#------------------------------------------------------------------------------ #$Date: 2011-09-28 15:24:46 +0100 (Wed, 28 Sep 2011) $ #$Revision: 26848 $ #$URL: svn://www.crystallography.net/cod/cif/2/10/48/2104879.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_2104879 loop_ _publ_author_name 'Budesinsky, Milos' 'Cisarova, Ivana' 'Podlaha, Jaroslav' 'Borremans, Frans' 'Martins, Jos\'e C.' 'Waroquier, Michel' 'Pauwels, Ewald' _publ_section_title ; Structures of cyclic dipeptides: an X-ray and computational study of cis- and trans-cyclo(Pip-Phe), cyclo(Pro-Phe) and their N-methyl derivatives ; _journal_issue 6 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 662 _journal_page_last 677 _journal_volume 66 _journal_year 2010 _chemical_formula_moiety 'C16 H20 N2 O2' _chemical_formula_sum 'C16 H20 N2 O2' _chemical_formula_weight 272.34 _chemical_name_systematic ; ? ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 10.0530(3) _cell_length_b 10.8372(2) _cell_length_c 13.3352(5) _cell_measurement_reflns_used 1930 _cell_measurement_temperature 150(2) _cell_measurement_theta_max 27.5 _cell_measurement_theta_min 1 _cell_volume 1452.82(7) _computing_cell_refinement 'COLLECT and DENZO' _computing_data_collection 'COLLECT (Hooft, 1998) and DENZO (Otwinowski & Minor, 1997)' _computing_data_reduction 'COLLECT and DENZO' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SIR92 (Altomare et al., 1994)' _diffrn_ambient_temperature 150(2) _diffrn_detector_area_resol_mean 9.091 _diffrn_measured_fraction_theta_full 0.996 _diffrn_measured_fraction_theta_max 0.996 _diffrn_measurement_device_type 'Nonius KappaCCD area detector' _diffrn_measurement_method '\f and \w scans to fill the Ewald sphere' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0340 _diffrn_reflns_av_sigmaI/netI 0.0236 _diffrn_reflns_limit_h_max 13 _diffrn_reflns_limit_h_min -13 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min -14 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 19589 _diffrn_reflns_theta_full 27.50 _diffrn_reflns_theta_max 27.50 _diffrn_reflns_theta_min 2.42 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.083 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.245 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 584 _exptl_crystal_size_max 0.35 _exptl_crystal_size_mid 0.35 _exptl_crystal_size_min 0.2 _refine_diff_density_max 0.110 _refine_diff_density_min -0.146 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 0.0(10) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.063 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 182 _refine_ls_number_reflns 3329 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.063 _refine_ls_R_factor_all 0.0413 _refine_ls_R_factor_gt 0.0345 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0412P)^2^+0.1777P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0792 _refine_ls_wR_factor_ref 0.0836 _reflns_number_gt 3001 _reflns_number_total 3329 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file so5040.cif _[local]_cod_data_source_block 2b _cod_database_code 2104879 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' 'x+1/2, -y+1/2, -z' '-x, y+1/2, -z+1/2' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group N N1 0.76966(11) 0.78748(9) 0.10030(8) 0.0309(2) Uani d . 1 . . C C2 0.71461(13) 0.88638(11) 0.14480(10) 0.0318(3) Uani d . 