#------------------------------------------------------------------------------ #$Date: 2012-09-06 14:56:02 +0100 (Thu, 06 Sep 2012) $ #$Revision: 65858 $ #$URL: svn://www.crystallography.net/cod/cif/2/10/51/2105166.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2105166 loop_ _publ_author_name 'Tutughamiarso, Maya' 'Egert, Ernst' _publ_section_title ; Cocrystals of 5-fluorocytosine. II. Coformers with variable hydrogen-bonding sites ; _journal_coeditor_code GP5053 _journal_issue 4 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 444 _journal_page_last 452 _journal_volume 68 _journal_year 2012 _chemical_formula_moiety 'C4 H4 F N3 O, C2 H5 N3 O2, C2 H6 O S' _chemical_formula_sum 'C8 H15 F N6 O4 S' _chemical_formula_weight 310.32 _chemical_name_systematic ; ; ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 111.163(15) _cell_angle_beta 96.337(15) _cell_angle_gamma 105.703(16) _cell_formula_units_Z 2 _cell_length_a 8.4065(17) _cell_length_b 8.9045(18) _cell_length_c 10.6441(19) _cell_measurement_reflns_used 4300 _cell_measurement_temperature 173(2) _cell_measurement_theta_max 25.87 _cell_measurement_theta_min 3.39 _cell_volume 695.8(3) _computing_cell_refinement 'X-Area (Stoe & Cie, 2001)' _computing_data_collection 'X-Area (Stoe & Cie, 2001)' _computing_data_reduction 'X-Area (Stoe & Cie, 2001)' _computing_molecular_graphics 'Mercury (Macrae et al., 2008) and XP (Sheldrick, 2008);' _computing_structure_refinement 'SHELXL97 (Sheldrick, 2008)' _computing_structure_solution 'SHELXS97 (Sheldrick, 2008)' _diffrn_ambient_temperature 173(2) _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.982 _diffrn_measurement_device_type 'STOE IPDS II two-circle-diffractometer' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.1437 _diffrn_reflns_av_sigmaI/netI 0.1509 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 4530 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.74 _diffrn_reflns_theta_min 3.38 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.268 _exptl_absorpt_correction_T_max 0.9483 _exptl_absorpt_correction_T_min 0.8557 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'MULABS (Blessing, 1995; Spek, 2009)' _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.481 _exptl_crystal_density_method 'not measured' _exptl_crystal_description needle _exptl_crystal_F_000 324 _exptl_crystal_size_max 0.60 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.619 _refine_diff_density_min -0.852 _refine_ls_extinction_coef 