#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2202216.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2202216 loop_ _publ_author_name '\"Ozcan, \"Ozlem' 'G\"ultekin, Zeynep' 'Frey, Wolfgang' 'H\"okelek, Tuncer' _publ_section_title ; 2-Methoxymethyl-1,3-dithiolane 1,1,3,3-tetraoxide ; _journal_issue 6 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o747 _journal_page_last o749 _journal_volume 59 _journal_year 2003 _chemical_formula_iupac 'C5 H10 O5 S2' _chemical_formula_moiety 'C5 H10 O5 S2' _chemical_formula_sum 'C5 H10 O5 S2' _chemical_formula_weight 214.25 _chemical_name_systematic ; 2-Methoxymethyl-1,3-dithiolane 1,1,3,3-tetraoxide ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 77.910(11) _cell_angle_beta 85.013(11) _cell_angle_gamma 86.886(12) _cell_formula_units_Z 4 _cell_length_a 6.7699(10) _cell_length_b 9.1736(13) _cell_length_c 14.5311(19) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 15 _cell_measurement_theta_min 10 _cell_volume 878.5(2) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Siemens, 1996)' _computing_data_reduction 'SHELXTL (Bruker, 1997)' _computing_molecular_graphics ; ORTEP-3 for Windows (Farrugia, 1997) ; _computing_publication_material ; WinGX publication routines (Farrugia, 1999) ; _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Siemens P4' _diffrn_measurement_method 'non-profiled \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0318 _diffrn_reflns_av_sigmaI/netI 0.0204 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 20 _diffrn_reflns_limit_l_min -20 _diffrn_reflns_number 5527 _diffrn_reflns_theta_full 30.00 _diffrn_reflns_theta_max 30.00 _diffrn_reflns_theta_min 1.44 _diffrn_standards_decay_% 1 _diffrn_standards_interval_count 50 _diffrn_standards_number 2 _exptl_absorpt_coefficient_mu 0.587 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.620 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 448 _exptl_crystal_size_max 0.35 _exptl_crystal_size_mid 0.25 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.695 _refine_diff_density_min -0.429 _refine_ls_extinction_coef 0.077(4) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL97 _refine_ls_goodness_of_fit_ref 1.119 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 298 _refine_ls_number_reflns 5125 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.119 _refine_ls_R_factor_all 0.0420 _refine_ls_R_factor_gt 0.0371 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0491P)^2^+0.3797P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0999 _refine_ls_wR_factor_ref 0.1034 _reflns_number_gt 4609 _reflns_number_total 5125 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file wn6152.cif _[local]_cod_data_source_block I _cod_database_code 2202216 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_occupancy _atom_site_type_symbol H11 0.080(3) 0.861(2) 0.5810(15) 0.032(5) Uiso d 1 H H32 0.261(3) 0.577(3) 0.4364(15) 0.033(5) Uiso d 1 H H31 0.257(4) 0.701(3) 0.349(2) 0.054(7) Uiso d 1 H H41' -0.467(5) 0.308(3) 0.891(2) 0.069(8) Uiso d 1 H H51' -0.560(6) 0.562(4) 0.936(3) 0.100(12) Uiso d 1 H H11' -0.721(3) 0.116(3) 0.9613(18) 0.043(6) Uiso d 1 H H42 -0.155(4) 0.665(3) 0.6361(19) 0.054(7) Uiso d 1 H H21 0.552(4) 0.707(3) 0.4385(17) 0.046(6) Uiso d 1 H H21' -1.052(4) -0.017(3) 0.7966(19) 0.051(7) Uiso d 1 H H41 0.034(4) 0.552(3) 0.6574(19) 0.057(7) Uiso d 1 H H22' -0.947(4) -0.076(3) 0.8890(19) 0.052(7) Uiso d 1 H H42' -0.626(4) 0.354(3) 0.8214(19) 0.047(7) Uiso d 1 H H31' -0.713(4) -0.116(4) 0.771(2) 0.068(8) Uiso d 1 H H32' -0.758(4) 0.050(3) 0.718(2) 0.062(8) Uiso d 1 H H22 0.424(4) 0.852(3) 0.4259(18) 0.047(6) Uiso d 1 H H51 -0.137(5) 0.679(4) 0.858(3) 0.084(10) Uiso d 1 H H52' -0.788(6) 0.596(4) 0.962(3) 0.091(11) Uiso d 1 H H53' -0.729(5) 0.591(4) 0.855(3) 0.098(13) Uiso d 1 H H52 -0.291(8) 0.675(6) 0.794(4) 0.135(18) Uiso d 1 H H53 -0.149(5) 0.535(5) 0.820(3) 0.092(11) Uiso d 1 H S1 0.03484(6) 0.75288(4) 0.45759(3) 0.02964(11) Uani d 1 S S2' -0.96229(6) 0.16515(5) 0.86322(3) 0.03316(11) Uani d 1 S S1' -0.56738(6) 0.03167(5) 0.83906(3) 0.03333(11) Uani d 1 S S2 0.37186(6) 0.72763(5) 0.57137(3) 0.03454(11) Uani d 1 S C1 0.1041(2) 0.76086(18) 0.57463(11) 0.0294(3) Uani d 1 C O1 -0.12218(19) 0.65123(17) 0.46501(10) 0.0434(3) Uani d 1 O O2 0.0040(2) 0.90410(15) 0.40803(10) 0.0482(4) Uani d 1 O O2' -0.5049(2) -0.09416(17) 0.90770(11) 0.0503(4) Uani d 1 O C3 0.2598(2) 0.67979(19) 0.41120(12) 0.0314(3) Uani d 1 C C1' -0.7129(3) 0.1595(2) 0.90059(12) 0.0325(3) Uani d 1 C O3 0.4112(2) 0.57355(18) 0.61281(11) 0.0516(4) Uani d 1 O O4' -1.1054(2) 0.16727(19) 0.94196(11) 0.0513(4) Uani d 1 O O3' -0.9746(2) 0.27897(16) 0.77932(11) 0.0482(3) Uani d 1 O O1' -0.4189(2) 0.1115(2) 0.77474(11) 0.0550(4) Uani d 1 O C2' -0.9511(3) -0.0111(2) 0.83097(14) 0.0378(4) Uani d 1 C C3' -0.7546(3) -0.0220(3) 0.77515(13) 0.0398(4) Uani d 1 C O5' -0.7444(3) 0.39508(18) 0.93943(13) 0.0564(4) Uani d 1 O O5 -0.0060(3) 0.70611(18) 0.73632(10) 0.0512(4) Uani d 1 O C2 0.4231(3) 0.7548(2) 0.44704(13) 0.0367(3) Uani d 1 C O4 0.4615(2) 0.8401(2) 0.60728(12) 0.0577(4) Uani d 1 O C4 -0.0141(3) 0.6557(2) 0.65228(13) 0.0388(4) Uani d 1 C C4' -0.6260(3) 0.3129(2) 0.88228(17) 0.0471(4) Uani d 1 C C5 -0.1551(6) 0.6408(4) 0.8056(2) 0.0670(8) Uani d 1 C C5' -0.6988(7) 0.5484(3) 0.9188(3) 0.0763(9) Uani d 1 C loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 0.02937(19) 0.02793(18) 0.03225(19) 0.00579(13) -0.00780(14) -0.00714(14) S2' 0.0332(2) 0.0349(2) 0.0309(2) 0.00354(15) -0.00221(14) -0.00710(15) S1' 0.0301(2) 0.0416(2) 0.02823(19) 0.00257(15) -0.00227(14) -0.00809(15) S2 0.0304(2) 0.0412(2) 