#------------------------------------------------------------------------------ #$Date: 2016-02-20 03:06:23 +0000 (Sat, 20 Feb 2016) $ #$Revision: 176774 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/00/2200057.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2200057 loop_ _publ_author_name 'Girald\'es, Jos\'e' 'McLaughlin, Mark L.' 'Fronczek, Frank R.' _publ_section_title N^{\e^}-Benzyloxycarbonyl-N^{\a^}-(2-nitrobenzenesulfonyl)-L-lysine _journal_issue 1 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o48 _journal_page_last o49 _journal_paper_doi 10.1107/S1600536800018961 _journal_volume 57 _journal_year 2001 _chemical_formula_moiety 'C20 H23 N3 O8 S' _chemical_formula_sum 'C20 H23 N3 O8 S' _chemical_formula_weight 465.47 _chemical_name_systematic ; N^\a^(2-nitrobenzenesulfonyl)-N^\e^-benzyloxycarbonyl-L-lysine ; _space_group_IT_number 18 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2 2ab' _symmetry_space_group_name_H-M 'P 21 21 2' _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 11.7629(2) _cell_length_b 34.5731(6) _cell_length_c 5.3477(2) _cell_measurement_reflns_used 13981 _cell_measurement_temperature 120 _cell_measurement_theta_max 27.5 _cell_measurement_theta_min 2.5 _cell_volume 2174.80(10) _computing_cell_refinement 'DENZO and SCALEPACK (Otwinowski & Minor, 1997)' _computing_data_collection 'COLLECT (Nonius 2000)' _computing_data_reduction 'DENZO and SCALEPACK (Otwinowski & Minor, 1997)' _computing_molecular_graphics 'ORTEP-3 (Farrugia, 1997)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'direct methods using SIR (Altomare et al., 1993)' _diffrn_ambient_temperature 120 _diffrn_measured_fraction_theta_full .922 _diffrn_measured_fraction_theta_max .922 _diffrn_measurement_device 'KappaCCD (with Oxford Cryostream)' _diffrn_measurement_method ' \w scans with \k offsets' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength .71073 _diffrn_reflns_av_R_equivalents .050 _diffrn_reflns_av_sigmaI/netI .051 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min -15 _diffrn_reflns_limit_k_max 44 _diffrn_reflns_limit_k_min -44 _diffrn_reflns_limit_l_max 5 _diffrn_reflns_limit_l_min -5 _diffrn_reflns_number 13981 _diffrn_reflns_theta_full 27.5 _diffrn_reflns_theta_max 27.5 _diffrn_reflns_theta_min 3.4 _exptl_absorpt_coefficient_mu .201 _exptl_absorpt_correction_T_max .980 _exptl_absorpt_correction_T_min .937 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(HKL SCALEPACK; Otwinowski & Minor, 1997)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.422 _exptl_crystal_density_method 'not measured' _exptl_crystal_description fragment _exptl_crystal_F_000 976 _exptl_crystal_size_max .23 _exptl_crystal_size_mid .12 _exptl_crystal_size_min .10 _refine_diff_density_max .21 _refine_diff_density_min -.24 _refine_ls_abs_structure_details 'Flack (1983); 1439 Friedel pairs' _refine_ls_abs_structure_Flack -.07(7) _refine_ls_extinction_coef .0039(6) _refine_ls_extinction_method SHELXL97 _refine_ls_goodness_of_fit_ref 1.046 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 302 _refine_ls_number_reflns 4345 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.046 _refine_ls_R_factor_all .058 _refine_ls_R_factor_gt .039 _refine_ls_shift/su_max .001 _refine_ls_shift/su_mean .000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0239P)^2^+0.7661P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref .077 _reflns_number_gt 3563 _reflns_number_total 4345 _reflns_threshold_expression >2sigma(I) _cod_data_source_file na6015.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 2174.8(2) _cod_database_code 2200057 _cod_database_fobs_code 2200057 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, z' 'x+1/2, -y+1/2, -z' '-x+1/2, y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol S1 .43876(4) .677475(15) .47852(10) .02199(14) Uani d . 1 . . S O1 .44420(14) .68264(4) .7440(3) .0298(4) Uani d . 1 . . O O2 .53146(12) .69058(4) .3276(3) .0273(4) Uani d . 1 . . O O3 .26251(14) .58376(5) .2702(3) .0360(4) Uani d . 1 . . O O4 .34781(14) .57133(5) -.0963(3) .0345(4) Uani d . 1 . . O H40 .290(2) .5532(9) -.110(6) .060(9) Uiso d . 1 . . H O5 .82527(14) .47725(4) .8337(3) .0304(4) Uani d . 1 . . O O6 .95282(12) .45492(4) .5520(3) .0294(4) Uani d . 1 . . O O7 .09305(15) .68765(6) .8123(4) .0580(6) Uani d . 1 . . O O8 .22750(15) .64804(5) .7149(3) .0424(5) Uani d . 1 . . O N1 .42408(17) .63207(5) .4233(3) .0230(4) Uani d . 1 . . N H1N .371(2) .6243(7) .501(5) .040(8) Uiso d . 1 . . H N2 .81842(16) .49541(5) .4267(4) .0269(5) Uani d . 1 . . N H2N .839(2) .4895(7) .276(5) .032(7) Uiso d . 1 . . H N3 .17488(17) .67823(6) .6835(4) .0363(5) Uani d . 1 . . N C1 .43581(19) .61725(6) .1663(4) .0220(5) Uani d . 1 . . C H1 .4274 .6394 .0475 .026 Uiso calc R 1 . . H C2 .3387(2) .58930(6) .1230(5) .0261(5) Uani d . 1 . . C C3 .55223(18) .59877(6) .1248(4) .0241(5) Uani d . 1 . . C H3A .5581 .5902 -.0514 .029 Uiso calc R 1 . . H H3B .6119 .6185 .1538 .029 Uiso calc R 1 . . H C4 .57374(19) .56441(6) .2952(4) .0275(5) Uani d . 1 . . C H4A .5652 .5729 .4710 .033 Uiso calc R 1 . . H H4B .5152 .5445 .2623 .033 Uiso calc R 1 . . H C5 .69042(19) .54635(6) .2627(4) .0256(5) Uani d . 1 . . C H5A .6970 .5352 .0927 .031 Uiso calc R 1 . . H H5B .7496 .5665 .2815 .031 Uiso calc R 1 . . H C6 .70880(18) .51500(7) .4550(5) .0290(6) Uani d . 