#------------------------------------------------------------------------------ #$Date: 2008-06-20 14:44:24 +0100 (Fri, 20 Jun 2008) $ #$Revision: 397 $ #$URL: svn://www.crystallography.net/cod/cif/2/2103904.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2103904 loop_ _publ_author_name 'Hashizume, Daisuke' 'Miki, Naoko' 'Yamazaki, Toshiyuki' 'Aoyagi, Yosuke' 'Arisato, Tomokuni' 'Uchiyama, Hiroki' 'Endo, Tadashi' 'Yasui, Masanori' 'Iwasaki, Fujiko' _publ_section_title ; Mechanism of the first-order phase transition of an acylurea derivative: observation of intermediate stages of transformation with a detailed temperature-resolved single-crystal diffraction method ; _journal_issue 3 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 404 _journal_page_last 415 _journal_volume 59 _journal_year 2003 _chemical_formula_moiety 'C10 H20 N2 O2' _chemical_formula_sum 'C10 H20 N2 O2' _chemical_formula_weight 200.28 _chemical_melting_point 381 _chemical_name_systematic ; 1-(4-methylpentanoyl)-3-propylurea ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.902(14) _cell_angle_beta 97.109(8) _cell_angle_gamma 80.47(2) _cell_formula_units_Z 2 _cell_length_a 9.547(4) _cell_length_b 13.688(6) _cell_length_c 5.1166(16) _cell_measurement_reflns_used 3480 _cell_measurement_temperature 298 _cell_measurement_theta_max 27.23 _cell_measurement_theta_min 1.51 _cell_volume 654.3(4) _computing_cell_refinement 'PROCESS-AUTO (Rigaku Corporation, 1998)' _computing_data_collection 'PROCESS-AUTO (Rigaku Corporation, 1998)' _computing_data_reduction 'PROCESS-AUTO (Rigaku Corporation, 1998)' _computing_molecular_graphics 'ORTEP-III (Burnett & Johnson, 1996)' _computing_publication_material 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution ; The final structure at 98K was used as an initial model. ; _diffrn_ambient_temperature 298 _diffrn_detector_area_resol_mean 10 _diffrn_measured_fraction_theta_full 0.827 _diffrn_measured_fraction_theta_max 0.827 _diffrn_measurement_device 'RIGAKU RAXIS-RAPID' _diffrn_measurement_method 'Oscillation method' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.071 _diffrn_reflns_av_sigmaI/netI 0.0579 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_h_min -12 _diffrn_reflns_limit_k_max 17 _diffrn_reflns_limit_k_min -17 _diffrn_reflns_limit_l_max 6 _diffrn_reflns_limit_l_min -6 _diffrn_reflns_number 10255 _diffrn_reflns_theta_full 27.48 _diffrn_reflns_theta_max 27.48 _diffrn_reflns_theta_min 2.18 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count none _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.071 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.017 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 220 _exptl_crystal_size_max 0.50 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.335 _refine_diff_density_min -0.319 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.972 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 127 _refine_ls_number_reflns 2485 _refine_ls_number_restraints 6 _refine_ls_restrained_S_all 1.975 _refine_ls_R_factor_all 0.1872 _refine_ls_R_factor_gt 0.1166 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1000P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.3131 _refine_ls_wR_factor_ref 0.3767 _reflns_number_gt 1178 _reflns_number_total 2485 _reflns_threshold_expression >2\s(I) _[local]_cod_data_source_file lc0061.cif _[local]_cod_data_source_block propyl298K loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol O1 0.1236(3) 0.5584(3) -0.0332(6) 0.1050(12) Uani d . 1 O O2 0.3975(3) 0.4154(2) 0.5961(6) 0.0975(11) Uani d . 1 O N1 0.3307(3) 0.5232(2) 0.2512(6) 0.0836(11) Uani d . 1 N H11 0.4137 0.5401 0.2863 0.100 Uiso calc R 1 H N2 0.1742(3) 0.4212(3) 0.3621(7) 0.0911(12) Uani d . 1 N H21 0.1154 0.4484 0.2325 0.109 Uiso calc R 1 H C1 0.2437(4) 0.5731(3) 0.0441(8) 0.0811(11) Uani d . 1 C C2 0.3029(4) 0.4485(3) 0.4130(8) 0.0808(11) Uani d . 1 C C11 0.3108(4) 0.6517(3) -0.0726(8) 0.0900(13) Uani d D 1 C H111 0.2751 0.6597 -0.2582 0.108 Uiso calc R 1 H H112 0.4137 0.6310 -0.0575 0.108 Uiso calc R 1 H C12 0.2772(5) 0.7513(3) 0.0675(10) 0.1093(16) Uani d D 1 C H121 0.1747 0.7661 0.0737 0.131 Uiso calc R 1 H H122 0.3230 0.7439 0.2478 0.131 Uiso calc R 1 H C13 0.3234(6) 0.8397(3) -0.0551(13) 0.134(2) Uani d D 1 C H131 0.2810 0.8447 -0.2399 0.160 Uiso calc R 1 H C14 0.2702(10) 0.9370(4) 0.0806(19) 0.217(5) Uani d D 1 C H141 0.1681 0.9456 0.0758 0.261 Uiso calc R 1 H H143 0.2956 0.9914 -0.0094 0.261 Uiso calc R 1 H H142 0.3137 0.9351 0.2604 0.261 Uiso calc R 1 H C15 0.4856(6) 0.8229(6) -0.049(2) 0.209(4) Uani d D 1 C H151 0.5138 0.8783 -0.1293 0.251 Uiso calc R 1 H H152 0.5156 0.7636 -0.1440 0.251 Uiso calc R 1 H H153 0.5297 0.8161 0.1304 0.251 Uiso calc R 1 H C21 0.1313(4) 0.3472(3) 0.5193(8) 0.0930(14) Uani d D 1 C H211 0.0317 0.3671 0.5449 0.112 Uiso calc R 1 H H212 0.1878 0.3433 0.6910 0.112 Uiso calc R 1 H C22 0.1503(6) 0.2446(3) 0.3913(11) 0.1219(18) Uani d D 1 C H221 0.0991 0.2492 0.2148 0.146 Uiso calc R 1 H H222 0.2510 0.2224 0.3769 0.146 Uiso calc R 1 H C23 0.0952(7) 0.1689(4) 0.5501(15) 0.150(2) Uani d D 1 C H232 0.1068 0.1061 0.4624 0.180 Uiso calc R 1 H H231 -0.0043 0.1908 0.5653 0.180 Uiso calc R 1 H H233 0.1485 0.1622 0.7225 0.180 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0711(15) 0.133(3) 0.109(2) -0.0320(15) -0.0182(15) 0.031(2) O2 0.0768(16) 0.109(2) 0.104(2) -0.0281(15) -0.0173(16) 0.0273(17) N1 0.0662(16) 0.100(3) 0.085(2) -0.0257(16) -0.0085(15) 0.0091(18) N2 0.0703(17) 0.112(3) 0.093(2) -0.0310(17) -0.0100(16) 0.0215(19) C1 0.0654(17) 0.098(3) 0.080(2) -0.0186(18) -0.0014(17) 