#------------------------------------------------------------------------------ #$Date: 2016-02-14 14:26:36 +0000 (Sun, 14 Feb 2016) $ #$Revision: 176435 $ #$URL: svn://www.crystallography.net/cod/cif/2/10/40/2104077.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2104077 loop_ _publ_author_name 'van der Lee, A.' 'Rolland, M.' 'Marat, X.' 'Virieux, D.' 'Volle, J.-N.' 'Pirat, J.-L.' _publ_section_title ; Structure-directing weak phosphoryl XH···O=P (X = C, N) hydrogen bonds in cyclic oxazaphospholidines and oxazaphosphinanes ; _journal_coeditor_code GP5020 _journal_issue 2 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 196 _journal_page_last 205 _journal_paper_doi 10.1107/S0108768107061770 _journal_volume 64 _journal_year 2008 _chemical_formula_moiety 'C25 H28 N1 O2 P1' _chemical_formula_sum 'C25 H28 N O2 P' _chemical_formula_weight 405.48 _chemical_name_systematic ; (2R,4S,5R)-3-tert-butyl-2-benzyl-4,5-diphenyl- [1,3,2]-oxazaphospholidine2-oxide ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _audit_creation_method CRYSTALS_ver_12.82 _cell_angle_alpha 90 _cell_angle_beta 119.04(2) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 10.284(2) _cell_length_b 21.262(4) _cell_length_c 12.768(2) _cell_measurement_reflns_used 23 _cell_measurement_temperature 175 _cell_measurement_theta_max 16.21 _cell_measurement_theta_min 10.12 _cell_volume 2440.8(9) _computing_cell_refinement 'Enraf-Nonius (1989)' _computing_data_collection 'Enraf-Nonius (1989)' _computing_data_reduction ; XCAD4 (Harms, K. \& Wocadlo, S., 1995) ; _computing_molecular_graphics 'CAMERON (Watkin et al., 1996)' _computing_publication_material 'CRYSTALS (Betteridge et al., 2003)' _computing_structure_refinement 'CRYSTALS (Betteridge et al., 2003)' _computing_structure_solution 'SIR92 (Altomare et al., 1994)' _diffrn_ambient_temperature 175 _diffrn_measured_fraction_theta_full 0.981 _diffrn_measured_fraction_theta_max 0.862 _diffrn_measurement_device_type 'Enraf-Nonius CAD4' _diffrn_measurement_method \w/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.04 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 0 _diffrn_reflns_limit_k_min -21 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -9 _diffrn_reflns_number 2619 _diffrn_reflns_theta_full 18.888 _diffrn_reflns_theta_max 21.963 _diffrn_reflns_theta_min 2.060 _diffrn_standards_decay_% 0.4 _diffrn_standards_interval_count 0 _diffrn_standards_interval_time 60 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.131 _exptl_absorpt_correction_T_max 0.91 _exptl_absorpt_correction_T_min 0.81 _exptl_absorpt_correction_type psi-scan _exptl_crystal_colour 'translucent pale white' _exptl_crystal_density_diffrn 1.103 _exptl_crystal_description needle _exptl_crystal_F_000 864 _exptl_crystal_size_max 0.37 _exptl_crystal_size_mid 0.07 _exptl_crystal_size_min 0.04 _refine_diff_density_max 