#------------------------------------------------------------------------------ #$Date: 2012-02-03 17:16:24 +0000 (Fri, 03 Feb 2012) $ #$Revision: 32112 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/23/2202301.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2202301 loop_ _publ_author_name 'Haddad, Salim F.' 'Al-Far, Rawhi H.' _publ_section_title ; 2,6-Diaminopyridinium bromide monohydrate ; _journal_issue 10 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o1444 _journal_page_last o1446 _journal_volume 59 _journal_year 2003 _chemical_formula_moiety 'C5 H8 N3 1+ , Br 1- , H2 O' _chemical_formula_sum 'C5 H10 Br N3 O' _chemical_formula_weight 208.07 _chemical_name_common '[2,6-DAPyH]Br.H2O' _chemical_name_systematic ; '2,6-Diaminopyridinium Bromide Hydrate' ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method 'SHELXTL v. 5.10' _cell_angle_alpha 91.557(11) _cell_angle_beta 102.518(17) _cell_angle_gamma 112.627(11) _cell_formula_units_Z 2 _cell_length_a 7.1225(12) _cell_length_b 7.2333(8) _cell_length_c 8.7082(13) _cell_measurement_reflns_used 28 _cell_measurement_temperature 295(2) _cell_measurement_theta_max 18.10 _cell_measurement_theta_min 5.91 _cell_volume 401.21(11) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Bruker, 1996b)' _computing_data_reduction XSCANS _computing_molecular_graphics 'XP in SHELXTL' _computing_publication_material 'XCIF in SHELXTL' _computing_structure_refinement 'XL in SHELXTL' _computing_structure_solution 'XS in SHELXTL (Bruker, 1996)' _diffrn_ambient_temperature 295(2) _diffrn_measured_fraction_theta_full 0.991 _diffrn_measured_fraction_theta_max 0.991 _diffrn_measurement_device_type 'Siemens P2~1~ upgraded to P4' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0305 _diffrn_reflns_av_sigmaI/netI 0.0327 _diffrn_reflns_limit_h_max 1 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min -8 _diffrn_reflns_limit_l_max 10 _diffrn_reflns_limit_l_min -10 _diffrn_reflns_number 1781 _diffrn_reflns_theta_full 24.97 _diffrn_reflns_theta_max 24.97 _diffrn_reflns_theta_min 2.41 _diffrn_standards_decay_% <0.01 _diffrn_standards_interval_count 97 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 5.062 _exptl_absorpt_correction_T_max 0.2423 _exptl_absorpt_correction_T_min 0.1460 _exptl_absorpt_correction_type psi-scan _exptl_absorpt_process_details '(XPREP in SHELXTL; Bruker, 1996)' _exptl_crystal_colour Pink _exptl_crystal_density_diffrn 1.722 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Parallelpiped _exptl_crystal_F_000 208 _exptl_crystal_size_max 0.40 _exptl_crystal_size_mid 0.35 _exptl_crystal_size_min 0.28 _refine_diff_density_max 0.437 _refine_diff_density_min -0.626 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.089 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 99 _refine_ls_number_reflns 1412 _refine_ls_number_restraints 3 _refine_ls_restrained_S_all 1.088 _refine_ls_R_factor_all 0.0415 _refine_ls_R_factor_gt 0.0376 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0593P)^2^+0.2936P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0963 _refine_ls_wR_factor_ref 0.0996 _reflns_number_gt 1292 _reflns_number_total 1412 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file br6115.cif _[local]_cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_exptl_absorpt_correction_type' value 'Psi-scan' changed to 'psi-scan' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 401.21(10) _cod_database_code 2202301 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol C5 0.6409(6) 0.7561(6) -0.0186(5) 0.0486(9) Uani d . 