#------------------------------------------------------------------------------ #$Date: 2012-02-03 17:16:24 +0000 (Fri, 03 Feb 2012) $ #$Revision: 32112 $ #$URL: svn://www.crystallography.net/cod/cif/2/10/39/2103901.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2103901 loop_ _publ_author_name 'Hashizume, Daisuke' 'Miki, Naoko' 'Yamazaki, Toshiyuki' 'Aoyagi, Yosuke' 'Arisato, Tomokuni' 'Uchiyama, Hiroki' 'Endo, Tadashi' 'Yasui, Masanori' 'Iwasaki, Fujiko' _publ_section_title ; Mechanism of the first-order phase transition of an acylurea derivative: observation of intermediate stages of transformation with a detailed temperature-resolved single-crystal diffraction method ; _journal_issue 3 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 404 _journal_page_last 415 _journal_volume 59 _journal_year 2003 _chemical_formula_moiety 'C9 H18 N2 O2' _chemical_formula_sum 'C9 H18 N2 O2' _chemical_formula_weight 186.25 _chemical_melting_point 375 _chemical_name_systematic ; 1-ethyl-3-(4-methylpentanoyl)urea ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 86.197(10) _cell_angle_beta 91.616(12) _cell_angle_gamma 88.099(6) _cell_formula_units_Z 2 _cell_length_a 8.6137(18) _cell_length_b 12.994(3) _cell_length_c 5.1906(11) _cell_measurement_reflns_used 2962 _cell_measurement_temperature 372 _cell_measurement_theta_max 27.48 _cell_measurement_theta_min 2.79 _cell_volume 579.1(2) _computing_cell_refinement 'PROCESS-AUTO (Rigaku Corporation, 1998)' _computing_data_collection 'PROCESS-AUTO (Rigaku Corporation, 1998)' _computing_data_reduction 'PROCESS-AUTO (Rigaku Corporation, 1998)' _computing_molecular_graphics 'ORTEP-III (Burnett & Johnson, 1996)' _computing_publication_material 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution ; The final structure at 370K was used as an initial model. The minor part of the disordered 3-methylbutyl group was deleted to avoid some viases for disorder analysis. ; _diffrn_ambient_temperature 372 _diffrn_detector_area_resol_mean 10 _diffrn_measured_fraction_theta_full 0.868 _diffrn_measured_fraction_theta_max 0.868 _diffrn_measurement_device 'RIGAKU RAXIS-RAPID' _diffrn_measurement_method 'Oscillation method' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.040 _diffrn_reflns_av_sigmaI/netI 0.0291 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 16 _diffrn_reflns_limit_k_min -16 _diffrn_reflns_limit_l_max 6 _diffrn_reflns_limit_l_min -6 _diffrn_reflns_number 8178 _diffrn_reflns_theta_full 27.48 _diffrn_reflns_theta_max 27.48 _diffrn_reflns_theta_min 2.80 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.076 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.068 