0.0347(2) 0.00355(15) -0.00834(15) -0.01283(16) C1 0.0306(7) 0.0273(7) 0.0314(7) 0.0033(5) -0.0040(6) -0.0091(6) O1 0.0305(6) 0.0530(8) 0.0499(8) -0.0050(5) -0.0072(5) -0.0151(6) O2 0.0701(10) 0.0316(6) 0.0424(7) 0.0178(6) -0.0194(7) -0.0058(5) O2' 0.0587(9) 0.0492(8) 0.0423(7) 0.0177(7) -0.0148(6) -0.0086(6) C3 0.0309(7) 0.0328(8) 0.0315(7) 0.0009(6) -0.0014(6) -0.0101(6) C1' 0.0356(8) 0.0369(8) 0.0260(7) 0.0005(6) -0.0044(6) -0.0082(6) O3 0.0501(8) 0.0521(9) 0.0480(8) 0.0208(7) -0.0104(6) -0.0030(6) O4' 0.0423(8) 0.0638(10) 0.0477(8) 0.0056(7) 0.0086(6) -0.0180(7) O3' 0.0589(9) 0.0411(7) 0.0420(7) 0.0050(6) -0.0168(6) 0.0010(6) O1' 0.0435(8) 0.0708(11) 0.0481(8) -0.0099(7) 0.0123(6) -0.0108(7) C2' 0.0359(9) 0.0390(9) 0.0400(9) -0.0023(7) -0.0034(7) -0.0113(7) C3' 0.0386(9) 0.0512(11) 0.0336(8) 0.0046(8) -0.0057(7) -0.0181(8) O5' 0.0707(11) 0.0422(8) 0.0617(10) -0.0006(7) -0.0063(8) -0.0229(7) O5 0.0679(10) 0.0540(9) 0.0332(7) -0.0185(7) 0.0089(6) -0.0133(6) C2 0.0297(8) 0.0423(9) 0.0386(9) -0.0034(7) -0.0009(6) -0.0099(7) O4 0.0453(8) 0.0783(12) 0.0626(10) -0.0119(8) -0.0094(7) -0.0397(9) C4 0.0421(9) 0.0404(9) 0.0343(8) -0.0069(7) 0.0010(7) -0.0092(7) C4' 0.0508(11) 0.0419(10) 0.0514(12) -0.0077(8) -0.0041(9) -0.0141(9) C5 0.087(2) 0.0612(16) 0.0493(13) -0.0149(14) 0.0291(13) -0.0145(11) C5' 0.110(3) 0.0417(13) 0.084(2) 0.0035(14) -0.032(2) -0.0199(13) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O1 S1 O2 118.48(9) yes O1 S1 C3 111.07(8) yes O2 S1 C3 108.80(9) yes O1 S1 C1 110.05(8) yes O2 S1 C1 107.00(8) yes C3 S1 C1 99.74(8) yes O3' S2' O4' 119.33(10) yes O3' S2' C2' 108.49(10) yes O4' S2' C2' 110.67(10) yes O3' S2' C1' 108.19(9) yes O4' S2' C1' 110.18(9) yes C2' S2' C1' 97.80(9) yes O2' S1' O1' 118.19(11) yes O2' S1' C3' 109.45(10) yes O1' S1' C3' 109.89(10) yes O2' S1' C1' 108.25(9) yes O1' S1' C1' 109.67(10) yes C3' S1' C1' 99.81(8) yes O4 S2 O3 118.90(11) yes O4 S2 C2 110.46(10) yes O3 S2 C2 108.94(10) yes O4 S2 C1 109.93(9) yes O3 S2 C1 108.07(9) yes C2 S2 C1 98.60(8) yes C4 C1 S2 115.07(12) ? C4 C1 S1 112.20(12) ? S2 C1 S1 105.83(8) yes C4 C1 H11 110.6(13) ? S2 C1 H11 106.3(13) ? S1 C1 H11 106.2(13) ? C2 C3 S1 105.61(12) yes C2 C3 H32 111.5(13) ? S1 C3 H32 105.6(13) ? C2 C3 H31 113.9(18) ? S1 C3 H31 106.6(18) ? H32 C3 H31 113(2) ? C4' C1' S2' 112.57(14) ? C4' C1' S1' 112.62(13) ? S2' C1' S1' 106.20(9) yes C4' C1' H11' 112.6(16) ? S2' C1' H11' 106.0(15) ? S1' C1' H11' 106.3(16) ? C3' C2' S2' 106.31(13) yes C3' C2' H21' 111.3(17) ? S2' C2' H21' 109.6(17) ? C3' C2' H22' 108.7(16) ? S2' C2' H22' 102.0(16) ? H21' C2' H22' 118(2) ? C2' C3' S1' 107.96(13) yes C2' C3' H31' 114(2) ? S1' C3' H31' 101.5(19) ? C2' C3' H32' 107.8(18) ? S1' C3' H32' 106.2(18) ? H31' C3' H32' 118(3) ? C4' O5' C5' 112.2(2) ? C4 O5 C5 110.92(19) ? C3 C2 S2 106.13(12) yes