0.07(2) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 0.970 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 208 _refine_ls_number_reflns 2617 _refine_ls_number_restraints 8 _refine_ls_restrained_S_all 0.969 _refine_ls_R_factor_all 0.1310 _refine_ls_R_factor_gt 0.0943 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1896P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.2447 _refine_ls_wR_factor_ref 0.2820 _reflns_number_gt 1669 _reflns_number_total 2617 _reflns_threshold_expression I>2\s(I) _iucr_refine_instructions_details ; TITL mt7-53 in P-1 CELL 0.71073 8.4065 8.9045 10.6441 111.163 96.337 105.703 ZERR 2.00 0.0017 0.0018 0.0019 0.015 0.015 0.016 LATT 1 SFAC C H N O F S UNIT 16 30 12 8 2 2 REM gelbe Nadel SIZE 0.2 0.3 0.6 ACTA 50 L.S. 10 BOND $H CONF FMAP 2 PLAN 10 TEMP -100 DFIX 0.88 0.02 N1 H11 N1 H12 DFIX 0.88 0.02 N3 H3 N1' H1' DFIX 0.88 0.02 N5 H51 N5 H52 DFIX 0.88 0.02 N41' H41 N41' H42 EQIV $1 x+1, y, z EQIV $2 x-1, y, z EQIV $3 -x+1, -y, -z+2 HTAB N1' O21_$1 HTAB N41' O21 HTAB N41' O1A HTAB N1 O21'_$2 HTAB N1 O41 HTAB N3 N3' HTAB N5 O41_$3 HTAB N5 O21' WGHT 0.189600 EXTI 0.066558 FVAR 0.56843 N1' 3 0.871570 0.255742 0.540471 11.00000 0.02334 0.04820 = 0.02680 0.01964 0.00751 0.01167 H1' 2 0.967159 0.238747 0.557195 11.00000 -1.20000 C2' 1 0.755591 0.220978 0.616781 11.00000 0.02138 0.04449 = 0.02875 0.01967 0.00480 0.00788 O21' 4 0.798157 0.187252 0.716771 11.00000 0.02942 0.06016 = 0.03675 0.03330 0.01083 0.02078 N3' 3 0.597905 0.231429 0.585202 11.00000 0.01944 0.03450 = 0.02988 0.01504 0.00164 0.00719 C4' 1 0.557198 0.273801 0.480487 11.00000 0.02416 0.03144 = 0.02768 0.01392 0.00594 0.00945 N41' 3 0.402934 0.282295 0.451962 11.00000 0.02512 0.05506 = 0.03570 0.03056 0.00712 0.01663 H41 2 0.360384 0.298023 0.380799 11.00000 -1.20000 H42 2 0.346726 0.288088 0.518507 11.00000 -1.20000 C5' 1 0.681409 0.315446 0.404977 11.00000 0.03167 0.04128 = 0.02542 0.02012 0.00615 0.01222 F51' 5 0.635890 0.362507 0.301987 11.00000 0.04015 0.05547 = 0.03857 0.03339 0.01115 0.01911 C6' 1 0.835484 0.303983 0.435237 11.00000 0.02850 0.03575 = 0.02503 0.01560 0.00720 0.00280 AFIX 43 H6' 2 0.917904 0.328793 0.384765 11.00000 -1.20000 AFIX 0 N1 3 0.068261 0.064143 0.751745 11.00000 0.02459 0.05325 = 0.03912 0.03017 0.00799 0.01413 H11 2 0.080596 0.014918 0.808647 11.00000 -1.20000 H12 2 -0.029425 0.079459 0.728612 11.00000 -1.20000 C2 1 0.195929 0.130556 0.701985 11.00000 0.02127 0.03448 = 0.02513 0.01324 0.00291 0.00863 O21 4 0.178447 0.195473 0.618685 