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 204 _exptl_crystal_size_max 1.00 _exptl_crystal_size_mid 0.60 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.387 _refine_diff_density_min -0.293 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.753 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 131 _refine_ls_number_reflns 2312 _refine_ls_number_restraints 17 _refine_ls_restrained_S_all 1.772 _refine_ls_R_factor_all 0.1865 _refine_ls_R_factor_gt 0.1244 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1000P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.3045 _refine_ls_wR_factor_ref 0.3336 _reflns_number_gt 1114 _reflns_number_total 2312 _reflns_threshold_expression >2\s(I) _[local]_cod_data_source_file lc0061.cif _[local]_cod_data_source_block ethyl372K _cod_database_code 2103901 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol O1 0.4299(3) 0.5710(2) 0.2076(6) 0.1290(10) Uani d . 1 A . O O2 0.0275(2) 0.41152(19) 0.2663(5) 0.1204(9) Uani d . 1 A . O N1 0.1962(3) 0.5315(2) 0.3685(6) 0.1017(9) Uani d . 1 A . N H11 0.1302 0.5501 0.4793 0.122 Uiso calc R 1 . . H N2 0.2536(3) 0.4159(2) 0.0604(6) 0.1066(10) Uani d D 1 A . N H21 0.3419 0.4445 0.0464 0.128 Uiso calc R 1 . . H C1 0.3266(4) 0.5868(2) 0.3546(7) 0.1013(11) Uani d D 1 . . C C2 0.1551(4) 0.4493(3) 0.2288(7) 0.1005(10) Uani d . 1 . . C C11A 0.3342(5) 0.6684(2) 0.5442(8) 0.1283(14) Uani d PD 0.774(6) A 1 C H111 0.4095 0.6449 0.6797 0.154 Uiso calc PR 0.774(6) A 1 H H112 0.2338 0.6734 0.6235 0.154 Uiso calc PR 0.774(6) A 1 H C12A 0.3760(7) 0.7768(3) 0.4458(17) 0.203(4) Uani d PD 0.774(6) A 1 C H121 0.4117 0.8143 0.5903 0.243 Uiso calc PR 0.774(6) A 1 H H122 0.4606 0.7720 0.3273 0.243 Uiso calc PR 0.774(6) A 1 H C13A 0.2389(8) 0.8363(6) 0.3087(18) 0.219(5) Uani d PD 0.774(6) A 1 C H131 0.2028 0.7964 0.1663 0.263 Uiso calc PR 0.774(6) A 1 H C14A 0.284(2) 0.9425(7) 0.195(3) 0.382(11) Uani d PD 0.774(6) A 1 C H142 0.3715 0.9348 0.0870 0.574 Uiso calc PR 0.774(6) A 1 H H141 0.3097 0.9854 0.3320 0.574 Uiso calc PR 0.774(6) A 1 H H143 0.1976 0.9739 0.0932 0.574 Uiso calc PR 0.774(6) A 1 H C15A 0.0997(13) 0.8609(12) 0.471(3) 0.343(8) Uani d PD 0.774(6) A 1 C H153 0.0187 0.8947 0.3623 0.515 Uiso calc PR 0.774(6) A 1 H H151 0.1302 0.9055 0.6023 0.515 Uiso calc PR 0.774(6) A 1 H H152 0.0623 0.7981 0.5506 0.515 Uiso calc PR 0.774(6) A 1 H C11B 0.3342(5) 0.6684(2) 0.5442(8) 0.1283(14) Uani d PD 0.226(6) A 2 C H113 0.4411 0.6872 0.5726 0.154 Uiso calc PR 0.226(6) A 2 H H114 0.2940 0.6429 0.7082 0.154 Uiso calc PR 0.226(6) A 2 H C12B 0.2364(14) 0.7629(5) 0.434(3) 0.203(4) Uani d PD 0.226(6) A 2 C H123 0.2284 