0.46 _refine_diff_density_min -0.52 _refine_ls_extinction_method None _refine_ls_goodness_of_fit_ref 1.1637 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 132 _refine_ls_number_reflns 1037 _refine_ls_number_restraints 19 _refine_ls_R_factor_all 0.2390 _refine_ls_R_factor_gt 0.0846 _refine_ls_shift/su_max 0.000081 _refine_ls_structure_factor_coef F _refine_ls_weighting_details ; Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982) [weight] = 1.0/[A~0~*T~0~(x)+A~1~*T~1~(x) ... +A~n-1~]*T~n-1~(x)] where A~i~ are the Chebychev coefficients listed below and x= Fcalc/Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)^2^]^2^ A~i~ are: 17.0 7.24 12.9 7.66 1.45 ; _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.2384 _refine_ls_wR_factor_gt 0.0913 _refine_ls_wR_factor_ref 0.0913 _reflns_number_gt 1037 _reflns_number_total 2576 _reflns_threshold_expression I>2.0\s(I) _cod_data_source_file gp5020.cif _cod_data_source_block VI _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 2440.9(9) _cod_original_sg_symbol_H-M 'P 1 21/c 1 ' _cod_original_formula_sum 'C25 H28 N1 O2 P1' _cod_database_code 2104077 loop_ _symmetry_equiv_pos_as_xyz x,y,z -x,-y,-z -x,y+1/2,-z+1/2 x,-y+1/2,z+1/2 loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy O O1 0.8002(8) 0.0350(3) 0.6399(8) 0.0321 Uani 1.0000 P P2 0.6633(3) 0.08665(14) 0.5753(3) 0.0246 Uani 1.0000 N N3 0.7835(10) 0.1483(4) 0.6371(8) 0.026(3) Uiso 1.0000 C C4 0.9529(12) 0.1281(5) 0.7093(8) 0.025(3) Uiso 1.0000 C C5 0.9364(12) 0.0603(5) 0.6500(11) 0.023(3) Uiso 1.0000 O O6 0.5496(8) 0.0837(4) 0.4280(7) 0.0317 Uani 1.0000 C C7 0.7392(12) 0.2114(5) 0.5688(10) 0.022(3) Uiso 1.0000 C C8 0.8529(13) 0.2599(5) 0.6696(11) 0.030(3) Uiso 1.0000 C C9 0.7382(14) 0.2116(6) 0.4434(12) 0.038(3) Uiso 1.0000 C C10 0.5789(12) 0.2293(6) 0.5374(11) 0.030(3) Uiso 1.0000 C C11 0.5700(12) 0.0688(5) 0.6634(11) 0.027(3) Uiso 1.0000 C C12 0.4261(11) 0.1119(5) 0.6198(8) 0.024(3) Uiso 1.0000 C C13 0.2991(10) 0.1080(5) 0.5022(9) 0.026(3) Uiso 1.0000 C C14 0.1754(13) 0.1481(5) 0.4626(11) 0.043(4) Uiso 1.0000 C C15 0.1901(13) 0.1906(6) 0.5526(9) 0.039(4) Uiso 1.0000 C C16 0.3141(11) 0.1926(6) 0.6716(10) 0.036(3) Uiso 1.0000 C C17 0.4374(12) 0.1522(5) 0.7126(10) 0.033(3) Uiso 1.0000 C C18 1.0752(12) 0.0169(5) 0.7358(9) 0.026(3) Uiso 1.0000 C C19 1.1034(13) -0.0132(5) 0.8432(9) 0.032(3) Uiso 1.0000 C C20 1.2290(11) -0.0492(5) 0.9196(11) 0.038(4) Uiso 1.0000 C C21 1.3397(14) -0.0548(6) 0.8862(11) 0.045(4) Uiso 1.0000 C C22 1.3141(13) -0.0253(6) 0.7786(10) 0.046(4) Uiso 1.0000 C C23 1.1868(11) 0.0107(6) 0.7037(11) 0.035(3) Uiso 1.0000 C C24 1.0479(10) 0.1345(5) 0.8555(8) 0.021(3) Uiso 1.0000 C C25 0.9904(13) 0.1347(5) 0.9367(9) 0.032(3) Uiso 1.0000 C C26 1.0755(11) 0.1353(5) 1.0652(9) 0.033(3) Uiso 1.0000 C C27 1.2335(11) 0.1358(6) 1.1331(12) 0.038(4) Uiso 1.0000 C C28 1.2958(15) 0.1383(6) 