#------------------------------------------------------------------------------ #$Date: 2012-09-06 15:53:00 +0100 (Thu, 06 Sep 2012) $ #$Revision: 66028 $ #$URL: svn://www.crystallography.net/cod/cif/2/10/52/2105209.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2105209 loop_ _publ_author_name 'Derollez, Patrick' 'Guinet, Yannick' 'Affouard, Fr\'ed\'eric' 'Dan\`ede, Florence' 'Carpentier, Laurent' 'H\'edoux, Alain' _publ_section_title ; Structure determination of L-arabinitol by powder X-ray diffraction ; _journal_coeditor_code PS5016 _journal_issue 4 _journal_name_full 'Acta Crystallographica Section B' _journal_page_first 407 _journal_page_last 411 _journal_volume 68 _journal_year 2012 _chemical_formula_moiety 'C5 H12 O5' _chemical_formula_sum 'C5 H12 O5' _chemical_formula_weight 152.15 _chemical_name_common L-arabinitol _chemical_name_systematic ' ?' _space_group_IT_number 1 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall 'P 1' _symmetry_space_group_name_H-M 'P 1' _cell_angle_alpha 96.0388(10) _cell_angle_beta 106.8061(8) _cell_angle_gamma 96.0940(10) _cell_formula_units_Z 2 _cell_length_a 7.67982(19) _cell_length_b 9.7170(3) _cell_length_c 4.82857(13) _cell_measurement_temperature 293 _cell_volume 339.478(16) _computing_structure_refinement FULLPROF _diffrn_ambient_temperature 293 _diffrn_radiation_type 'Cu K\a' _diffrn_radiation_wavelength 1.54060 _exptl_absorpt_coefficient_mu 1.165 _pd_char_colour white _pd_instr_location ' ?' _pd_meas_2theta_range_inc 0.015000 _pd_meas_2theta_range_max 95.82000 _pd_meas_2theta_range_min 0.15500 _pd_meas_number_of_points 6379 _pd_meas_scan_method fixed _pd_proc_2theta_range_inc 0.015000 _pd_proc_2theta_range_max 95.8101 _pd_proc_2theta_range_min 0.1451 _pd_proc_ls_pref_orient_corr ' ?' _pd_proc_ls_prof_R_factor 2.9253 _pd_proc_ls_prof_wR_expected 1.2050 _pd_proc_ls_prof_wR_factor 3.9500 _pd_proc_wavelength 1.540560 _pd_spec_mounting ' ?' _pd_spec_mount_mode transmission _pd_spec_shape cylinder _refine_ls_number_parameters 97 _refine_ls_number_reflns 714 _refine_ls_number_restraints 40 _[local]_cod_data_source_file ps5016.cif _[local]_cod_data_source_block L-arabinitol _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 1891 2012-01-12 08:04:46Z andrius ; _cod_original_cell_volume 339.476(15) _cod_database_code 2105209 loop_ _symmetry_equiv_pos_as_xyz x,y,z loop_ _atom_site_type_symbol _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy C C1a 0.24650 0.14470 0.32070 0.0175(8) Uiso 1.00000 C C2a 0.4034(3) 0.2218(3) 0.5794(6) 0.0175(8) Uiso 1.00000 C C3a 0.5549(3) 0.2969(3) 0.4817(6) 0.0175(8) Uiso 1.00000 C C4a 0.7197(3) 0.3707(4) 0.7307(6) 0.0175(8) Uiso 1.00000 C C5a 0.8872(7) 0.4344(3) 0.6553(16) 0.0175(8) Uiso 1.00000 O O1a 0.1156(7) 0.0553(5) 0.4065(14) 0.0258(6) Uiso 1.00000 O O2a 0.3272(10) 0.3174(6) 0.7439(13) 0.0258(6) Uiso 1.00000 O O3a 0.4905(9) 0.4065(5) 0.3207(11) 0.0258(6) Uiso 1.00000 O O4a 0.7692(10) 0.2696(6) 0.9270(13) 0.0258(6) Uiso 1.00000 O O5a 0.9635(9) 0.3308(5) 0.5082(13) 0.0258(6) Uiso 1.00000 H HC1a 0.18240 0.21120 0.19610 0.03800 Uiso 1.00000 H H1a' 0.30240 0.07980 0.20760 0.03800 Uiso 1.00000 H HC2a 0.45250 0.16000 0.71140 0.03800 