#------------------------------------------------------------------------------ #$Date: 2013-12-28 13:58:47 +0000 (Sat, 28 Dec 2013) $ #$Revision: 91933 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/21/2202127.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2202127 loop_ _publ_author_name 'Li, Xing' 'Cao, Rong' 'Bi, Wenhua' 'Sun, Daofeng' 'Hong, Maochun' _publ_section_title ; Triaqua(1,10-phenanthroline)sulfatocadmium(II) ; _journal_issue 5 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first m230 _journal_page_last m231 _journal_volume 59 _journal_year 2003 _chemical_formula_iupac '[Cd (S O4) (C12 H8 N2) (H2 O)3]' _chemical_formula_moiety 'C12 H14 Cd N2 O7 S' _chemical_formula_sum 'C12 H14 Cd N2 O7 S' _chemical_formula_weight 442.71 _chemical_name_systematic ; Triaqua(1,10-phenanthroline)sulfatocadmium(II) ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.1620(5) _cell_length_b 9.7458(6) _cell_length_c 19.5727(11) _cell_measurement_reflns_used 104 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 25.05 _cell_measurement_theta_min 2.08 _cell_volume 1556.91(16) _computing_cell_refinement SMART _computing_data_collection 'SMART (Siemens, 1996)' _computing_data_reduction 'SAINT (Siemens, 1994)' _computing_molecular_graphics SHELXTL _computing_publication_material SHELXTL _computing_structure_refinement SHELXTL _computing_structure_solution 'SHELXTL (Siemens, 1994)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.995 _diffrn_measured_fraction_theta_max 0.995 _diffrn_measurement_device_type 'Siemens SMART CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0459 _diffrn_reflns_av_sigmaI/netI 0.0438 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 23 _diffrn_reflns_limit_l_min -20 _diffrn_reflns_number 5071 _diffrn_reflns_theta_full 25.05 _diffrn_reflns_theta_max 25.05 _diffrn_reflns_theta_min 2.08 _diffrn_standards_decay_% none _diffrn_standards_interval_count none _diffrn_standards_interval_time none _diffrn_standards_number none _exptl_absorpt_coefficient_mu 1.574 _exptl_absorpt_correction_T_max 0.939 _exptl_absorpt_correction_T_min 0.416 _exptl_absorpt_correction_type empirical _exptl_absorpt_process_details '(SADABS; Sheldrick, 1996)' _exptl_crystal_colour 'light yellow' _exptl_crystal_density_diffrn 1.889 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 880 _exptl_crystal_size_max .36 _exptl_crystal_size_mid .18 _exptl_crystal_size_min .04 _refine_diff_density_max 0.727 _refine_diff_density_min -1.223 _refine_ls_abs_structure_details 'Flack (1983), 896 Friedel pairs' _refine_ls_abs_structure_Flack -0.05(5) _refine_ls_extinction_coef 0.0049(8) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL97 _refine_ls_goodness_of_fit_ref 1.069 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 221 _refine_ls_number_reflns 2500 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.069 _refine_ls_R_factor_gt 0.0425 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0555P)^2^+5.0252P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1048 _refine_ls_wR_factor_ref 0.1092 _reflns_number_gt 2357 _reflns_number_total 2500 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file ob6230.cif _[local]_cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2202127 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol Cd 0.36113(6) 0.54794(5) 0.81690(3) 0.0327(2) Uani d . 