1.0567(10) 0.048(4) Uiso 1.0000 C C29 1.2069(10) 0.1369(5) 0.9282(9) 0.030(3) Uiso 1.0000 H H57 0.9276 0.0640 0.5697 0.0312 Uiso 1.0000 H H58 1.0041 0.1536 0.6774 0.0302 Uiso 1.0000 H H32 0.8323 0.3023 0.6390 0.0386 Uiso 1.0000 H H31 0.9533 0.2497 0.6898 0.0386 Uiso 1.0000 H H30 0.8445 0.2581 0.7414 0.0386 Uiso 1.0000 H H37 0.7112 0.2524 0.4065 0.0468 Uiso 1.0000 H H38 0.8356 0.2013 0.4563 0.0468 Uiso 1.0000 H H36 0.6690 0.1810 0.3899 0.0468 Uiso 1.0000 H H35 0.5541 0.2691 0.4963 0.0369 Uiso 1.0000 H H33 0.5725 0.2324 0.6101 0.0369 Uiso 1.0000 H H34 0.5105 0.1980 0.4857 0.0369 Uiso 1.0000 H H51 0.6384 0.0752 0.7478 0.0344 Uiso 1.0000 H H50 0.5391 0.0251 0.6489 0.0344 Uiso 1.0000 H H56 0.2976 0.0778 0.4490 0.0327 Uiso 1.0000 H H55 0.0936 0.1466 0.3859 0.0492 Uiso 1.0000 H H53 0.3144 0.2221 0.7255 0.0440 Uiso 1.0000 H H52 0.5153 0.1520 0.7902 0.0385 Uiso 1.0000 H H45 1.0310 -0.0086 0.8661 0.0432 Uiso 1.0000 H H46 1.2384 -0.0683 0.9884 0.0504 Uiso 1.0000 H H47 1.4266 -0.0769 0.9330 0.0559 Uiso 1.0000 H H49 1.1766 0.0301 0.6344 0.0426 Uiso 1.0000 H H39 0.8878 0.1344 0.9030 0.0409 Uiso 1.0000 H H41 1.2890 0.1348 1.2161 0.0452 Uiso 1.0000 H H43 1.3984 0.1410 1.0908 0.0538 Uiso 1.0000 H H40 1.0233 0.1355 1.1075 0.0389 Uiso 1.0000 H H44 1.2581 0.1378 0.8849 0.0391 Uiso 1.0000 H H48 1.3863 -0.0300 0.7553 0.0568 Uiso 1.0000 H H54 0.1132 0.2190 0.5326 0.0515 Uiso 1.0000 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.020(5) 0.010(4) 0.059(6) -0.004(3) 0.013(5) -0.002(4) P2 0.0208(18) 0.0154(15) 0.036(2) 0.0010(16) 0.0123(17) -0.0005(17) O6 0.040(5) 0.028(5) 0.035(6) 0.000(4) 0.024(5) -0.002(4) loop_ _atom_type_symbol _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C 0.0033 0.0016 'International Tables Vol C 4.2.6.8 and 6.1.1.4' H 0.0000 0.0000 'International Tables Vol C 4.2.6.8 and 6.1.1.4' N 0.0061 0.0033 'International Tables Vol C 4.2.6.8 and 6.1.1.4' O 0.0106 0.0060 'International Tables Vol C 4.2.6.8 and 6.1.1.4' P 0.1023 0.0942 'International Tables Vol C 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag P2 O1 C5 110.5(6) yes O1 P2 N3 91.6(4) yes O1 P2 O6 120.0(5) yes N3 P2 O6 120.2(5) yes O1 P2 C11 97.3(5) yes N3 P2 C11 110.6(5) yes O6 P2 C11 113.3(5) yes P2 N3 C4 113.9(7) yes P2 N3 C7 117.2(7) yes C4 N3 C7 120.3(8) yes N3 C4 C5 97.8(7) yes N3 C4 C24 121.3(8) yes C5 C4 C24 118.8(9) yes N3 C4 H58 105.8 no C5 C4 H58 105.0 no C24 C4 H58 106.6 no C4 C5 O1 104.6(8) yes C4 C5 C18 109.9(9) yes O1 C5 C18 110.5(9) yes C4 C5 H57 110.7 no O1 C5 H57 110.0 no C18 C5 H57 111.0 no N3 C7 C8 101.7(9) yes N3 C7 C9 115.3(9) yes C8 C7 C9 116.4(9) yes N3 C7 C10 110.3(9) yes C8 C7 C10 108.5(9) yes C9 C7 C10 104.6(9) yes C7 C8 H32 109.9 no C7 C8 H31 109.7 no H32 C8 H31 108.5 no C7 C8 H30 111.5 no H32 C8 H30 108.6 no H31 C8 H30 108.5 no C7 C9 H37 110.7 no C7 C9 H38 109.2 no H37 C9 H38 108.7 no C7 C9 H36 110.6 no H37 C9 