Uiso 1.00000 H HC3a 0.59330 0.23060 0.36290 0.03800 Uiso 1.00000 H HC4a 0.67190 0.44930 0.84350 0.03800 Uiso 1.00000 H HC5a 0.84240 0.51680 0.54130 0.03800 Uiso 1.00000 H H5a' 0.97940 0.47870 0.84650 0.03800 Uiso 1.00000 H HO1a 0.17408 0.00656 0.52886 0.03800 Uiso 1.00000 H HO2a 0.19235 0.33050 0.65566 0.03800 Uiso 1.00000 H HO3a 0.42901 0.37741 0.10354 0.03800 Uiso 1.00000 H HO4a 0.77643 0.19173 0.79488 0.03800 Uiso 1.00000 H HO5a 0.88683 0.31800 0.28748 0.03800 Uiso 1.00000 C C1b 0.8568(5) 0.9184(6) 0.6951(17) 0.0175(8) Uiso 1.00000 C C2b 0.6915(3) 0.8446(3) 0.7632(7) 0.0175(8) Uiso 1.00000 C C3b 0.5147(3) 0.7971(4) 0.5154(6) 0.0175(8) Uiso 1.00000 C C4b 0.3493(3) 0.7326(3) 0.5914(7) 0.0175(8) Uiso 1.00000 C C5b 0.1921(7) 0.6561(4) 0.3342(9) 0.0175(8) Uiso 1.00000 O O1b 0.7961(8) 1.0349(5) 0.5521(12) 0.0258(6) Uiso 1.00000 O O2b 0.7555(9) 0.7341(6) 0.9242(14) 0.0258(6) Uiso 1.00000 O O3b 0.5631(11) 0.6973(5) 0.3221(11) 0.0258(6) Uiso 1.00000 O O4b 0.2953(10) 0.8499(5) 0.7380(13) 0.0258(6) Uiso 1.00000 O O5b 0.1336(9) 0.7495(6) 0.1251(13) 0.0258(6) Uiso 1.00000 H HC1b 0.94930 0.96070 0.88460 0.03800 Uiso 1.00000 H H1b' 0.89210 0.85390 0.57370 0.03800 Uiso 1.00000 H HC2b 0.65020 0.91950 0.90870 0.03800 Uiso 1.00000 H HC3b 0.48170 0.87900 0.41440 0.03800 Uiso 1.00000 H HC4b 0.38760 0.67180 0.74060 0.03800 Uiso 1.00000 H HC5b 0.22660 0.57940 0.25540 0.03800 Uiso 1.00000 H H5b' 0.08270 0.63910 0.41800 0.03800 Uiso 1.00000 H HO1b 0.91038 1.04633 0.49851 0.03800 Uiso 1.00000 H HO2b 0.67756 0.72419 1.07010 0.03800 Uiso 1.00000 H HO3b 0.53865 0.60143 0.31043 0.03800 Uiso 1.00000 H HO4b 0.23234 0.81709 0.87535 0.03800 Uiso 1.00000 H HO5b 0.00079 0.74660 0.05480 0.03800 Uiso 1.00000 loop_ _atom_type_symbol _atom_type_scat_Cromer_Mann_a1 _atom_type_scat_Cromer_Mann_a2 _atom_type_scat_Cromer_Mann_a3 _atom_type_scat_Cromer_Mann_a4 _atom_type_scat_Cromer_Mann_b1 _atom_type_scat_Cromer_Mann_b2 _atom_type_scat_Cromer_Mann_b3 _atom_type_scat_Cromer_Mann_b4 _atom_type_scat_Cromer_Mann_c _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source c 2.31000 1.02000 1.58860 0.86500 20.84390 10.20750 0.56870 51.65120 0.21560 0.01700 0.00900 International_Tables_for_Crystallography_Vol.C(1991)_Tables_6.1.1.4_and_6.1.1.5 o 3.04850 2.28680 1.54630 0.86700 13.27710 5.70110 0.32390 32.90890 0.25080 0.04700 0.03200 International_Tables_for_Crystallography_Vol.C(1991)_Tables_6.1.1.4_and_6.1.1.5 h 0.49300 0.32291 0.14019 0.04081 10.51090 26.12570 3.14236 57.79970 0.00304 0.00000 0.00000 International_Tables_for_Crystallography_Vol.C(1991)_Tables_6.1.1.4_and_6.1.1.5 loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C2a C1a O1a 113.0(4) yes C2a C1a HC1a 111.3 no C2a C1a H1a' 106.4 no O1a C1a HC1a 110.0 no O1a C1a H1a' 104.9 no HC1a C1a H1a' 111.0 no C1a C2a C3a 111.8(2) yes C1a C2a O2a 107.6(5) yes C1a C2a HC2a 111.0 no C3a C2a O2a 111.7(6) yes C3a C2a HC2a 110.1 no O2a C2a HC2a 104.4 no C2a C3a C4a 114.3(3) yes C2a C3a O3a 111.0(5) yes C2a C3a HC3a 108.1 no C4a C3a O3a 103.9(4) yes C4a C3a HC3a 109.7 no O3a C3a HC3a 109.8 no C3a C4a C5a 118.1(4) yes C3a C4a O4a 105.7(5) yes C3a C4a HC4a 106.6 no C5a C4a O4a 110.5(7) yes C5a C4a HC4a 109.2 