#------------------------------------------------------------------------------ #$Date: 2013-08-29 16:37:19 +0100 (Thu, 29 Aug 2013) $ #$Revision: 88064 $ #$URL: svn://www.crystallography.net/cod/cif/2/10/38/2103886.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2103886 loop_ _publ_author_name 'Hashizume, Daisuke' 'Miki, Naoko' 'Yamazaki, Toshiyuki' 'Aoyagi, Yosuke' 'Arisato, Tomokuni' 'Uchiyama, Hiroki' 'Endo, Tadashi' 'Yasui, Masanori' 'Iwasaki, Fujiko' _publ_section_title ; Mechanism of the first-order phase transition of an acylurea derivative: observation of intermediate stages of transformation with a detailed temperature-resolved single-crystal diffraction method ; _journal_issue 3 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 404 _journal_page_last 415 _journal_volume 59 _journal_year 2003 _chemical_formula_moiety 'C9 H18 N2 O2' _chemical_formula_sum 'C9 H18 N2 O2' _chemical_formula_weight 186.25 _chemical_melting_point 375 _chemical_name_systematic ; 1-ethyl-3-(4-methylpentanoyl)urea ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 93.021(11) _cell_angle_beta 90.616(7) _cell_angle_gamma 90.319(10) _cell_formula_units_Z 2 _cell_length_a 8.7038(14) _cell_length_b 12.204(3) _cell_length_c 4.9747(10) _cell_measurement_reflns_used 4199 _cell_measurement_temperature 98 _cell_measurement_theta_max 27.485 _cell_measurement_theta_min 2.34 _cell_volume 527.64(19) _computing_cell_refinement 'PROCESS-AUTO (Rigaku Corporation, 1998)' _computing_data_collection 'PROCESS-AUTO (Rigaku Corporation, 1998)' _computing_data_reduction 'PROCESS-AUTO (Rigaku Corporation, 1998)' _computing_molecular_graphics 'ORTEP-III (Burnett & Johnson, 1996)' _computing_publication_material 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SIR-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 98 _diffrn_detector_area_resol_mean 10 _diffrn_measured_fraction_theta_full 0.857 _diffrn_measured_fraction_theta_max 0.857 _diffrn_measurement_device 'RIGAKU RAXIS-RAPID' _diffrn_measurement_method 'Oscillation method' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.035 _diffrn_reflns_av_sigmaI/netI 0.0133 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 15 _diffrn_reflns_limit_k_min -15 _diffrn_reflns_limit_l_max 6 _diffrn_reflns_limit_l_min -6 _diffrn_reflns_number 6068 _diffrn_reflns_theta_full 27.48 _diffrn_reflns_theta_max 27.48 _diffrn_reflns_theta_min 2.34 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.083 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.172 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 204 _exptl_crystal_size_max 0.80 _exptl_crystal_size_mid 0.40 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.272 _refine_diff_density_min -0.236 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.101 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 