1 . . Cd S 0.7552(2) 0.58389(17) 0.76612(11) 0.0355(5) Uani d . 1 . . S O1 0.6020(7) 0.6548(5) 0.7864(3) 0.0392(13) Uani d . 1 . . O O2 0.7229(8) 0.4940(7) 0.7093(4) 0.0621(18) Uani d . 1 . . O O3 0.8113(8) 0.5021(7) 0.8243(4) 0.0660(19) Uani d . 1 . . O O4 0.8751(7) 0.6885(5) 0.7491(3) 0.0473(14) Uani d . 1 . . O O5 0.2055(8) 0.7136(6) 0.7694(4) 0.0561(18) Uani d . 1 . . O H5A 0.1099 0.6878 0.7677 0.084 Uiso calc R 1 . . H O6 0.3990(8) 0.4356(6) 0.7147(3) 0.0426(13) Uani d . 1 . . O H6A 0.4954 0.4415 0.7032 0.064 Uiso calc R 1 . . H O7 0.1244(8) 0.4217(6) 0.8295(4) 0.0483(15) Uani d . 1 . . O H7A 0.0448 0.4726 0.8260 0.072 Uiso calc R 1 . . H H7B 0.106(11) 0.367(9) 0.804(4) 0.03(3) Uiso d . 1 . . H C1 0.5097(13) 0.2640(10) 0.8823(5) 0.054(2) Uani d . 1 . . C H1A 0.5125 0.2352 0.8370 0.064 Uiso calc R 1 . . H C2 0.5570(15) 0.1699(11) 0.9334(6) 0.069(3) Uani d . 1 . . C H2B 0.5920 0.0820 0.9222 0.082 Uiso calc R 1 . . H C3 0.5497(16) 0.2122(12) 0.9997(6) 0.071(3) Uani d . 1 . . C H3B 0.5787 0.1518 1.0344 0.086 Uiso calc R 1 . . H C4 0.4999(13) 0.3439(11) 1.0159(5) 0.054(2) Uani d . 1 . . C C5 0.4935(16) 0.3981(13) 1.0855(5) 0.070(3) Uani d . 1 . . C H5B 0.5226 0.3412 1.1217 0.084 Uiso calc R 1 . . H C6 0.4478(14) 0.5246(15) 1.0985(5) 0.074(3) Uani d . 1 . . C H6B 0.4446 0.5551 1.1435 0.089 Uiso calc R 1 . . H C7 0.4028(11) 0.6167(11) 1.0444(4) 0.054(2) Uani d . 1 . . C C8 0.3594(15) 0.7531(11) 1.0562(5) 0.070(3) Uani d . 1 . . C H8A 0.3569 0.7868 1.1006 0.084 Uiso calc R 1 . . H C9 0.3206(16) 0.8371(11) 1.0028(6) 0.073(3) Uani d . 1 . . C H9A 0.2951 0.9289 1.0103 0.088 Uiso calc R 1 . . H C10 0.3200(13) 0.7824(10) 0.9364(5) 0.057(2) Uani d . 1 . . C H10A 0.2897 0.8388 0.9002 0.068 Uiso calc R 1 . . H C11 0.4041(10) 0.5697(9) 0.9764(4) 0.0384(18) Uani d . 1 . . C C12 0.4526(9) 0.4327(9) 0.9622(4) 0.0381(18) Uani d . 1 . . C N1 0.4621(9) 0.3894(7) 0.8952(3) 0.0367(15) Uani d . 1 . . N N2 0.3610(10) 0.6535(6) 0.9235(3) 0.0422(15) Uani d . 1 . . N H5C 0.194(18) 0.805(15) 0.769(7) 0.11(5) Uiso d . 1 . . H H6C 0.379(16) 0.346(13) 0.717(6) 0.09(4) Uiso d . 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cd 0.0334(3) 0.0319(3) 0.0329(3) -0.0004(2) -0.0001(2) 0.0030(2) S 0.0299(9) 0.0283(9) 0.0482(11) -0.0016(8) 0.0067(8) -0.0046(8) O1 0.033(3) 0.026(2) 0.058(3) 0.001(2) 0.004(3) -0.006(2) O2 0.053(4) 0.069(4) 0.065(4) -0.010(3) 0.007(3) -0.036(3) O3 0.051(4) 0.064(4) 0.083(5) 0.014(3) 0.000(4) 0.032(4) O4 0.032(3) 0.039(3) 0.071(4) 0.002(3) 0.006(3) 0.007(3) O5 0.041(4) 0.037(3) 0.091(5) -0.001(3) -0.015(3) 0.019(3) O6 0.049(3) 0.036(3) 0.043(3) -0.008(3) -0.001(3) -0.003(3) O7 0.035(3) 0.036(3) 0.074(4) -0.003(3) -0.003(3) -0.002(3) C1 0.058(6) 0.054(5) 0.049(5) 0.014(5) -0.003(5) -0.001(4) C2 0.078(8) 0.053(6) 0.075(7) 0.021(6) -0.011(6) 0.011(5) C3 0.078(8) 0.067(7) 0.069(7) 0.013(6) -0.018(6) 0.023(6) C4 0.051(6) 0.067(6) 0.044(5) 0.001(5) -0.009(4) 0.016(5) C5 0.080(8) 0.087(8) 0.042(5) 0.006(7) -0.007(6) 0.017(6) C6 0.072(7) 0.117(10) 0.033(4) 0.005(8) -0.005(4) -0.004(6) C7 0.044(5) 0.080(6) 0.038(4) -0.004(5) 0.000(4) -0.015(5) C8 0.070(7) 0.083(7) 0.055(6) 0.002(7) 0.001(6) -0.037(6) C9 0.088(9) 0.059(6) 0.073(7) 0.004(6) 0.014(6) -0.036(6) C10 0.054(6) 0.054(5) 0.062(6) 0.007(4) -0.002(5) -0.007(5) C11 0.032(4) 0.052(5) 0.031(3) -0.005(4) 0.002(3) -0.006(4) C12 0.034(4) 0.050(5) 0.030(3) -0.005(4) -0.007(3) -0.002(4) N1 0.041(4) 0.034(3) 0.035(3) 0.005(3) -0.008(3) 0.002(3) N2 0.043(4) 0.040(3) 0.043(3) 0.006(4) 0.000(4) -0.008(3) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Cd O5 . 