no O4a C4a HC4a 106.2 no C4a C5a O5a 112.0(7) yes C4a C5a HC5a 104.5 no C4a C5a H5a' 106.0 no O5a C5a HC5a 116.6 no O5a C5a H5a' 110.5 no HC5a C5a H5a' 106.5 no C1a O1a HO1a 108.5 no C2a O2a HO2a 118.0 no C3a O3a HO3a 115.6 no C4a O4a HO4a 100.9 no C5a O5a HO5a 106.2 no C2b C1b O1b 106.7(6) yes C2b C1b HC1b 107.7 no C2b C1b H1b' 107.0 no O1b C1b HC1b 105.3 no O1b C1b H1b' 111.8 no HC1b C1b H1b' 117.8 no C1b C2b C3b 118.7(4) yes C1b C2b O2b 106.7(7) yes C1b C2b HC2b 107.5 no C3b C2b O2b 113.1(5) yes C3b C2b HC2b 102.7 no O2b C2b HC2b 107.6 no C2b C3b C4b 117.7(3) yes C2b C3b O3b 104.3(5) yes C2b C3b HC3b 107.8 no C4b C3b O3b 109.5(7) yes C4b C3b HC3b 108.6 no O3b C3b HC3b 108.74 no C3b C4b C5b 115.3(4) yes C3b C4b O4b 103.4(6) yes C3b C4b HC4b 109.9 no C5b C4b O4b 111.8(5) yes C5b C4b HC4b 110.8 no O4b C4b HC4b 104.0 no C4b C5b O5b 109.5(5) yes C4b C5b HC5b 110.0 no C4b C5b H5b' 104.6 no O5b C5b HC5b 112.2 no O5b C5b H5b' 103.8 no HC5b C5b H5b' 116.3 no C1b O1b HO1b 89.0 no C2b O2b HO2b 105.9 no C3b O3b HO3b 125.3 no C4b O4b HO4b 109.5 no C5b O5b HO5b 113.6 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag C1a C2a 1.521(2) yes C1a O1a 1.438(6) yes C1a HC1a 1.000 no C1a H1a' 1.000 no C2a C3a 1.523(4) yes C2a O2a 1.437(8) yes C2a HC2a 0.948 no C3a C4a 1.519(3) yes C3a O3a 1.431(6) yes C3a HC3a 0.944 no C4a C5a 1.523(7) yes C4a O4a 1.440(7) yes C4a HC4a 1.050 no C5a O5a 1.441(9) yes C5a HC5a 1.051 no C5a H5a' 1.006 no O1a HO1a 0.852 no O2a HO2a 1.027 no O3a HO3a 1.013 no O4a HO4a 0.954 no O5a HO5a 1.045 no C1b C2b 1.527(6) yes C1b O1b 1.437(8) yes C1b HC1b 0.997 no C1b H1b' 0.928 no C2b C3b 1.516(3) yes C2b O2b 1.437(7) yes C2b HC2b 1.093 no C3b C4b 1.513(4) yes C3b O3b 1.427(7) yes C3b HC3b 0.994 no C4b C5b 1.517(4) yes C4b O4b 1.439(7) yes C4b HC4b 0.979 no C5b O5b 1.436(7) yes C5b HC5b 0.900 no C5b H5b' 1.038 no O1b HO1b 0.983 no O2b HO2b 1.054 no O3b HO3b 0.923 no O4b HO4b 0.986 no O5b HO5b 0.974 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O1a HO1a O4b 1_545 0.85 2.07 2.90 165.9 no O2a HO2a O5a 1_455 1.03 1.70 2.72 173.0 no O3a HO3a O2a 1_554 1.01 1.70 2.71 176.1 no O4a HO4a O1b 1_545 0.95 1.87 2.82 177.2 no O5a HO5a O4a 1_554 1.04 1.70 2.74 170.6 no O1b HO1b O1a 1_665 0.98 1.75 2.73 176.2 no O2b HO2b O3b 1_556 1.05 1.72 2.77 174.8 no O3b HO3b O3a 1_555 0.92 1.90 2.82 175.2 no O4b HO4b O5b 1_556 0.99 1.75 2.73 175.4 no O5b HO5b O2b 1_454 0.97 1.79 2.77 177.8 no loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag O1a C1a C2a C3a 170.80(10) yes O1a C1a C2a O2a -66.2(2) yes C1a C2a C3a C4a -177.4(2) yes C1a C2a C3a O3a 65.5(2) yes O2a C2a C3a C4a 62.0(2) yes O2a C2a C3a O3a -55.2(4) yes C2a C3a C4a C5a 173.2(2) yes C2a C3a C4a O4a 49.0(2) yes O3a C3a C4a C5a -65.7(2) yes O3a C3a C4a O4a 170.1(2) yes C3a C4a C5a O5a -60.1(2) yes O4a C4a C5a O5a 61.7(2) yes O1b C1b C2b C3b 54.9(2) yes O1b C1b C2b O2b -176.1(5) yes C1b C2b C3b C4b -176.1(2) yes C1b C2b C3b O3b 62.4(2) yes O2b C2b C3b C4b 57.8(2) yes O2b C2b C3b O3b -63.6(2) yes C2b C3b C4b C5b -165.9(2) yes C2b C3b C4b O4b 71.7(2) yes O3b C3b C4b C5b -47.2(4) yes O3b C3b C4b O4b -169.6(4) yes C3b C4b C5b O5b -56.9(5) yes O4b C4b C5b O5b 60.9(5) yes