190 _refine_ls_number_reflns 2076 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.101 _refine_ls_R_factor_all 0.0468 _refine_ls_R_factor_gt 0.0453 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0769P)^2^+0.1768P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1263 _refine_ls_wR_factor_ref 0.1282 _reflns_number_gt 1992 _reflns_number_total 2076 _reflns_threshold_expression >2\s(I) _[local]_cod_data_source_file lc0061.cif _[local]_cod_data_source_block ethyl98K _cod_database_code 2103886 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_occupancy _atom_site_type_symbol O1 0.44032(10) 0.57459(7) 0.24164(18) 0.0197(2) Uani d 1 O O2 0.02166(10) 0.40706(7) 0.22035(18) 0.0195(2) Uani d 1 O N1 0.19696(12) 0.53547(8) 0.3825(2) 0.0165(3) Uani d 1 N H11 0.128(2) 0.5538(14) 0.506(4) 0.021(4) Uiso d 1 H N2 0.25049(12) 0.41607(8) 0.0069(2) 0.0167(2) Uani d 1 N H21 0.338(2) 0.4465(14) 0.003(4) 0.023(4) Uiso d 1 H C1 0.33545(14) 0.59050(9) 0.4018(2) 0.0158(3) Uani d 1 C C2 0.15101(14) 0.44889(9) 0.1958(2) 0.0162(3) Uani d 1 C C11 0.35090(15) 0.67433(10) 0.6398(2) 0.0178(3) Uani d 1 C H111 0.439(2) 0.6487(13) 0.745(3) 0.021(4) Uiso d 1 H H112 0.2602(19) 0.6735(13) 0.748(3) 0.018(4) Uiso d 1 H C12 0.38521(15) 0.79070(10) 0.5489(3) 0.0198(3) Uani d 1 C H121 0.405(2) 0.8406(15) 0.712(4) 0.027(4) Uiso d 1 H H122 0.4770(19) 0.7875(13) 0.445(3) 0.018(4) Uiso d 1 H C13 0.25484(18) 0.84117(10) 0.3886(3) 0.0260(3) Uani d 1 C H131 0.232(2) 0.7902(16) 0.225(4) 0.033(5) Uiso d 1 H C14 0.3084(3) 0.95237(12) 0.2891(3) 0.0387(4) Uani d 1 C H141 0.332(2) 1.0040(17) 0.440(4) 0.040(5) Uiso d 1 H H142 0.397(3) 0.9434(18) 0.175(5) 0.047(6) Uiso d 1 H H143 0.224(3) 0.9838(19) 0.185(5) 0.053(6) Uiso d 1 H C15 0.10882(18) 0.85613(13) 0.5535(4) 0.0354(4) Uani d 1 C H151 0.131(2) 0.9070(17) 0.722(4) 0.041(5) Uiso d 1 H H152 0.065(3) 0.7830(19) 0.622(5) 0.050(6) Uiso d 1 H H153 0.026(3) 0.8914(19) 0.445(5) 0.052(6) Uiso d 1 H C21 0.21377(14) 0.32246(10) -0.1823(2) 0.0181(3) Uani d 1 C H211 0.2767(18) 0.3308(13) -0.340(3) 0.017(4) Uiso d 1 H H212 0.107(2) 0.3260(13) -0.231(3) 0.019(4) Uiso d 1 H C22 0.24513(17) 0.21233(11) -0.0605(3) 0.0252(3) Uani d 1 C H221 0.355(2) 0.2097(16) -0.005(4) 0.039(5) Uiso d 1 H H222 0.179(2) 0.2045(15) 0.100(4) 0.033(5) Uiso d 1 H H223 0.221(2) 0.1502(16) -0.196(4) 0.037(5) Uiso d 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0159(4) 0.0238(5) 0.0191(4) -0.0018(3) 0.0033(4) -0.0007(3) O2 0.0150(4) 0.0237(5) 0.0195(4) -0.0031(3) 0.0032(3) -0.0011(3) N1 0.0139(5) 0.0198(5) 0.0155(5) -0.0004(4) 0.0037(4) -0.0015(4) N2 0.0136(5) 0.0197(5) 0.0164(5) -0.0017(4) 0.0012(4) -0.0018(4) C1 0.0158(6) 0.0165(5) 0.0154(6) 0.0006(4) -0.0010(5) 0.0030(4) C2 0.0165(6) 0.0171(5) 0.0151(5) 0.0006(4) -0.0008(4) 0.0024(4) C11 0.0169(6) 0.0210(6) 