#------------------------------------------------------------------------------ #$Date: 2011-09-17 21:27:16 +0100 (Sat, 17 Sep 2011) $ #$Revision: 26029 $ #$URL: svn://www.crystallography.net/cod/cif/2/2104190.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2104190 loop_ _publ_author_name 'Cobo, Justo' 'Trilleras, Jorge' 'Quiroga, Jairo' 'Marchal, Antonio' 'Nogueras, Manuel' 'Low, John N.' 'Glidewell, Christopher' _publ_section_title ; N^6^-Substituted 2-amino-4-chloro-5-formylpyrimidines: puckered versus planar pyrimidine rings, and hydrogen-bonded aggregation in zero, one, two and three dimensions ; _journal_coeditor_code BM5057 _journal_issue 5 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 596 _journal_page_last 609 _journal_volume 64 _journal_year 2008 _chemical_formula_moiety 'C9 H11 Cl N4 O2' _chemical_formula_sum 'C9 H11 Cl N4 O2' _chemical_formula_weight 242.67 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 90.00 _cell_angle_beta 97.962(9) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 7.3540(5) _cell_length_b 8.2910(13) _cell_length_c 17.276(3) _cell_measurement_reflns_used 2411 _cell_measurement_temperature 120(2) _cell_measurement_theta_max 27.53 _cell_measurement_theta_min 3.41 _cell_volume 1043.2(3) _computing_cell_refinement 'DIRAX/LSQ (Duisenberg et al., 2000)' _computing_data_collection 'COLLECT (Hooft, 1999)' _computing_data_reduction 'EVALCCD (Duisenberg et al., 2003)' _computing_molecular_graphics 'PLATON (Spek, 2003)' _computing_publication_material 'SHELXL-97 and PRPKAPPA (Ferguson, 1999)' _computing_structure_refinement 'OSCAIL (McArdle, 2003) and SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'Sir2004 (Burla et al., 2005)' _diffrn_ambient_temperature 120(2) _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_device_type 'Bruker-Nonius KappaCCD' _diffrn_measurement_method '\f & \w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'Bruker-Nonius FR591 rotating anode' _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0566 _diffrn_reflns_av_sigmaI/netI 0.0335 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 22 _diffrn_reflns_limit_l_min -22 _diffrn_reflns_number 23197 _diffrn_reflns_theta_full 27.53 _diffrn_reflns_theta_max 27.53 _diffrn_reflns_theta_min 3.41 _diffrn_standards_decay_% 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.357 _exptl_absorpt_correction_T_max 0.916 _exptl_absorpt_correction_T_min 0.862 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'SADABS 2.10 (Sheldrick, 2003)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.545 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 504 _exptl_crystal_size_max 0.43 _exptl_crystal_size_mid 0.27 _exptl_crystal_size_min 0.25 _refine_diff_density_max 0.255 _refine_diff_density_min -0.297 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.084 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 145 _refine_ls_number_reflns 2411 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.084 _refine_ls_R_factor_all 0.0608 _refine_ls_R_factor_gt 0.0380 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0287P)^2^+0.8135P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0775 _refine_ls_wR_factor_ref 0.0873 _reflns_number_gt 1847 _reflns_number_total 2411 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file bm5057.cif _[local]_cod_data_source_block III _[local]_cod_cif_authors_sg_H-M 'P 21/c' _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_absorpt_correction_type' value 'Multi-scan' changed to 'multi-scan' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2104190 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy Cl Cl4 0.04078(6) 0.11154(6) 0.38668(3) 0.02457(14) Uani d . 1 O O51 0.04412(17) 0.62528(15) 0.41908(8) 0.0199(3) Uani d . 1 O O64 0.55062(17) 0.80546(16) 0.24959(8) 0.0220(3) Uani d . 1 N N1 0.55786(19) 0.39370(17) 0.43026(8) 0.0141(3) Uani d . 1 N N2 0.6843(2) 0.16390(19) 0.48805(9) 0.0178(3) Uani d . 1 N N3 0.3866(2) 0.14625(18) 0.42907(9) 0.0168(3) Uani d . 1 N N61 0.42737(19) 0.61957(18) 0.36997(9) 0.0154(3) Uani d . 1 C C2 0.5403(2) 0.2400(2) 0.44905(10) 0.0153(4) Uani d . 1 C C4 0.2386(2) 0.2298(2) 0.40523(10) 0.0164(4) Uani d . 1 C C5 0.2268(2) 0.3973(2) 0.39611(10) 0.0150(4) Uani d . 1 C C6 0.4057(2) 0.4716(2) 0.39821(10) 0.0148(4) Uani d . 1 C C51 0.0596(2) 0.4806(2) 0.40591(10) 0.0174(4) Uani d . 1 C C62 0.2953(2) 0.6987(2) 0.31075(11) 0.0184(4) Uani d . 1 C C63 0.3810(2) 0.7207(2) 0.23665(11) 0.0203(4) Uani d . 1 C C65 0.6784(2) 0.7207(2) 0.30431(11) 0.0204(4) Uani d . 1 C C66 0.6050(2) 0.7030(2) 0.38147(11) 0.0171(4) Uani d . 1 H H2A 0.7710 0.2258 0.5093 0.021 Uiso d R 1 H H2B 0.6663 0.0700 0.5067 0.021 Uiso d R 1 H H51 -0.0492 0.4176 0.4018 0.021 Uiso calc R 1 H H62A 0.2604 0.8050 0.3303 0.022 Uiso calc R 1 H H62B 0.1830 0.6320 0.2998 0.022 Uiso calc R 1 H H63A 0.4017 0.6134 0.2143 0.024 Uiso calc R 1 H H63B 0.2944 0.7805 0.1980 0.024 Uiso calc R 1 H H65A 0.7964 0.7801 0.3125 0.024 Uiso calc R 1 H H65B 0.7015 0.6126 0.2833 0.024 Uiso calc R 1 H H66A 0.6935 0.6410 0.4184 0.021 Uiso calc R 1 H H66B 0.5903 0.8109 0.4043 0.021 Uiso calc R 1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cl4 0.0143(2) 0.0211(2) 0.0371(3) -0.00387(19) -0.00087(18) 0.0013(2) O51 0.0151(6) 0.0197(7) 0.0248(7) 0.0019(5) 0.0027(5) -0.0005(6) O64 0.0183(7) 0.0262(7) 0.0212(7) -0.0034(6) 0.0021(5) 0.0081(6) N1 0.0118(7) 0.0165(7) 0.0143(7) 0.0015(6) 0.0026(6) 0.0021(6) N2 0.0134(7) 0.0168(8) 0.0231(8) -0.0009(6) 0.0019(6) 0.0032(6) N3 0.0133(7) 0.0179(8) 0.0192(8) -0.0002(6) 0.0014(6) 0.0009(6) N61 0.0102(7) 0.0190(8) 0.0169(7) -0.0009(6) 0.0017(6) 0.0033(6) C2 0.0129(8) 0.0194(9) 0.0143(9) 0.0008(7) 0.0047(7) -0.0006(7) C4 0.0133(8) 0.0210(9) 0.0151(9) -0.0026(7) 0.0024(7) -0.0003(7) C5 0.0113(8) 0.0185(9) 0.0151(8) 0.0004(7) 0.0019(7) 0.0011(7) C6 0.0145(8) 0.0178(9) 0.0124(8) 0.0008(7) 0.0033(7) -0.0022(7) C51 0.0115(8) 0.0229(10) 0.0175(9) -0.0003(7) 0.0009(7) 