0.7604 0.2479 0.243 Uiso calc PR 0.226(6) A 2 H H124 0.1322 0.7575 0.4991 0.243 Uiso calc PR 0.226(6) A 2 H C13B 0.2968(16) 0.8678(6) 0.495(2) 0.219(5) Uani d PD 0.226(6) A 2 C H132 0.2084 0.9173 0.4930 0.263 Uiso calc PR 0.226(6) A 2 H C14B 0.408(3) 0.904(2) 0.287(4) 0.382(11) Uani d PD 0.226(6) A 2 C H144 0.4415 0.9723 0.3196 0.574 Uiso calc PR 0.226(6) A 2 H H145 0.3566 0.9061 0.1206 0.574 Uiso calc PR 0.226(6) A 2 H H146 0.4974 0.8577 0.2904 0.574 Uiso calc PR 0.226(6) A 2 H C15B 0.378(3) 0.8645(19) 0.761(3) 0.343(8) Uani d PD 0.226(6) A 2 C H154 0.3968 0.9336 0.8066 0.515 Uiso calc PR 0.226(6) A 2 H H155 0.4755 0.8264 0.7572 0.515 Uiso calc PR 0.226(6) A 2 H H156 0.3137 0.8314 0.8874 0.515 Uiso calc PR 0.226(6) A 2 H C21 0.2183(4) 0.3335(3) -0.1002(8) 0.1250(14) Uani d D 1 . . C H211 0.2782 0.3406 -0.2555 0.150 Uiso calc R 1 A . H H212 0.1091 0.3391 -0.1519 0.150 Uiso calc R 1 . . H C22 0.2530(7) 0.2286(4) 0.0324(12) 0.171(2) Uani d D 1 A . C H223 0.2273 0.1765 -0.0827 0.205 Uiso calc R 1 . . H H222 0.1925 0.2205 0.1845 0.205 Uiso calc R 1 . . H H221 0.3615 0.2219 0.0803 0.205 Uiso calc R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0883(14) 0.142(2) 0.160(2) -0.0232(14) 0.0507(15) -0.0064(17) O2 0.0841(14) 0.1289(19) 0.153(2) -0.0235(13) 0.0434(14) -0.0172(16) N1 0.0761(14) 0.110(2) 0.121(2) -0.0094(14) 0.0330(14) -0.0047(17) N2 0.0749(15) 0.114(2) 0.134(2) -0.0090(14) 0.0292(16) -0.0123(18) C1 0.0783(18) 0.100(2) 0.124(3) -0.0042(16) 0.0224(18) 0.017(2) C2 0.0698(17) 0.112(2) 0.118(3) -0.0006(17) 0.0233(18) 0.007(2) C11A 0.104(3) 0.111(3) 0.171(4) -0.009(2) 0.025(3) -0.006(3) C12A 0.182(7) 0.128(5) 0.304(10) -0.031(5) 0.103(8) -0.009(5) C13A 0.230(9) 0.173(7) 0.241(11) -0.039(6) -0.060(8) 0.074(7) C14A 0.63(3) 0.120(7) 0.385(19) -0.002(10) 0.07(2) 0.054(8) C15A 0.177(9) 0.357(17) 0.51(2) 0.045(10) 0.075(12) -0.105(15) C11B 0.104(3) 0.111(3) 0.171(4) -0.009(2) 0.025(3) -0.006(3) C12B 0.182(7) 0.128(5) 0.304(10) -0.031(5) 0.103(8) -0.009(5) C13B 0.230(9) 0.173(7) 0.241(11) -0.039(6) -0.060(8) 0.074(7) C14B 0.63(3) 0.120(7) 0.385(19) -0.002(10) 0.07(2) 0.054(8) C15B 0.177(9) 0.357(17) 0.51(2) 0.045(10) 0.075(12) -0.105(15) C21 0.101(2) 0.131(3) 0.144(4) -0.004(2) 0.031(2) -0.008(3) C22 0.178(5) 0.141(4) 0.193(5) 0.007(3) 0.006(4) -0.014(4) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C1 1.210(4) O2 C2 1.233(4) N1 C1 1.354(4) N1 C2 1.381(5) N1 H11 0.8600 N2 C2 1.319(4) N2 C21 1.436(5) N2 H21 0.8600 C1 C11A 1.496(5) C11A C12A 1.523(6) C11A H111 0.9700 C11A H112 0.9700 C11A C12B 1.534(10) C12A C13A 1.522(9) C12A H121 0.9700 C12A H122 0.9700 C13A C15A 1.522(16) C13A C14A 1.530(14) C13A