11.00000 0.02454 0.05965 = 0.04127 0.03466 0.01009 0.01359 N3 3 0.354478 0.119753 0.742411 11.00000 0.01775 0.04378 = 0.02832 0.02317 0.00264 0.00607 H3 2 0.420923 0.151194 0.691010 11.00000 -1.20000 C4 1 0.402765 0.061117 0.840335 11.00000 0.02978 0.03268 = 0.02279 0.01326 0.00136 0.00890 O41 4 0.303547 0.008804 0.906284 11.00000 0.02911 0.05335 = 0.03489 0.03039 0.01034 0.01683 N5 3 0.563946 0.064698 0.858611 11.00000 0.02027 0.06201 = 0.03715 0.03145 0.00251 0.00920 H51 2 0.587274 0.027666 0.921933 11.00000 -1.20000 H52 2 0.616877 0.075942 0.794926 11.00000 -1.20000 S1A 6 0.120390 0.278304 0.122865 11.00000 0.04795 0.04195 = 0.03839 0.01998 0.01088 0.01085 O1A 4 0.164692 0.339486 0.278510 11.00000 0.04266 0.08632 = 0.04065 0.03983 0.01132 0.03038 C1A 1 -0.044288 0.358718 0.088054 11.00000 0.03749 0.05842 = 0.03742 0.02741 -0.01069 0.00027 AFIX 137 H1A1 2 -0.147714 0.299067 0.108473 11.00000 -1.50000 H1A2 2 -0.066928 0.339865 -0.009724 11.00000 -1.50000 H1A3 2 -0.008702 0.481405 0.146287 11.00000 -1.50000 AFIX 0 C2A 1 0.288428 0.416042 0.083822 11.00000 0.04841 0.05450 = 0.03604 0.01510 0.01498 0.00640 AFIX 137 H2A1 2 0.309386 0.535317 0.145613 11.00000 -1.50000 H2A2 2 0.255417 0.400174 -0.012545 11.00000 -1.50000 H2A3 2 0.392079 0.387714 0.097115 11.00000 -1.50000 HKLF 4 REM mt7-53 in P-1 REM R1 = 0.0943 for 1669 Fo > 4sig(Fo) and 0.1310 for all 2617 data REM 208 parameters refined using 8 restraints END ; _[local]_cod_data_source_file gp5053.cif _[local]_cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 1891 2012-01-12 08:04:46Z andrius ; _cod_original_cell_volume 695.8(2) _cod_database_code 2105166 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_symmetry_multiplicity N N1' 0.8716(5) 0.2557(6) 0.5405(4) 0.0314(10) Uani d D 1 1 H H1' 0.967(4) 0.239(7) 0.557(6) 0.038 Uiso d D 1 1 C C2' 0.7556(6) 0.2210(7) 0.6168(5) 0.0309(11) Uani d . 1 1 O O21' 0.7982(4) 0.1873(5) 0.7168(3) 0.0365(9) Uani d . 1 1 N N3' 0.5979(5) 0.2314(5) 0.5852(4) 0.0281(9) Uani d . 1 1 C C4' 0.5572(6) 0.2738(6) 0.4805(5) 0.0272(10) Uani d . 1 1 N N41' 0.4029(5) 0.2823(6) 0.4520(4) 0.0343(10) Uani d D 1 1 H H41 0.360(7) 0.298(7) 0.381(4) 0.041 Uiso d D 1 1 H H42 0.347(7) 0.288(8) 0.519(4) 0.041 Uiso d D 1 1 C C5' 0.6814(6) 0.3154(7) 0.4050(5) 0.0309(11) Uani d . 1 1 F F51' 0.6359(4) 0.3625(4) 0.3020(3) 0.0396(8) Uani d . 1 1 C C6' 0.8355(6) 0.3040(6) 0.4352(5) 0.0305(11) Uani d . 