C3 C2 H21 113.0(15) ? S2 C2 H21 104.9(15) ? C3 C2 H22 113.7(16) ? S2 C2 H22 106.0(17) ? H21 C2 H22 112(2) ? O5 C4 C1 107.72(15) ? O5 C4 H42 107.8(16) ? C1 C4 H42 107.3(15) ? O5 C4 H41 112.6(16) ? C1 C4 H41 111.7(16) ? H42 C4 H41 109(2) ? O5' C4' C1' 106.16(18) ? O5' C4' H41' 115.7(16) ? C1' C4' H41' 112.9(16) ? O5' C4' H42' 112.5(17) ? C1' C4' H42' 109.5(17) ? H41' C4' H42' 100(2) ? O5 C5 H51 105(2) ? O5 C5 H52 116(3) ? H51 C5 H52 101(4) ? O5 C5 H53 114(2) ? H51 C5 H53 111(3) ? H52 C5 H53 109(4) ? O5' C5' H51' 111(2) ? O5' C5' H52' 106(2) ? H51' C5' H52' 105(3) ? O5' C5' H53' 109(2) ? H51' C5' H53' 117(3) ? H52' C5' H53' 108(3) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag S1 O1 1.4342(14) yes S1 O2 1.4363(14) yes S1 C3 1.7671(17) yes S1 C1 1.8199(16) yes S2' O3' 1.4347(14) yes S2' O4' 1.4361(15) yes S2' C2' 1.7714(19) yes S2' C1' 1.8125(18) yes S1' O2' 1.4296(15) yes S1' O1' 1.4320(15) yes S1' C3' 1.7820(19) yes S1' C1' 1.8185(17) yes S2 O4 1.4327(15) yes S2 O3 1.4359(16) yes S2 C2 1.7772(19) yes S2 C1 1.8197(17) yes C1 C4 1.522(2) ? C1 H11 0.94(2) ? C3 C2 1.517(2) yes C3 H32 0.93(2) ? C3 H31 0.88(3) ? C1' C4' 1.518(3) ? C1' H11' 0.89(2) ? C2' C3' 1.506(3) yes C2' H21' 0.89(3) ? C2' H22' 0.93(3) ? C3' H31' 0.90(3) ? C3' H32' 0.94(3) ? O5' C4' 1.407(3) ? O5' C5' 1.420(3) ? O5 C4 1.400(2) ? O5 C5 1.424(3) ? C2 H21 0.97(3) ? C2 H22 0.88(3) ? C4 H42 0.99(3) ? C4 H41 0.98(3) ? C4' H41' 1.09(3) ? C4' H42' 0.89(3) ? C5 H51 0.92(4) ? C5 H52 0.97(5) ? C5 H53 0.95(4) ? C5' H51' 1.02(4) ? C5' H52' 0.98(4) ? C5' H53' 0.97(4) ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag O4 S2 C1 C4 -105.37(15) ? O3 S2 C1 C4 25.86(15) ? C2 S2 C1 C4 139.11(13) ? O4 S2 C1 S1 130.13(10) ? O3 S2 C1 S1 -98.64(10) ? C2 S2 C1 S1 14.61(10) yes O1 S1 C1 C4 1.79(15) ? O2 S1 C1 C4 131.76(14) ? C3 S1 C1 C4 -115.02(13) ? O1 S1 C1 S2 128.06(9) ? O2 S1 C1 S2 -101.98(10) ? C3 S1 C1 S2 11.25(10) yes O1 S1 C3 C2 -154.90(12) ? O2 S1 C3 C2 72.96(14) ? C1 S1 C3 C2 -38.87(13) yes O3' S2' C1' C4' 35.54(16) ? O4' S2' C1' C4' -96.53(15) ? C2' S2' C1' C4' 148.00(14) ? O3' S2' C1' S1' -88.14(11) ? O4' S2' C1' S1' 139.79(10) ? C2' S2' C1' S1' 24.32(11) yes O2' S1' C1' C4' 121.16(15) ? O1' S1' C1' C4' -9.08(17) ? C3' S1' C1' C4' -124.45(15) ? O2' S1' C1' S2' -115.19(10) ? O1' S1' C1' S2' 114.57(11) ? C3' S1' C1' S2' -0.80(11) yes O3' S2' C2' C3' 67.42(16) ? O4' S2' C2' C3' -159.87(13) ? C1' S2' C2' C3' -44.79(15) yes S2' C2' C3' S1' 48.07(17) yes O2' S1' C3' C2' 84.73(16) ? O1' S1' C3' C2' -143.93(15) ? C1' S1' C3' C2' -28.73(16) yes S1 C3 C2 S2 52.20(14) yes O4 S2 C2 C3 -156.35(13) ? O3 S2 C2 C3 71.32(15) ? C1 S2 C2 C3 -41.24(14) yes C5 O5 C4 C1 163.8(2) ? S2 C1 C4 O5 79.95(18) ? S1 C1 C4 O5 -158.96(13) ? C5' O5' C4' C1' -170.9(2) ? S2' C1' C4' O5' 64.30(19) ? S1' C1' C4' O5' -175.66(14) ?