1 . . C C3 0.63673(12) 0.86737(11) 0.24015(10) 0.0307(3) Uani d . 1 . . H H3 0.5556 0.9170 0.2348 0.037 Uiso calc R 1 . . N N4 0.59584(9) 0.74034(9) 0.25791(8) 0.0272(2) Uani d . 1 . . C C5 0.65930(11) 0.64213(11) 0.22008(9) 0.0254(2) Uani d . 1 . . C C6 0.76476(12) 0.66229(10) 0.14093(9) 0.0269(2) Uani d . 1 . . H H6 0.8514 0.6445 0.1714 0.032 Uiso calc R 1 . . C C7 0.74331(15) 0.57026(12) 0.05532(10) 0.0388(3) Uani d . 1 . . H H7A 0.7484 0.4869 0.0815 0.047 Uiso calc R 1 . . H H7B 0.6551 0.5819 0.0273 0.047 Uiso calc R 1 . . C C8 0.8463(2) 0.58622(16) -0.02691(13) 0.0584(5) Uani d . 1 . . H H8A 0.9339 0.5667 -0.0009 0.070 Uiso calc R 1 . . H H8B 0.8272 0.5299 -0.0816 0.070 Uiso calc R 1 . . C C9 0.8446(2) 0.71804(16) -0.06530(12) 0.0554(4) Uani d . 1 . . H H9A 0.9137 0.7287 -0.1154 0.066 Uiso calc R 1 . . H H9B 0.7595 0.7352 -0.0967 0.066 Uiso calc R 1 . . C C10 0.86717(16) 0.80670(15) 0.01999(12) 0.0469(4) Uani d . 1 . . H H10A 0.9562 0.7952 0.0465 0.056 Uiso calc R 1 . . H H10B 0.8603 0.8907 -0.0046 0.056 Uiso calc R 1 . . C C11 0.71812(14) 0.91938(12) 0.32945(11) 0.0356(3) Uani d . 1 . . H H11A 0.7317 1.0072 0.3197 0.043 Uiso calc R 1 . . H H11B 0.6678 0.9084 0.3909 0.043 Uiso calc R 1 . . C C12 0.85125(13) 0.85690(11) 0.34014(10) 0.0316(3) Uani d . 1 . . C C13 0.96202(14) 0.90234(12) 0.29004(12) 0.0379(3) Uani d . 1 . . H H13 0.9553 0.9753 0.2537 0.046 Uiso calc R 1 . . C C14 1.08261(14) 0.84019(14) 0.29353(13) 0.0438(4) Uani d . 1 . . H H14 1.1561 0.8717 0.2598 0.053 Uiso calc R 1 . . C C15 1.09351(15) 0.73154(14) 0.34716(13) 0.0460(4) Uani d . 1 . . H H15 1.1740 0.6893 0.3491 0.055 Uiso calc R 1 . . C C16 0.98416(16) 0.68598(13) 0.39784(13) 0.0442(4) Uani d . 1 . . H H16 0.9913 0.6130 0.4341 0.053 Uiso calc R 1 . . C C17 0.86397(14) 0.74835(12) 0.39499(11) 0.0365(3) Uani d . 1 . . H H17 0.7912 0.7174 0.4300 0.044 Uiso calc R 1 . . C C18 0.49168(14) 0.72095(14) 0.33300(11) 0.0393(3) Uani d . 1 . . H H18A 0.4422 0.6479 0.3166 0.059 Uiso calc R 1 . . H H18B 0.4329 0.7908 0.3336 0.059 Uiso calc R 1 . . H H18C 0.5316 0.7115 0.3979 0.059 Uiso calc R 1 . . O O2 0.72732(11) 0.99202(9) 0.11236(9) 0.0460(3) Uani d . 1 . . O O5 0.63248(9) 0.53580(8) 0.24505(7) 0.0360(2) Uani d . 1 . . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0321(5) 0.0303(5) 0.0305(5) -0.0033(4) 0.0036(5) 0.0031(4) C2 0.0271(6) 0.0284(6) 0.0400(7) -0.0032(5) -0.0070(5) 0.0034(5) C3 0.0257(6) 0.0241(6) 0.0424(7) 0.0033(5) -0.0017(5) -0.0031(5) N4 0.0233(4) 0.0267(5) 0.0315(5) -0.0007(4) 0.0033(4) -0.0012(4) C5 0.0226(5) 0.0260(6) 0.0276(6) 0.0009(5) -0.0026(5) 0.0006(5) C6 0.0235(5) 0.0282(6) 0.0288(6) 0.0016(5) 0.0009(5) 0.0013(5) C7 0.0503(9) 0.0337(7) 0.0324(7) 0.0060(6) 0.0028(6) -0.0066(5) C8 0.0748(12) 0.0610(10) 0.0395(9) 0.0158(9) 0.0208(9) -0.0068(8) C9 0.0637(10) 0.0679(11) 0.0346(8) 0.0045(9) 0.0180(8) 0.0050(7) C10 0.0422(8) 0.0568(9) 0.0418(8) -0.0049(7) 0.0136(7) 0.0108(7) C11 0.0342(7) 0.0294(6) 0.0431(8) 0.0024(5) -0.0012(6) -0.0106(6) C12 0.0326(6) 0.0285(6) 0.0338(7) 0.0003(5) -0.0059(6) -0.0094(5) C13 0.0348(7) 0.0316(7) 0.0474(8) -0.0046(5) -0.0057(6) -0.0022(6) C14 0.0302(7) 0.0446(8) 0.0564(9) -0.0030(6) -0.0012(7) -0.0104(7) C15 0.0347(7) 0.0410(8) 0.0623(10) 0.0069(6) -0.0142(7) -0.0143(7) C16 0.0502(9) 0.0345(7) 0.0479(9) 0.0035(6) -0.0172(7) -0.0003(7) C17 0.0394(7) 0.0383(7) 0.0320(7) -0.0031(6) -0.0047(6) -0.0025(6) C18 0.0315(7) 0.0449(8) 0.0414(8) -0.0004(6) 0.0107(6) -0.0037(6) O2 0.0470(6) 0.0285(5) 0.0624(7) -0.0050(4) -0.0031(6) 0.0122(4) O5 0.0362(5) 0.0273(4) 0.0444(5) -0.0022(4) 0.0080(4) 0.0046(4) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag C2 N1 C6 . . 