0.0010(7) C62 0.0140(8) 0.0201(9) 0.0209(10) 0.0023(7) 0.0014(7) 0.0057(7) C63 0.0177(9) 0.0235(10) 0.0189(9) -0.0018(8) 0.0000(7) 0.0042(8) C65 0.0146(9) 0.0250(10) 0.0218(10) 0.0000(8) 0.0029(7) 0.0041(8) C66 0.0145(8) 0.0180(9) 0.0188(9) -0.0008(7) 0.0018(7) 0.0017(7) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C63 O64 C65 110.16(14) no C2 N1 C6 117.34(15) no C2 N2 H2A 115.1 no C2 N2 H2B 117.7 no H2A N2 H2B 121.6 no C4 N3 C2 113.49(15) no C6 N61 C62 124.36(15) no C6 N61 C66 122.13(15) no C62 N61 C66 112.04(14) no N1 C2 N2 118.77(16) no N1 C2 N3 125.90(16) no N2 C2 N3 115.27(16) no N3 C4 C5 126.66(16) no N3 C4 Cl4 113.34(14) no C5 C4 Cl4 119.97(13) no C4 C5 C51 120.22(16) no C4 C5 C6 112.20(15) no C51 C5 C6 125.43(16) no N61 C6 N1 117.17(16) no N61 C6 C5 122.34(16) no N1 C6 C5 120.48(16) no O51 C51 C5 126.31(17) no O51 C51 H51 116.8 no C5 C51 H51 116.8 no N61 C62 C63 109.34(15) no N61 C62 H62A 109.8 no C63 C62 H62A 109.8 no N61 C62 H62B 109.8 no C63 C62 H62B 109.8 no H62A C62 H62B 108.3 no O64 C63 C62 112.66(15) no O64 C63 H63A 109.1 no C62 C63 H63A 109.1 no O64 C63 H63B 109.1 no C62 C63 H63B 109.1 no H63A C63 H63B 107.8 no O64 C65 C66 110.48(15) no O64 C65 H65A 109.6 no C66 C65 H65A 109.6 no O64 C65 H65B 109.6 no C66 C65 H65B 109.6 no H65A C65 H65B 108.1 no N61 C66 C65 110.25(15) no N61 C66 H66A 109.6 no C65 C66 H66A 109.6 no N61 C66 H66B 109.6 no C65 C66 H66B 109.6 no H66A C66 H66B 108.1 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag Cl4 C4 1.7466(18) no O51 C51 1.229(2) no O64 C63 1.422(2) no O64 C65 1.423(2) no N1 C2 1.326(2) no N1 C6 1.344(2) no N2 C2 1.333(2) no N2 H2A 0.8601 no N2 H2B 0.86 no N3 C4 1.308(2) no N3 C2 1.376(2) no N61 C6 1.338(2) no N61 C62 1.464(2) no N61 C66 1.467(2) no C4 C5 1.399(3) no C5 C51 1.441(2) no C5 C6 1.449(2) no C51 H51 0.95 no C62 C63 1.514(3) no C62 H62A 0.99 no C62 H62B 0.99 no C63 H63A 0.99 no C63 H63B 0.99 no C65 C66 1.513(3) no C65 H65A 0.99 no C65 H65B 0.99 no C66 H66A 0.99 no C66 H66B 0.99 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N2 H2A O51 3_666 0.86 2.11 2.955(2) 169 no N2 H2B N3 3_656 0.86 2.17 3.023(2) 171 no loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C6 N1 C2 N2 -173.30(15) no C6 N1 C2 N3 9.7(3) no C4 N3 C2 N1 -15.8(3) no C4 N3 C2 N2 167.08(15) no C2 N3 C4 C5 2.6(3) no C2 N3 C4 Cl4 -175.63(12) no N3 C4 C5 C51 -150.49(18) no Cl4 C4 C5 C51 27.6(2) no N3 C4 C5 C6 13.7(3) no Cl4 C4 C5 C6 -168.16(13) no C62 N61 C6 N1 157.70(16) no C66 N61 C6 N1 -7.4(2) no C62 N61 C6 C5 -23.3(3) no C66 N61 C6 C5 171.66(16) no C2 N1 C6 N61 -171.45(15) no C2 N1 C6 C5 9.5(2) no C4 C5 C6 N61 161.18(16) no C51 C5 C6 N61 -35.6(3) no C4 C5 C6 N1 -19.8(2) no C51 C5 C6 N1 143.43(18) no C4 C5 C51 O51 160.36(18) no C6 C5 C51 O51 -1.7(3) no C6 N61 C62 C63 -113.98(18) no C66 N61 C62 C63 52.4(2) no C65 O64 C63 C62 59.5(2) no N61 C62 C63 O64 -55.1(2) no C63 O64 C65 C66 -59.81(19) no C6 N61 C66 C65 112.30(18) no C62 N61 C66 C65 -54.43(19) no O64 C65 C66 N61 57.5(2) no