1 . . C H6A .7045 .5265 .6242 .035 Uiso calc R 1 . . H H6B .6470 .4957 .4404 .035 Uiso calc R 1 . . H C7 .86202(18) .47584(6) .6171(5) .0254(5) Uani d . 1 . . C C8 .31738(19) .70416(6) .3731(4) .0249(5) Uani d . 1 . . C C9 .20813(18) .70432(7) .4782(5) .0295(5) Uani d . 1 . . C C10 .1252(2) .72941(8) .3929(6) .0447(7) Uani d . 1 . . C H10 .0516 .7291 .4659 .054 Uiso calc R 1 . . H C11 .1496(3) .75489(8) .2017(6) .0537(8) Uani d . 1 . . C H11 .0929 .7723 .1435 .064 Uiso calc R 1 . . H C12 .2561(3) .75510(8) .0954(5) .0492(7) Uani d . 1 . . C H12 .2725 .7723 -.0382 .059 Uiso calc R 1 . . H C13 .3390(2) .73034(6) .1824(4) .0341(6) Uani d . 1 . . C H13 .4127 .7312 .1100 .041 Uiso calc R 1 . . H C14 .9993(2) .43026(7) .7471(5) .0330(6) Uani d . 1 . . C H14A .9370 .4185 .8453 .040 Uiso calc R 1 . . H H14B 1.0474 .4457 .8618 .040 Uiso calc R 1 . . H C15 1.06902(18) .39928(6) .6233(4) .0256(5) Uani d . 1 . . C C16 1.17252(19) .38867(6) .7264(4) .0281(5) Uani d . 1 . . C H16 1.2004 .4021 .8689 .034 Uiso calc R 1 . . H C17 1.2359(2) .35880(7) .6246(5) .0317(6) Uani d . 1 . . C H17 1.3061 .3515 .6988 .038 Uiso calc R 1 . . H C18 1.1968(2) .33967(7) .4152(5) .0350(6) Uani d . 1 . . C H18 1.2406 .3194 .3435 .042 Uiso calc R 1 . . H C19 1.0939(2) .34998(7) .3097(4) .0340(6) Uani d . 1 . . C H19 1.0668 .3366 .1665 .041 Uiso calc R 1 . . H C20 1.03010(18) .37977(7) .4121(4) .0293(6) Uani d . 1 . . C H20 .9597 .3869 .3380 .035 Uiso calc R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 .0248(3) .0211(3) .0201(3) .0001(2) -.0005(2) .0015(2) O1 .0403(9) .0300(9) .0193(8) -.0023(8) -.0030(8) -.0006(7) O2 .0258(8) .0265(8) .0296(9) -.0019(7) .0020(7) .0024(7) O3 .0341(9) .0370(10) .0368(10) -.0086(8) .0043(9) -.0038(8) O4 .0327(9) .0404(10) .0303(10) -.0036(8) -.0036(8) -.0103(8) O5 .0320(9) .0307(9) .0285(10) .0056(7) .0067(8) .0034(7) O6 .0250(8) .0324(8) .0308(9) .0086(7) .0055(8) .0068(7) O7 .0385(11) .0708(14) .0648(14) -.0056(10) .0281(10) -.0226(11) O8 .0453(11) .0405(11) .0414(11) -.0045(9) .0156(9) .0007(9) N1 .0261(10) .0238(10) .0191(10) .0010(9) .0029(9) .0030(8) N2 .0253(10) .0286(11) .0267(13) .0064(9) .0037(9) .0042(10) N3 .0274(11) .0430(13) .0386(13) -.0059(11) .0075(10) -.0188(11) C1 .0287(12) .0202(11) .0171(12) .0034(10) -.0002(10) .0018(9) C2 .0269(12) .0248(12) .0267(13) .0054(10) -.0044(11) .0000(11) C3 .0245(11) .0280(12) .0199(11) -.0005(10) .0031(11) -.0001(10) C4 .0276(12) .0282(12) .0267(12) .0039(10) .0006(11) .0025(10) C5 .0266(12) .0278(12) .0225(12) .0055(10) .0020(10) -.0011(11) C6 .0225(11) .0288(12) .0358(15) .0055(10) .0028(10) .0062(12) C7 .0211(11) .0202(12) .0349(15) -.0030(9) .0048(11) .0008(11) C8 .0319(13) .0226(11) .0204(12) .0041(10) -.0015(11) -.0056(10) C9 .0296(12) .0295(12) .0296(13) .0029(10) -.0013(11) -.0105(11) C10 .0293(14) .0488(16) .0560(19) .0134(13) -.0055(13) -.0257(16) C11 .063(2) .0445(17) .054(2) .0306(15) -.0231(16) -.0134(15) C12 .077(2) .0320(14) .0390(16) .0223(15) -.0072(15) .0022(12) C13 .0493(16) .0245(12) .0285(14) .0098(12) -.0005(12) -.0029(11) C14 .0351(13) .0346(14) .0293(14) .0118(11) .0010(11) .0052(12) C15 .0239(12) .0258(11) .0270(12) -.0011(10) .0039(11) .0055(10) C16 .0278(13) .0291(12) .0274(13) .0016(11) -.0027(11) -.0017(11) C17 .0282(12) .0345(13) .0323(13) .0088(11) -.0032(11) -.0030(12) C18 .0340(13) .0319(13) .0392(15) .0044(11) .0031(12) -.0075(12) C19 .0368(14) .0359(14) .0293(14) -.0055(11) -.0010(11) -.0054(11) C20 .0229(12) .0342(13) .0308(13) .0009(10) -.0022(11) .0060(11) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S .1246 .1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O2 S1 O1 119.06(10) O2 S1 N1 106.72(10) O1 S1 N1 107.98(9) O2 S1 C8 105.49(10) O1 S1 C8 106.47(10) N1 S1 C8 111.09(10) C2 O4 H40 109.0(18) C7 O6 C14 115.53(17) C1 N1 S1 120.09(15) C1 N1 H1N 116.2(19) S1 N1 H1N 108.4(18) C7 N2 C6 119.8(2) C7 N2 H2N 119.2(16) C6 N2 H2N 116.7(17) O8 N3 O7 123.0(2) O8 N3 C9 119.32(19) O7 N3 C9 117.6(2) N1 C1 C2 107.09(18) N1 C1 C3 111.42(17) C2 C1 C3 112.79(17) N1 C1 H1 108.5 C2 C1 H1 108.5 C3 C1 H1 108.5 O3 C2 O4 124.1(2) O3 C2 C1 124.1(2) O4 C2 C1 111.8(2) C4 C3 C1 112.91(17) C4 C3 H3A 109.0 C1 C3 H3A 109.0 C4 C3 H3B 109.0 C1 C3 H3B 109.0 H3A C3 H3B 107.8 C5 C4 C3 113.82(18) C5 C4 H4A 108.8 C3 C4 H4A 108.8 C5 C4 H4B 108.8 C3 C4 H4B 108.8 H4A C4 H4B 107.7 C6 C5 C4 110.31(18) C6 C5 H5A 109.6 C4 C5 H5A 109.6 C6 C5 H5B 109.6 C4 C5 H5B 109.6 H5A C5 H5B 108.1 N2 C6 C5 112.82(19) N2 C6 H6A 109.0 C5 C6 H6A 109.0 N2 C6 H6B 109.0 C5 C6 H6B 109.0 H6A C6 H6B 107.8 O5 C7 N2 124.3(2) O5 C7 O6 123.0(2) N2 C7 O6 112.7(2) C13 C8 C9 117.4(2) C13 C8 S1 114.92(18) C9 C8 S1 127.33(18) C10 C9 C8 121.1(2) C10 C9 N3 116.3(2) C8 C9 N3 122.6(2) C11 C10 C9 119.9(3) C11 C10 H10 120.1 C9 C10 H10 120.1 C12 C11 C10 119.9(3) C12 C11 H11 120.0 C10 C11 H11 120.0 C11 C12 C13 120.1(3) C11 C12 H12 119.9 C13 C12 H12 119.9 C12 C13 C8 121.6(3) C12 C13 H13 119.2 C8 C13 H13 119.2 O6 C14 C15 107.89(19) O6 C14 H14A 110.1 C15 C14 H14A 110.1 O6 C14 H14B 110.1 C15 C14 H14B 110.1 H14A C14 H14B 108.4 C16 C15 C20 118.9(2) C16 C15 C14 119.5(2) C20 C15 C14 121.5(2) C17 C16 C15 120.9(2) C17 C16 H16 119.5 C15 C16 H16 119.5 C18 C17 C16 119.8(2) C18 C17 H17 120.1 C16 C17 H17 120.1 C17 C18 C19 120.0(2) C17 C18 H18 120.0 C19 C18 H18 120.0 C18 C19 C20 120.3(2) C18 C19 H19 119.9 C20 C19 H19 119.9 C19 C20 C15 120.1(2) C19 C20 H20 119.9 C15 C20 H20 119.9 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag S1 O2 . 