0.0153(6) -0.0003(4) 0.0001(5) -0.0010(4) C12 0.0192(6) 0.0196(6) 0.0204(6) -0.0026(4) 0.0016(5) -0.0018(4) C13 0.0374(8) 0.0186(6) 0.0215(6) 0.0000(5) -0.0086(6) -0.0014(5) C14 0.0656(12) 0.0217(7) 0.0289(8) -0.0009(7) -0.0022(8) 0.0029(6) C15 0.0244(7) 0.0270(7) 0.0544(10) 0.0034(5) -0.0106(7) -0.0002(7) C21 0.0170(6) 0.0214(6) 0.0156(6) -0.0004(4) -0.0001(5) -0.0030(4) C22 0.0274(7) 0.0213(6) 0.0267(7) 0.0014(5) 0.0014(6) -0.0010(5) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C1 1.2275(15) O2 C2 1.2435(15) N1 C1 1.3766(15) N1 C2 1.4224(15) N1 H11 0.880(19) N2 C2 1.3321(16) N2 C21 1.4730(15) N2 H21 0.846(18) C1 C11 1.5280(16) C11 C12 1.5417(17) C11 H111 0.984(18) C11 H112 0.961(17) C12 C13 1.5304(19) C12 H121 1.003(18) C12 H122 0.955(17) C13 C15 1.527(2) C13 C14 1.540(2) C13 H131 1.01(2) C14 H141 0.98(2) C14 H142 0.97(2) C14 H143 0.99(2) C15 H151 1.03(2) C15 H152 1.04(2) C15 H153 1.01(3) C21 C22 1.5280(18) C21 H211 0.971(16) C21 H212 0.959(17) C22 H221 0.99(2) C22 H222 0.997(19) C22 H223 1.01(2) loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C1 N1 C2 128.59(10) C1 N1 H11 116.4(11) C2 N1 H11 114.9(11) C2 N2 C21 120.62(11) C2 N2 H21 119.6(12) C21 N2 H21 119.6(12) O1 C1 N1 123.40(11) O1 C1 C11 121.49(11) N1 C1 C11 115.11(10) O2 C2 N2 123.75(11) O2 C2 N1 118.33(11) N2 C2 N1 117.90(11) C1 C11 C12 112.12(10) C1 C11 H111 104.6(10) C12 C11 H111 109.3(9) C1 C11 H112 110.2(10) C12 C11 H112 111.1(10) H111 C11 H112 109.3(14) C13 C12 C11 114.44(11) C13 C12 H121 107.3(10) C11 C12 H121 108.8(10) C13 C12 H122 110.3(10) C11 C12 H122 107.9(9) H121 C12 H122 107.8(14) C15 C13 C12 112.30(12) C15 C13 C14 110.07(13) C12 C13 C14 109.30(13) C15 C13 H131 109.2(11) C12 C13 H131 107.8(11) C14 C13 H131 108.1(11) C13 C14 H141 110.9(12) C13 C14 H142 110.9(13) H141 C14 H142 109.8(18) C13 C14 H143 108.6(13) H141 C14 H143 107.5(18) H142 C14 H143 109.1(19) C13 C15 H151 109.7(11) C13 C15 H152 113.7(13) H151 C15 H152 106.7(17) C13 C15 H153 110.8(13) H151 C15 H153 107.7(18) H152 C15 H153 108.0(18) N2 C21 C22 112.23(10) N2 C21 H211 106.7(9) C22 C21 H211 110.5(9) N2 C21 H212 108.5(10) C22 C21 H212 109.0(10) H211 C21 H212 109.9(14) C21 C22 H221 108.9(12) C21 C22 H222 109.5(11) H221 C22 H222 109.7(17) C21 C22 H223 110.3(12) H221 C22 H223 109.7(17) H222 C22 H223 108.7(15) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C2 N1 C1 O1 4.1(2) C2 N1 C1 C11 -175.84(11) C21 N2 C2 O2 -2.54(18) C21 N2 C2 N1 176.29(10) C1 N1 C2 O2 177.05(11) C1 N1 C2 N2 -1.85(19) O1 C1 C11 C12 58.34(15) N1 C1 C11 C12 -121.68(12) C1 C11 C12 C13 65.93(14) C11 C12 C13 C15 62.45(15) C11 C12 C13 C14 -175.11(12) C2 N2 C21 C22 -81.62(14) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N2 H21 O1 2_665 0.846(18) 2.300(18) 2.9778(15) 137.4(16) N1 H11 O2 2_566 0.880(19) 1.942(19) 2.8222(14) 179.3(17) _cod_database_fobs_code 2103886