2.255(6) yes Cd O6 . 2.301(5) yes Cd O1 . 2.303(5) yes Cd O7 . 2.303(6) yes Cd N2 . 2.325(6) yes Cd N1 . 2.327(6) yes S O2 . 1.440(6) ? S O4 . 1.452(6) ? S O3 . 1.464(7) ? S O1 . 1.483(6) ? O5 H5A . 0.8200 ? O5 H5C . 0.89(14) ? O6 H6A . 0.8200 ? O6 H6C . 0.89(13) ? O7 H7A . 0.8200 ? O7 H7B . 0.75(9) ? C1 N1 . 1.307(12) ? C1 C2 . 1.410(14) ? C1 H1A . 0.9300 ? C2 C3 . 1.363(16) ? C2 H2B . 0.9300 ? C3 C4 . 1.384(16) ? C3 H3B . 0.9300 ? C4 C12 . 1.415(12) ? C4 C5 . 1.461(15) ? C5 C6 . 1.313(17) ? C5 H5B . 0.9300 ? C6 C7 . 1.436(15) ? C6 H6B . 0.9300 ? C7 C8 . 1.395(14) ? C7 C11 . 1.406(11) ? C8 C9 . 1.365(16) ? C8 H8A . 0.9300 ? C9 C10 . 1.405(14) ? C9 H9A . 0.9300 ? C10 N2 . 1.325(11) ? C10 H10A . 0.9300 ? C11 N2 . 1.366(10) ? C11 C12 . 1.419(12) ? C12 N1 . 1.381(10) ? loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cd Cd -0.8075 1.2024 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O5 Cd O6 93.3(3) yes O5 Cd O1 92.9(2) yes O6 Cd O1 82.8(2) yes O5 Cd O7 87.3(2) yes O6 Cd O7 87.2(2) yes O1 Cd O7 170.0(2) yes O5 Cd N2 93.0(3) yes O6 Cd N2 171.9(3) yes O1 Cd N2 91.9(2) yes O7 Cd N2 98.1(3) yes O5 Cd N1 161.2(3) yes O6 Cd N1 102.1(2) yes O1 Cd N1 99.7(2) yes O7 Cd N1 82.7(2) yes N2 Cd N1 72.7(2) yes O2 S O4 111.9(4) ? O2 S O3 109.1(4) ? O4 S O3 110.5(4) ? O2 S O1 109.6(4) ? O4 S O1 107.6(3) ? O3 S O1 108.0(4) ? S O1 Cd 125.3(3) ? Cd O5 H5A 109.5 ? Cd O5 H5C 140(9) ? H5A O5 H5C 101.8 ? Cd O6 H6A 109.5 ? Cd O6 H6C 114(8) ? H6A O6 H6C 104.8 ? Cd O7 H7A 109.5 ? Cd O7 H7B 119(7) ? H7A O7 H7B 103.0 ? N1 C1 C2 123.6(9) ? N1 C1 H1A 118.2 ? C2 C1 H1A 118.2 ? C3 C2 C1 117.8(10) ? C3 C2 H2B 121.1 ? C1 C2 H2B 121.1 ? C2 C3 C4 120.8(9) ? C2 C3 H3B 119.6 ? C4 C3 H3B 119.6 ? C3 C4 C12 118.5(9) ? C3 C4 C5 124.1(9) ? C12 C4 C5 117.5(9) ? C6 C5 C4 122.0(10) ? C6 C5 H5B 119.0 ? C4 C5 H5B 119.0 ? C5 C6 C7 121.1(9) ? C5 C6 H6B 119.5 ? C7 C6 H6B 119.5 ? C8 C7 C11 118.0(9) ? C8 C7 C6 122.5(9) ? C11 C7 C6 119.5(10) ? C9 C8 C7 120.3(9) ? C9 C8 H8A 119.9 ? C7 C8 H8A 119.9 ? C8 C9 C10 118.8(9) ? C8 C9 H9A 120.6 ? C10 C9 H9A 120.6 ? N2 C10 C9 122.4(10) ? N2 C10 H10A 118.8 ? C9 C10 H10A 118.8 ? N2 C11 C7 121.4(8) ? N2 C11 C12 119.0(6) ? C7 C11 C12 119.6(8) ? N1 C12 C4 120.2(8) ? N1 C12 C11 119.3(7) ? C4 C12 C11 120.4(7) ? C1 N1 C12 119.1(7) ? C1 N1 Cd 126.8(6) ? C12 N1 Cd 113.7(5) ? C10 N2 C11 119.2(7) ? C10 N2 Cd 126.2(6) ? C11 N2 Cd 114.6(5) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O5 H5A O4 1_455 0.82 1.95 2.736(6) 160 yes O5 H5C O2 3_656 0.89(14) 2.01(10) 2.825(6) 151(4) yes O6 H6A O2 1_555 0.82 1.93 2.706(6) 158 yes O6 H6C O1 3_646 0.89(13) 1.87(10) 2.737(6) 164(4) yes O7 H7A O3 1_455 0.82 1.97 2.674(7) 151 yes O7 H7B O4 3_646 0.75(9) 2.03(10) 2.744(6) 161(3) yes _cod_database_fobs_code 2202127 _journal_paper_doi 10.1107/S1600536803007360