1.4301(15) yes S1 O1 . 1.4323(15) yes S1 N1 . 1.6065(18) yes S1 C8 . 1.791(2) yes O3 C2 . 1.207(3) yes O4 C2 . 1.331(3) yes O4 H40 . .93(3) ? O5 C7 . 1.238(3) yes O6 C7 . 1.336(3) yes O6 C14 . 1.454(3) ? O7 N3 . 1.228(3) ? O8 N3 . 1.225(3) ? N1 C1 . 1.473(3) yes N1 H1N . .80(3) ? N2 C7 . 1.326(3) yes N2 C6 . 1.464(3) yes N2 H2N . .87(2) ? N3 C9 . 1.474(3) ? C1 C2 . 1.514(3) ? C1 C3 . 1.527(3) ? C1 H1 . 1.00 ? C3 C4 . 1.519(3) ? C3 H3A . .99 ? C3 H3B . .99 ? C4 C5 . 1.518(3) ? C4 H4A . .99 ? C4 H4B . .99 ? C5 C6 . 1.509(3) ? C5 H5A . .99 ? C5 H5B . .99 ? C6 H6A . .99 ? C6 H6B . .99 ? C8 C13 . 1.387(3) ? C8 C9 . 1.403(3) ? C9 C10 . 1.383(3) ? C10 C11 . 1.380(4) ? C10 H10 . .95 ? C11 C12 . 1.376(4) ? C11 H11 . .95 ? C12 C13 . 1.379(4) ? C12 H12 . .95 ? C13 H13 . .95 ? C14 C15 . 1.503(3) ? C14 H14A . .99 ? C14 H14B . .99 ? C15 C16 . 1.386(3) ? C15 C20 . 1.393(3) ? C16 C17 . 1.385(3) ? C16 H16 . .95 ? C17 C18 . 1.380(3) ? C17 H17 . .95 ? C18 C19 . 1.382(3) ? C18 H18 . .95 ? C19 C20 . 1.387(3) ? C19 H19 . .95 ? C20 H20 . .95 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O4 H40 O5 2_664 .93(3) 1.75(3) 2.666(2) 172(3) N1 H1N O3 . .80(3) 2.26(3) 2.659(3) 111(2) N1 H1N O8 . .80(3) 2.19(3) 2.843(3) 138(2) N2 H2N O5 1_554 .87(2) 2.41(3) 3.233(3) 160(2) C1 H1 O1 1_554 1.00 2.22 3.197(3) 167 C11 H11 O1 3_466 .95 2.42 3.254(4) 146 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag O2 S1 N1 C1 -40.33(19) ? O1 S1 N1 C1 -169.43(16) ? C8 S1 N1 C1 74.18(19) ? S1 N1 C1 C2 -135.06(16) ? S1 N1 C1 C3 101.17(18) yes N1 C1 C2 O3 5.7(3) yes C3 C1 C2 O3 128.6(2) ? N1 C1 C2 O4 -173.85(17) ? C3 C1 C2 O4 -50.9(2) ? N1 C1 C3 C4 61.1(2) ? C2 C1 C3 C4 -59.4(2) ? C1 C3 C4 C5 -178.21(18) ? C3 C4 C5 C6 174.65(19) ? C7 N2 C6 C5 160.1(2) ? C4 C5 C6 N2 177.72(19) ? C6 N2 C7 O5 -11.2(3) ? C6 N2 C7 O6 170.50(18) ? C14 O6 C7 O5 6.5(3) ? C14 O6 C7 N2 -175.15(19) ? O2 S1 C8 C13 -.69(19) ? O1 S1 C8 C13 126.71(17) ? N1 S1 C8 C13 -115.97(18) ? O2 S1 C8 C9 -173.5(2) ? O1 S1 C8 C9 -46.1(2) ? N1 S1 C8 C9 71.2(2) ? C13 C8 C9 C10 .6(3) ? S1 C8 C9 C10 173.24(19) ? C13 C8 C9 N3 -179.4(2) ? S1 C8 C9 N3 -6.7(3) ? O8 N3 C9 C10 157.0(2) ? O7 N3 C9 C10 -21.4(3) ? O8 N3 C9 C8 -23.1(3) yes O7 N3 C9 C8 158.5(2) ? C8 C9 C10 C11 -.2(4) ? N3 C9 C10 C11 179.8(2) ? C9 C10 C11 C12 .4(4) ? C10 C11 C12 C13 -1.1(4) ? C11 C12 C13 C8 1.5(4) ? C9 C8 C13 C12 -1.3(3) ? S1 C8 C13 C12 -174.8(2) ? C7 O6 C14 C15 159.54(18) ? O6 C14 C15 C16 138.4(2) ? O6 C14 C15 C20 -44.1(3) yes C20 C15 C16 C17 -1.0(3) ? C14 C15 C16 C17 176.5(2) ? C15 C16 C17 C18 1.1(4) ? C16 C17 C18 C19 -.9(4) ? C17 C18 C19 C20 .6(4) ? C18 C19 C20 C15 -.5(4) ? C16 C15 C20 C19 .7(3) ? C14 C15 C20 C19 -176.7(2) ?