H131 0.9800 C14A H142 0.9600 C14A H141 0.9600 C14A H143 0.9600 C15A H153 0.9600 C15A H151 0.9600 C15A H152 0.9600 C12B C13B 1.525(12) C12B H123 0.9700 C12B H124 0.9700 C13B C15B 1.53(2) C13B C14B 1.53(3) C13B H132 0.9800 C14B H144 0.9600 C14B H145 0.9600 C14B H146 0.9600 C15B H154 0.9600 C15B H155 0.9600 C15B H156 0.9600 C21 C22 1.502(6) C21 H211 0.9700 C21 H212 0.9700 C22 H223 0.9600 C22 H222 0.9600 C22 H221 0.9600 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C1 N1 C2 128.7(3) C1 N1 H11 115.7 C2 N1 H11 115.7 C2 N2 C21 122.2(3) C2 N2 H21 118.9 C21 N2 H21 118.9 O1 C1 N1 123.8(3) O1 C1 C11A 122.4(3) N1 C1 C11A 113.8(3) O2 C2 N2 123.4(4) O2 C2 N1 118.3(3) N2 C2 N1 118.3(3) C1 C11A C12A 118.2(4) C1 C11A H111 107.8 C12A C11A H111 107.8 C1 C11A H112 107.8 C12A C11A H112 107.8 H111 C11A H112 107.1 C13A C12A C11A 112.3(5) C13A C12A H121 109.1 C11A C12A H121 109.1 C13A C12A H122 109.1 C11A C12A H122 109.1 H121 C12A H122 107.9 C12A C13A C15A 117.0(8) C12A C13A C14A 112.3(9) C15A C13A C14A 103.3(11) C12A C13A H131 108.0 C15A C13A H131 108.0 C14A C13A H131 108.0 C13A C14A H142 109.5 C13A C14A H141 109.5 H142 C14A H141 109.5 C13A C14A H143 109.5 H142 C14A H143 109.5 H141 C14A H143 109.5 C13A C15A H153 109.5 C13A C15A H151 109.5 H153 C15A H151 109.5 C13A C15A H152 109.5 H153 C15A H152 109.5 H151 C15A H152 109.5 C13B C12B H123 108.3 C13B C12B H124 108.3 H123 C12B H124 107.4 C12B C13B C15B 112.0(7) C12B C13B C14B 109.5(7) C15B C13B C14B 109.9(7) C12B C13B H132 108.4 C15B C13B H132 108.4 C14B C13B H132 108.4 C13B C14B H144 109.5 C13B C14B H145 109.5 H144 C14B H145 109.5 C13B C14B H146 109.5 H144 C14B H146 109.5 H145 C14B H146 109.5 C13B C15B H154 109.5 C13B C15B H155 109.5 H154 C15B H155 109.5 C13B C15B H156 109.5 H154 C15B H156 109.5 H155 C15B H156 109.5 N2 C21 C22 112.8(4) N2 C21 H211 109.0 C22 C21 H211 109.0 N2 C21 H212 109.0 C22 C21 H212 109.0 H211 C21 H212 107.8 C21 C22 H223 109.5 C21 C22 H222 109.5 H223 C22 H222 109.5 C21 C22 H221 109.5 H223 C22 H221 109.5 H222 C22 H221 109.5 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C2 N1 C1 O1 0.6(6) C2 N1 C1 C11A -177.8(3) C21 N2 C2 O2 1.7(5) C21 N2 C2 N1 -177.6(3) C1 N1 C2 O2 -177.8(3) C1 N1 C2 N2 1.6(5) O1 C1 C11A C12A 49.9(5) N1 C1 C11A C12A -131.7(4) C1 C11A C12A C13A 78.5(7) C11A C12A C13A C15A 64.5(11) C11A C12A C13A C14A -176.3(9) C2 N2 C21 C22 -84.1(5) C2 N1 C1 C11B -177.8(3) O1 C1 C11B C12B 100.4(7) N1 C1 C11B C12B -81.1(7) C1 C11B C12B C13B -145.1(10) C11B C12B C13B C15B -33.4(17) C11B C12B C13B C14B 88.8(17) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N2 H21 O1 2_665 0.86 2.41 3.100(3) 137.9 N1 H11 O2 2_566 0.86 2.00 2.855(4) 177.8