1 1 H H6' 0.9179 0.3288 0.3848 0.037 Uiso calc R 1 1 N N1 0.0683(5) 0.0641(6) 0.7517(4) 0.0353(10) Uani d D 1 1 H H11 0.081(8) 0.015(7) 0.809(5) 0.042 Uiso d D 1 1 H H12 -0.029(5) 0.079(7) 0.729(6) 0.042 Uiso d D 1 1 C C2 0.1959(6) 0.1306(6) 0.7020(4) 0.0270(10) Uani d . 1 1 O O21 0.1784(4) 0.1955(5) 0.6187(3) 0.0375(9) Uani d . 1 1 N N3 0.3545(5) 0.1198(5) 0.7424(4) 0.0286(9) Uani d D 1 1 H H3 0.421(6) 0.151(7) 0.691(5) 0.034 Uiso d D 1 1 C C4 0.4028(6) 0.0611(6) 0.8403(4) 0.0286(10) Uani d . 1 1 O O41 0.3035(4) 0.0088(5) 0.9063(3) 0.0345(9) Uani d . 1 1 N N5 0.5639(5) 0.0647(6) 0.8586(4) 0.0378(11) Uani d D 1 1 H H51 0.587(8) 0.028(7) 0.922(5) 0.045 Uiso d D 1 1 H H52 0.617(7) 0.076(8) 0.795(5) 0.045 Uiso d D 1 1 S S1A 0.12039(19) 0.27830(19) 0.12286(14) 0.0425(5) Uani d . 1 1 O O1A 0.1647(5) 0.3395(6) 0.2785(4) 0.0503(11) Uani d . 1 1 C C1A -0.0443(7) 0.3587(8) 0.0881(6) 0.0472(15) Uani d . 1 1 H H1A1 -0.1477 0.2991 0.1085 0.071 Uiso calc R 1 1 H H1A2 -0.0669 0.3399 -0.0097 0.071 Uiso calc R 1 1 H H1A3 -0.0087 0.4814 0.1463 0.071 Uiso calc R 1 1 C C2A 0.2884(8) 0.4160(8) 0.0838(6) 0.0493(15) Uani d . 1 1 H H2A1 0.3094 0.5353 0.1456 0.074 Uiso calc R 1 1 H H2A2 0.2554 0.4002 -0.0125 0.074 Uiso calc R 1 1 H H2A3 0.3921 0.3877 0.0971 0.074 Uiso calc R 1 1 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1' 0.023(2) 0.048(3) 0.0268(19) 0.0117(18) 0.0075(15) 0.0196(19) C2' 0.021(2) 0.044(3) 0.029(2) 0.008(2) 0.0048(17) 0.020(2) O21' 0.0294(19) 0.060(2) 0.0368(18) 0.0208(17) 0.0108(14) 0.0333(18) N3' 0.0194(19) 0.034(2) 0.0299(19) 0.0072(16) 0.0016(15) 0.0150(17) C4' 0.024(2) 0.031(3) 0.028(2) 0.0095(19) 0.0059(17) 0.0139(19) N41' 0.025(2) 0.055(3) 0.036(2) 0.017(2) 0.0071(17) 0.031(2) C5' 0.032(3) 0.041(3) 0.025(2) 0.012(2) 0.0062(18) 0.020(2) F51' 0.0402(17) 0.055(2) 0.0386(15) 0.0191(14) 0.0112(12) 0.0334(15) C6' 0.028(2) 0.036(3) 0.025(2) 0.003(2) 0.0072(17) 0.016(2) N1 0.025(2) 0.053(3) 0.039(2) 0.014(2) 0.0080(17) 0.030(2) C2 0.021(2) 0.034(3) 0.025(2) 0.0086(19) 0.0029(16) 0.0132(19) O21 0.0245(18) 0.060(2) 0.0413(19) 0.0136(16) 0.0101(14) 0.0347(18) N3 0.0177(19) 0.044(3) 0.0283(19) 0.0061(17) 0.0026(14) 0.0232(19) C4 0.030(3) 0.033(3) 0.023(2) 0.009(2) 0.0014(17) 0.0133(19) O41 0.0291(18) 0.053(2) 0.0349(17) 0.0168(16) 0.0103(14) 0.0304(17) N5 0.020(2) 0.062(3) 0.037(2) 0.0092(19) 0.0025(16) 0.031(2) S1A 0.0480(9) 0.0420(9) 0.0384(8) 0.0108(6) 0.0109(6) 0.0200(6) O1A 0.043(2) 0.086(3) 0.041(2) 0.030(2) 0.0113(17) 0.040(2) C1A 0.037(3) 0.058(4) 0.037(3) 0.000(3) -0.011(2) 0.027(3) C2A 0.048(3) 0.055(4) 0.036(3) 0.006(3) 