H36 108.9 no H38 C9 H36 108.6 no C7 C10 H35 109.0 no C7 C10 H33 109.2 no H35 C10 H33 110.0 no C7 C10 H34 109.9 no H35 C10 H34 108.8 no H33 C10 H34 109.8 no P2 C11 C12 109.8(7) yes P2 C11 H51 109.9 no C12 C11 H51 110.9 no P2 C11 H50 107.6 no C12 C11 H50 108.7 no H51 C11 H50 109.9 no C11 C12 C13 123.4(9) yes C11 C12 C17 111.7(8) yes C13 C12 C17 124.8(10) yes C12 C13 C14 123.1(10) yes C12 C13 H56 119.2 no C14 C13 H56 117.6 no C13 C14 C15 112.0(11) yes C13 C14 H55 123.8 no C15 C14 H55 124.1 no C14 C15 C16 124.7(12) yes C14 C15 H54 116.9 no C16 C15 H54 118.3 no C15 C16 C17 123.6(12) yes C15 C16 H53 119.0 no C17 C16 H53 117.3 no C12 C17 C16 111.4(10) yes C12 C17 H52 124.8 no C16 C17 H52 123.8 no C5 C18 C19 128.3(9) yes C5 C18 C23 116.0(9) yes C19 C18 C23 115.5(11) yes C18 C19 C20 127.4(12) yes C18 C19 H45 116.2 no C20 C19 H45 116.4 no C19 C20 C21 116.2(12) yes C19 C20 H46 122.1 no C21 C20 H46 121.7 no C20 C21 C22 117.6(12) yes C20 C21 H47 121.2 no C22 C21 H47 121.3 no C21 C22 C23 124.9(12) yes C21 C22 H48 117.5 no C23 C22 H48 117.6 no C22 C23 C18 118.3(11) yes C22 C23 H49 121.4 no C18 C23 H49 120.2 no C4 C24 C25 127.0(9) yes C4 C24 C29 126.9(9) yes C25 C24 C29 106.0(9) yes C24 C25 C26 126.5(11) yes C24 C25 H39 116.5 no C26 C25 H39 117.0 no C25 C26 C27 125.3(12) yes C25 C26 H40 117.5 no C27 C26 H40 117.2 no C26 C27 C28 110.4(12) yes C26 C27 H41 125.7 no C28 C27 H41 123.9 no C27 C28 C29 122.6(13) yes C27 C28 H43 118.4 no C29 C28 H43 119.0 no C28 C29 C24 129.1(11) yes C28 C29 H44 116.6 no C24 C29 H44 114.3 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag O1 P2 1.655(8) yes O1 C5 1.447(13) yes P2 N3 1.710(10) yes P2 O6 1.665(9) yes P2 C11 1.837(11) yes N3 C4 1.585(14) yes N3 C7 1.542(14) yes C4 C5 1.599(15) yes C4 C24 1.640(9) yes C4 H58 0.972 no C5 C18 1.604(15) yes C5 H57 0.987 no C7 C8 1.621(15) yes C7 C9 1.597(17) yes C7 C10 1.544(15) yes C8 H32 0.964 no C8 H31 0.960 no C8 H30 0.962 no C9 H37 0.960 no C9 H38 0.958 no C9 H36 0.961 no C10 H35 0.962 no C10 H33 0.964 no C10 H34 0.960 no C11 C12 1.594(14) yes C11 H51 0.969 no C11 H50 0.969 no C12 C13 1.437(9) yes C12 C17 1.420(9) yes C13 C14 1.405(9) yes C13 H56 0.929 no C14 C15 1.413(9) yes C14 H55 0.931 no C15 C16 1.434(9) yes C15 H54 0.927 no C16 C17 1.406(9) yes C16 H53 0.930 no C17 H52 0.923 no C18 C19 1.409(9) yes C18 C23 1.400(9) yes C19 C20 1.409(9) yes C19 H45 0.928 no C20 C21 1.401(9) yes C20 H46 0.929 no C21 C22 1.413(9) yes C21 H47 0.927 no C22 C23 1.413(9) yes C22 H48 0.930 no C23 H49 0.936 no C24 C25 1.420(9) yes C24 C29 1.436(9) yes C25 C26 1.437(9) yes C25 H39 0.927 no C26 C27 1.423(9) yes C26 H40 0.928 no C27 C28 1.404(9) yes C27 H41 0.928 no C28 C29 1.440(9) yes C28 H43 0.928 no C29 H44 0.931 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag C11 H50 O6 2_656 0.9700 2.5100 3.463(14) 169.00 yes C13 H56 O1 2_656 0.9300 2.6400 3.432(13) 143.00 yes