0.002(2) C2 0.0667(19) 0.091(3) 0.085(2) -0.0214(18) -0.0011(19) 0.006(2) C11 0.087(2) 0.099(3) 0.086(2) -0.019(2) 0.011(2) 0.009(2) C12 0.111(3) 0.100(4) 0.124(4) -0.023(3) 0.036(3) 0.007(3) C13 0.147(5) 0.102(4) 0.160(5) -0.031(3) 0.037(4) 0.018(4) C14 0.271(12) 0.101(5) 0.298(11) -0.032(6) 0.105(10) 0.005(6) C15 0.153(6) 0.157(6) 0.347(13) -0.075(5) 0.080(8) 0.006(8) C21 0.080(2) 0.105(3) 0.096(3) -0.027(2) 0.003(2) 0.017(3) C22 0.122(4) 0.106(4) 0.144(4) -0.024(3) 0.035(4) 0.006(3) C23 0.165(6) 0.110(4) 0.183(6) -0.029(4) 0.045(5) 0.016(4) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C1 1.213(5) O2 C2 1.252(4) N1 C1 1.377(5) N1 C2 1.404(6) N1 H11 0.8600 N2 C2 1.337(5) N2 C21 1.444(6) N2 H21 0.8600 C1 C11 1.506(6) C11 C12 1.534(6) C11 H111 0.9700 C11 H112 0.9700 C12 C13 1.524(7) C12 H121 0.9700 C12 H122 0.9700 C13 C15 1.524(8) C13 C14 1.532(9) C13 H131 0.9800 C14 H141 0.9600 C14 H143 0.9600 C14 H142 0.9600 C15 H151 0.9600 C15 H152 0.9600 C15 H153 0.9600 C21 C22 1.533(6) C21 H211 0.9700 C21 H212 0.9700 C22 C23 1.524(9) C22 H221 0.9700 C22 H222 0.9700 C23 H232 0.9600 C23 H231 0.9600 C23 H233 0.9600 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C1 N1 C2 129.2(3) C1 N1 H11 115.4 C2 N1 H11 115.4 C2 N2 C21 121.7(3) C2 N2 H21 119.2 C21 N2 H21 119.2 O1 C1 N1 124.3(4) O1 C1 C11 122.7(4) N1 C1 C11 112.9(3) O2 C2 N2 125.5(4) O2 C2 N1 118.1(3) N2 C2 N1 116.4(3) C1 C11 C12 111.3(3) C1 C11 H111 109.4 C12 C11 H111 109.4 C1 C11 H112 109.4 C12 C11 H112 109.4 H111 C11 H112 108.0 C13 C12 C11 116.1(4) C13 C12 H121 108.3 C11 C12 H121 108.3 C13 C12 H122 108.3 C11 C12 H122 108.3 H121 C12 H122 107.4 C12 C13 C15 109.9(4) C12 C13 C14 111.9(4) C15 C13 C14 111.1(6) C12 C13 H131 107.9 C15 C13 H131 107.9 C14 C13 H131 107.9 C13 C14 H141 109.5 C13 C14 H143 109.5 H141 C14 H143 109.5 C13 C14 H142 109.5 H141 C14 H142 109.5 H143 C14 H142 109.5 C13 C15 H151 109.5 C13 C15 H152 109.5 H151 C15 H152 109.5 C13 C15 H153 109.5 H151 C15 H153 109.5 H152 C15 H153 109.5 N2 C21 C22 112.4(3) N2 C21 H211 109.1 C22 C21 H211 109.1 N2 C21 H212 109.1 C22 C21 H212 109.1 H211 C21 H212 107.9 C23 C22 C21 111.7(4) C23 C22 H221 109.3 C21 C22 H221 109.3 C23 C22 H222 109.3 C21 C22 H222 109.3 H221 C22 H222 107.9 C22 C23 H232 109.5 C22 C23 H231 109.5 H232 C23 H231 109.5 C22 C23 H233 109.5 H232 C23 H233 109.5 H231 C23 H233 109.5 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C2 N1 C1 O1 -0.4(7) C2 N1 C1 C11 177.4(4) C21 N2 C2 O2 -0.5(7) C21 N2 C2 N1 -178.3(4) C1 N1 C2 O2 -178.0(4) C1 N1 C2 N2 -0.1(6) O1 C1 C11 C12 89.0(5) N1 C1 C11 C12 -88.8(5) C1 C11 C12 C13 -172.6(4) C11 C12 C13 C15 -62.5(8) C11 C12 C13 C14 173.6(6) C2 N2 C21 C22 -98.4(5) N2 C21 C22 C23 -176.1(5) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H11 O2 2_666 0.86 2.02 2.873(4) 174.2 N2 H21 O1 2_565 0.86 2.40 3.092(4) 138.2