0.015(2) 0.015(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C6' N1' C2' 122.1(4) C6' N1' H1' 120(4) C2' N1' H1' 118(4) O21' C2' N3' 121.1(4) O21' C2' N1' 119.6(4) N3' C2' N1' 119.3(4) C4' N3' C2' 120.0(4) N41' C4' N3' 118.6(4) N41' C4' C5' 121.3(4) N3' C4' C5' 120.0(4) C4' N41' H41 126(4) C4' N41' H42 115(4) H41 N41' H42 119(5) C6' C5' F51' 122.1(4) C6' C5' C4' 119.9(4) F51' C5' C4' 118.0(4) C5' C6' N1' 118.6(4) C5' C6' H6' 120.7 N1' C6' H6' 120.7 C2 N1 H11 123(4) C2 N1 H12 116(4) H11 N1 H12 121(6) O21 C2 N1 123.2(4) O21 C2 N3 118.7(4) N1 C2 N3 118.0(4) C4 N3 C2 127.6(4) C4 N3 H3 124(4) C2 N3 H3 108(4) O41 C4 N5 122.3(4) O41 C4 N3 122.8(4) N5 C4 N3 114.9(4) C4 N5 H51 111(4) C4 N5 H52 117(4) H51 N5 H52 130(6) O1A S1A C1A 104.9(3) O1A S1A C2A 105.4(3) C1A S1A C2A 98.5(3) S1A C1A H1A1 109.5 S1A C1A H1A2 109.5 H1A1 C1A H1A2 109.5 S1A C1A H1A3 109.5 H1A1 C1A H1A3 109.5 H1A2 C1A H1A3 109.5 S1A C2A H2A1 109.5 S1A C2A H2A2 109.5 H2A1 C2A H2A2 109.5 S1A C2A H2A3 109.5 H2A1 C2A H2A3 109.5 H2A2 C2A H2A3 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance N1' C6' 1.369(6) N1' C2' 1.378(6) N1' H1' 0.87(2) C2' O21' 1.247(5) C2' N3' 1.367(6) N3' C4' 1.338(6) C4' N41' 1.328(6) C4' C5' 1.437(7) N41' H41 0.87(2) N41' H42 0.89(2) C5' C6' 1.340(7) C5' F51' 1.360(5) C6' H6' 0.9500 N1 C2 1.338(6) N1 H11 0.88(2) N1 H12 0.89(2) C2 O21 1.237(5) C2 N3 1.394(6) N3 C4 1.392(6) N3 H3 0.88(2) C4 O41 1.249(6) C4 N5 1.337(6) N5 H51 0.88(2) N5 H52 0.87(2) S1A O1A 1.511(4) S1A C1A 1.784(6) S1A C2A 1.798(6) C1A H1A1 0.9800 C1A H1A2 0.9800 C1A H1A3 0.9800 C2A H2A1 0.9800 C2A H2A2 0.9800 C2A H2A3 0.9800 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1' H1' O21 1_655 0.87(2) 2.01(2) 2.870(5) 172(5) N41' H42 O21 . 0.89(2) 2.04(3) 2.872(5) 156(6) N41' H41 O1A . 0.87(2) 2.06(4) 2.845(5) 149(5) N1 H12 O21' 1_455 0.89(2) 1.96(3) 2.820(5) 162(5) N1 H11 O41 . 0.88(2) 2.06(5) 2.694(5) 128(5) N3 H3 N3' . 0.88(2) 2.09(2) 2.972(5) 174(5) N5 H51 O41 2_657 0.88(2) 2.12(3) 2.982(5) 166(6) N5 H52 O21' . 0.87(2) 2.01(3) 2.834(6) 156(6) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C6' N1' C2' O21' -175.8(5) C6' N1' C2' N3' 1.3(7) O21' C2' N3' C4' 177.6(5) N1' C2' N3' C4' 0.5(7) C2' N3' C4' N41' 179.8(5) C2' N3' C4' C5' -2.7(7) N41' C4' C5' C6' -179.3(5) N3' C4' C5' C6' 3.2(8) N41' C4' C5' F51' -0.6(7) N3' C4' C5' F51' -178.1(4) F51' C5' C6' N1' 180.0(4) C4' C5' C6' N1' -1.4(8) C2' N1' C6' C5' -0.8(8) O21 C2 N3 C4 175.9(4) N1 C2 N3 C4 -6.5(8) C2 N3 C4 O41 0.0(8) C2 N3 C4 N5 179.9(5)