124.22(11) ? C2 N1 C10 . . 118.97(11) ? C6 N1 C10 . . 115.15(11) ? O2 C2 N1 . . 122.94(13) ? O2 C2 C3 . . 118.53(12) ? N1 C2 C3 . . 118.51(11) ? N4 C3 C2 . . 114.39(10) ? N4 C3 C11 . . 111.58(11) ? C2 C3 C11 . . 108.91(10) ? N4 C3 H3 . . 107.2 ? C2 C3 H3 . . 107.2 ? C11 C3 H3 . . 107.2 ? C5 N4 C3 . . 123.75(10) ? C5 N4 C18 . . 118.96(10) ? C3 N4 C18 . . 116.67(10) ? O5 C5 N4 . . 122.57(11) ? O5 C5 C6 . . 118.58(10) ? N4 C5 C6 . . 118.82(10) ? N1 C6 C5 . . 114.62(10) ? N1 C6 C7 . . 109.45(10) ? C5 C6 C7 . . 109.13(10) ? N1 C6 H6 . . 107.8 ? C5 C6 H6 . . 107.8 ? C7 C6 H6 . . 107.8 ? C8 C7 C6 . . 111.61(12) ? C8 C7 H7A . . 109.3 ? C6 C7 H7A . . 109.3 ? C8 C7 H7B . . 109.3 ? C6 C7 H7B . . 109.3 ? H7A C7 H7B . . 108.0 ? C9 C8 C7 . . 110.07(13) ? C9 C8 H8A . . 109.6 ? C7 C8 H8A . . 109.6 ? C9 C8 H8B . . 109.6 ? C7 C8 H8B . . 109.6 ? H8A C8 H8B . . 108.2 ? C10 C9 C8 . . 110.13(14) ? C10 C9 H9A . . 109.6 ? C8 C9 H9A . . 109.6 ? C10 C9 H9B . . 109.6 ? C8 C9 H9B . . 109.6 ? H9A C9 H9B . . 108.1 ? N1 C10 C9 . . 111.11(13) ? N1 C10 H10A . . 109.4 ? C9 C10 H10A . . 109.4 ? N1 C10 H10B . . 109.4 ? C9 C10 H10B . . 109.4 ? H10A C10 H10B . . 108.0 ? C12 C11 C3 . . 112.21(10) ? C12 C11 H11A . . 109.2 ? C3 C11 H11A . . 109.2 ? C12 C11 H11B . . 109.2 ? C3 C11 H11B . . 109.2 ? H11A C11 H11B . . 107.9 ? C13 C12 C17 . . 118.62(13) ? C13 C12 C11 . . 120.49(12) ? C17 C12 C11 . . 120.76(12) ? C14 C13 C12 . . 120.82(13) ? C14 C13 H13 . . 119.6 ? C12 C13 H13 . . 119.6 ? C15 C14 C13 . . 120.01(14) ? C15 C14 H14 . . 120.0 ? C13 C14 H14 . . 120.0 ? C16 C15 C14 . . 119.64(14) ? C16 C15 H15 . . 120.2 ? C14 C15 H15 . . 120.2 ? C15 C16 C17 . . 120.41(14) ? C15 C16 H16 . . 119.8 ? C17 C16 H16 . . 119.8 ? C16 C17 C12 . . 120.48(14) ? C16 C17 H17 . . 119.8 ? C12 C17 H17 . . 119.8 ? N4 C18 H18A . . 109.5 ? N4 C18 H18B . . 109.5 ? H18A C18 H18B . . 109.5 ? N4 C18 H18C . . 109.5 ? H18A C18 H18C . . 109.5 ? H18B C18 H18C . . 109.5 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag N1 C2 . 1.3442(17) ? N1 C6 . 1.4618(15) ? N1 C10 . 1.4667(17) ? C2 O2 . 1.2305(15) ? C2 C3 . 1.5074(19) ? C3 N4 . 1.4561(15) ? C3 C11 . 1.5509(19) ? C3 H3 . 0.9800 ? N4 C5 . 1.3396(15) ? N4 C18 . 1.4640(16) ? C5 O5 . 1.2294(14) ? C5 C6 . 1.5118(17) ? C6 C7 . 1.5312(17) ? C6 H6 . 0.9800 ? C7 C8 . 1.518(2) ? C7 H7A . 0.9700 ? C7 H7B . 0.9700 ? C8 C9 . 1.518(2) ? C8 H8A . 0.9700 ? C8 H8B . 0.9700 ? C9 C10 . 1.506(2) ? C9 H9A . 0.9700 ? C9 H9B . 0.9700 ? C10 H10A . 0.9700 ? C10 H10B . 0.9700 ? C11 C12 . 1.5067(18) ? C11 H11A . 0.9700 ? C11 H11B . 0.9700 ? C12 C13 . 1.3887(19) ? C12 C17 . 1.3912(19) ? C13 C14 . 1.388(2) ? C13 H13 . 0.9300 ? C14 C15 . 1.382(2) ? C14 H14 . 0.9300 ? C15 C16 . 1.382(2) ? C15 H15 . 0.9300 ? C16 C17 . 1.385(2) ? C16 H16 . 0.9300 ? C17 H17 . 0.9300 ? C18 H18A . 0.9600 ? C18 H18B . 0.9600 ? C18 H18C . 0.9600 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA C3 H3 O5 4_655 0.98 2.30 3.2703(14) 169.1 C8 H8B O5 2_664 0.97 2.45 3.3228(19) 149.1 C15 H15 O2 4_745 0.93 2.41 3.2053(17) 143.1 C18 H18A O2 4_645 0.96 2.58 3.3961(17) 143.0