1 . . C H5A 0.7567 0.7581 -0.0526 0.058 Uiso calc R 1 . . H Br 0.88031(6) 0.66391(6) 0.63033(4) 0.0519(2) Uani d . 1 . . Br N2 0.1227(4) 0.7448(5) 0.1128(4) 0.0430(7) Uani d . 1 . . N H2A 0.0117 0.7102 0.0366 0.052 Uiso calc R 1 . . H H2B 0.1184 0.7742 0.2079 0.052 Uiso calc R 1 . . H N1 0.2839(5) 0.7032(5) -0.0697(4) 0.0431(7) Uani d . 1 . . N H1A 0.1642 0.6709 -0.1358 0.052 Uiso calc R 1 . . H C2 0.2996(6) 0.7528(6) 0.0837(5) 0.0455(9) Uani d . 1 . . C N6 0.4118(6) 0.6507(6) -0.2809(4) 0.0597(9) Uani d . 1 . . N H6A 0.2892 0.6204 -0.3423 0.072 Uiso calc R 1 . . H H6B 0.5123 0.6484 -0.3196 0.072 Uiso calc R 1 . . H C3 0.4874(6) 0.8053(6) 0.1924(5) 0.0501(9) Uani d . 1 . . C H3A 0.5009 0.8389 0.2993 0.060 Uiso calc R 1 . . H C6 0.4459(6) 0.7013(6) -0.1262(5) 0.0443(8) Uani d . 1 . . C C4 0.6576(6) 0.8066(6) 0.1377(5) 0.0531(10) Uani d . 1 . . C H4A 0.7868 0.8430 0.2097 0.064 Uiso calc R 1 . . H O 0.1830(6) 0.9045(6) 0.3976(4) 0.0673(8) Uani d D 1 . . O H1 0.177(8) 1.024(4) 0.404(6) 0.075(17) Uiso d D 1 . . H H2 0.130(9) 0.834(7) 0.470(6) 0.088(19) Uiso d D 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C5 0.039(2) 0.049(2) 0.061(3) 0.0188(17) 0.0152(17) 0.0046(18) Br 0.0481(3) 0.0676(3) 0.0451(3) 0.0279(2) 0.01310(18) 0.00455(18) N2 0.0290(15) 0.0647(19) 0.0409(17) 0.0226(14) 0.0123(12) 0.0068(14) N1 0.0327(15) 0.0492(17) 0.0483(18) 0.0184(13) 0.0080(13) 0.0059(14) C2 0.043(2) 0.0476(19) 0.051(2) 0.0209(17) 0.0173(17) 0.0097(17) N6 0.055(2) 0.084(3) 0.047(2) 0.036(2) 0.0118(16) 0.0010(18) C3 0.048(2) 0.058(2) 0.045(2) 0.0234(19) 0.0086(17) 0.0026(17) C6 0.044(2) 0.0431(18) 0.051(2) 0.0212(16) 0.0156(17) 0.0088(16) C4 0.039(2) 0.056(2) 0.059(3) 0.0187(18) 0.0032(18) 0.0000(19) O 0.078(2) 0.077(2) 0.064(2) 0.0399(19) 0.0344(17) 0.0142(17) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag C5 C4 . 1.367(6) ? C5 C6 . 1.399(6) ? C5 H5A . 0.9300 ? N2 C2 . 1.319(5) ? N2 H2A . 0.8600 ? N2 H2B . 0.8600 ? N1 C2 . 1.343(5) ? N1 C6 . 1.353(5) ? N1 H1A . 0.8600 ? C2 C3 . 1.368(6) ? N6 C6 . 1.331(5) ? N6 H6A . 0.8600 ? N6 H6B . 0.8600 ? C3 C4 . 1.392(6) ? C3 H3A . 0.9300 ? C4 H4A . 0.9300 ? O H1 . 0.882(19) ? O H2 . 0.881(19) ? loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Br Br -0.2901 2.4595 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C4 C5 C6 118.6(4) C4 C5 H5A 120.7 C6 C5 H5A 120.7 C2 N2 H2A 120.0 C2 N2 H2B 120.0 H2A N2 H2B 120.0 C2 N1 C6 123.7(3) C2 N1 H1A 118.2 C6 N1 H1A 118.2 N2 C2 N1 113.7(3) N2 C2 C3 126.4(4) N1 C2 C3 120.0(4) C6 N6 H6A 120.0 C6 N6 H6B 120.0 H6A N6 H6B 120.0 C2 C3 C4 117.7(4) C2 C3 H3A 121.2 C4 C3 H3A 121.2 N6 C6 N1 118.3(4) N6 C6 C5 123.7(4) N1 C6 C5 117.9(4) C5 C4 C3 122.2(4) C5 C4 H4A 118.9 C3 C4 H4A 118.9 H1 O H2 110(3) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N2 H2B O . 0.86 1.76 2.583(5) 160.9 N1 H1A Br 1_454 0.86 2.52 3.353(3) 162.2 N6 H6A Br 2_665 0.86 2.91 3.464(4) 123.8 N6 H6A Br 1_454 0.86 3.01 3.735(4) 143.6 N6 H6B Br 1_554 0.86 2.71 3.553(4) 166.6 O H1 Br 2_676 0.882(19) 2.46(2) 3.329(4) 169(5) O H2 Br 1_455 0.881(19) 2.47(3) 3.314(4) 161(5) N2 H2B Br 2_666 0.86 3.51 3.752(3) 100.0 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C6 N1 C2 N2 180.0(3) C6 N1 C2 C3 0.1(6) N2 C2 C3 C4 -179.3(4) N1 C2 C3 C4 0.6(6) C2 N1 C6 N6 -179.6(4) C2 N1 C6 C5 -0.7(6) C4 C5 C6 N6 179.5(4) C4 C5 C6 N1 0.7(6) C6 C5 C4 C3 -0.1(6) C2 C3 C4 C5 -0.6(6)