0005(12) -0.0022(12) C6 0.0150(15) 0.0185(15) 0.0172(16) -0.0026(12) 0.0011(11) -0.0011(12) C41 0.0168(14) 0.0236(17) 0.0167(16) -0.0037(12) -0.0004(12) -0.0042(13) C42 0.0196(15) 0.0258(17) 0.0200(17) 0.0048(12) -0.0051(12) -0.0045(13) C43 0.0204(15) 0.0264(18) 0.0285(18) 0.0072(12) -0.0056(12) -0.0027(15) C44 0.0231(16) 0.0333(19) 0.0200(17) 0.0004(14) -0.0094(12) -0.0018(14) C45 0.0329(18) 0.0322(19) 0.0199(16) -0.0051(14) -0.0038(13) -0.0116(14) C46 0.0289(18) 0.0286(18) 0.0200(16) 0.0040(14) -0.0006(13) -0.0093(14) C61 0.0218(15) 0.0257(17) 0.0162(15) 0.0049(12) -0.0050(11) -0.0027(13) C62 0.0268(16) 0.0242(17) 0.0265(17) 0.0049(13) -0.0070(13) -0.0031(14) C63 0.033(2) 0.0297(19) 0.042(2) 0.0003(15) -0.0099(16) 0.0075(16) C64 0.0235(18) 0.059(3) 0.034(2) 0.0045(18) 0.0004(15) 0.0188(19) C65 0.0355(19) 0.064(3) 0.0191(18) 0.0122(19) 0.0014(14) -0.0023(18) C66 0.0321(18) 0.034(2) 0.0231(18) 0.0083(15) -0.0030(13) -0.0075(15) C67 0.0186(14) 0.0274(18) 0.0177(15) 0.0055(12) -0.0112(11) -0.0049(13) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C6 O6 C67 117.7(2) no C6 N1 C2 114.7(2) no C2 N2 H2A 120.0 no C2 N2 H2B 120.0 no H2A N2 H2B 120.0 no C2 N3 C4 117.3(2) no C4 N4 C41 130.2(3) no C4 N4 H4 114.9 no C41 N4 H4 114.9 no O5 N5 C5 117.4(2) no N3 C2 N2 118.2(3) no N3 C2 N1 127.7(2) no N2 C2 N1 114.1(3) no N3 C4 N4 121.8(2) no N3 C4 C5 121.0(2) no N4 C4 C5 117.2(2) no N5 C5 C6 116.5(2) no N5 C5 C4 128.2(3) no C6 C5 C4 115.2(2) no N1 C6 O6 119.8(2) no N1 C6 C5 124.0(2) no O6 C6 C5 116.2(2) no C42 C41 C46 119.5(3) no C42 C41 N4 125.3(3) no C46 C41 N4 115.2(3) no C41 C42 C43 119.3(3) no C41 C42 H42 120.4 no C43 C42 H42 120.4 no C44 C43 C42 121.0(3) no C44 C43 H43 119.5 no C42 C43 H43 119.5 no C45 C44 C43 120.0(3) no C45 C44 H44 120.0 no C43 C44 H44 120.0 no C44 C45 C46 119.6(3) no C44 C45 H45 120.2 no C46 C45 H45 120.2 no C45 C46 C41 120.6(3) no C45 C46 H46 119.7 no C41 C46 H46 119.7 no C66 C61 C62 119.0(3) no C66 C61 C67 119.6(3) no C62 C61 C67 121.4(3) no C63 C62 C61 120.7(3) no C63 C62 H62 119.7 no C61 C62 H62 119.7 no C64 C63 C62 119.8(3) no C64 C63 H63 120.1 no C62 C63 H63 120.1 no C65 C64 C63 120.3(3) no C65 C64 H64 119.8 no C63 C64 H64 119.8 no C64 C65 C66 120.6(3) no C64 C65 H65 119.7 no C66 C65 H65 119.7 no C61 C66 C65 119.6(3) no C61 C66 H66 120.2 no C65 C66 H66 120.2 no O6 C67 C61 110.7(2) no O6 C67 H67A 109.5 no C61 C67 H67A 109.5 no O6 C67 H67B 109.5 no C61 C67 H67B 109.5 no H67A C67 H67B 108.1 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag O5 N5 1.282(3) no O6 C6 1.342(3) no O6 C67 1.455(3) no N1 C6 1.316(4) no N1 C2 1.382(4) no N2 C2 1.330(4) no N2 H2A 0.8800 no N2 H2B 0.8800 no N3 C2 1.328(4) no N3 C4 1.332(4) no N4 C4 1.338(4) no N4 C41 1.423(4) no N4 H4 0.8800 no N5 C5 1.358(4) no C4 C5 1.451(4) no C5 C6 1.423(4) no C41 C42 1.387(4) no C41 C46 1.399(4) no C42 C43 1.392(4) no C42 H42 0.9500 no C43 C44 1.385(4) no C43 H43 0.9500 no C44 C45 1.376(4) no C44 H44 0.9500 no C45 C46 1.390(4) no C45 H45 0.9500 no C46 H46 0.9500 no C61 C66 1.391(4) no C61 C62 1.399(4) no C61 C67 1.503(4) no C62 C63 1.396(5) no C62 H62 0.9500 no C63 C64 1.377(5) no C63 H63 0.9500 no C64 C65 1.375(6) no C64 H64 0.9500 no C65 C66 1.408(5) no C65 H65 0.9500 no C66 H66 0.9500 no C67 H67A 0.9900 no C67 H67B 0.9900 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N4 H4 O5 . 0.88 1.86 2.593(3) 139 y N2 H2A N5 1_465 0.88 2.07 2.942(3) 173 y C42 H42 O5 1_465 0.95 2.48 3.215(4) 133 y _cod_database_fobs_code 2103872