#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2202513.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2202513 loop_ _publ_author_name 'Jin, Zhi Min' 'Shen, Liang' 'He, Lin' 'Guo, Hong' 'Wang, Hua Tong' _publ_section_title ; Pyridine-2-carbaldehyde thiosemicarbazone 1.75-hydrate ; _journal_issue 12 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o1909 _journal_page_last o1911 _journal_volume 59 _journal_year 2003 _chemical_formula_iupac 'C7 H8 N4 S1, 1.75H2 O' _chemical_formula_moiety 'C7 H8 N4 S1, 1.75H2 O' _chemical_formula_sum 'C7 H11.5 N4 O1.75 S' _chemical_formula_weight 211.76 _chemical_name_systematic ; Pyridine-2-carbaldehyde thiosemicarbazone 1.75-hydrate ; _space_group_IT_number 88 _symmetry_cell_setting tetragonal _symmetry_space_group_name_Hall '-I 4ad' _symmetry_space_group_name_H-M 'I 41/a :2' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 16 _cell_length_a 13.6760(10) _cell_length_b 13.6760(10) _cell_length_c 22.192(3) _cell_measurement_reflns_used 39 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 14.94 _cell_measurement_theta_min 2.78 _cell_volume 4150.6(7) _computing_cell_refinement XSCANS _computing_data_collection 'XSCANS (Siemens, 1994)' _computing_data_reduction XSCANS _computing_molecular_graphics 'SHELXTL (Siemens, 1994)' _computing_publication_material SHELXTL _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 296(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Siemens P4' _diffrn_measurement_method \q/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0195 _diffrn_reflns_av_sigmaI/netI 0.0401 _diffrn_reflns_limit_h_max 17 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 17 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 27 _diffrn_reflns_limit_l_min -1 _diffrn_reflns_number 2473 _diffrn_reflns_theta_full 26.49 _diffrn_reflns_theta_max 26.49 _diffrn_reflns_theta_min 1.75 _diffrn_standards_decay_% 2.76 _diffrn_standards_interval_count 97 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.291 _exptl_absorpt_correction_T_max 0.880 _exptl_absorpt_correction_T_min 0.831 _exptl_absorpt_correction_type psi-scan _exptl_absorpt_process_details '(North et al., 1968)' _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.356 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 1784 _exptl_crystal_size_max 0.48 _exptl_crystal_size_mid 0.48 _exptl_crystal_size_min 0.44 _refine_diff_density_max 0.134 _refine_diff_density_min -0.183 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.930 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 144 _refine_ls_number_reflns 2158 _refine_ls_number_restraints 10 _refine_ls_restrained_S_all 0.930 _refine_ls_R_factor_all 0.0655 _refine_ls_R_factor_gt 0.0397 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0502P)^2^] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0878 _refine_ls_wR_factor_ref 0.0951 _reflns_number_gt 1437 _reflns_number_total 2158 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file ci6283.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'I 41/a' _[local]_cod_chemical_formula_sum_orig 'C7 H11.50 N4 O1.75 S' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Tetragonal' changed to 'tetragonal' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2202513 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-y+3/4, x+1/4, z+1/4' 'y+3/4, -x+3/4, z+3/4' 'x+1/2, y+1/2, z+1/2' '-x+1, -y+1/2, z+1' '-y+5/4, x+3/4, z+3/4' 'y+5/4, -x+5/4, z+5/4' '-x, -y, -z' 'x-1/2, y, -z-1/2' 'y-3/4, -x-1/4, -z-1/4' '-y-3/4, x-3/4, -z-3/4' '-x+1/2, -y+1/2, -z+1/2' 'x, y+1/2, -z' 'y-1/4, -x+1/4, -z+1/4' '-y-1/4, x-1/4, -z-1/4' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol S 0.35971(4) 0.42035(4) 0.10319(2) 0.05532(19) Uani d . 1 S N1 -0.15439(11) 0.36195(11) 0.04923(7) 0.0472(4) Uani d . 1 N N2 0.10107(11) 0.39167(10) 0.03125(7) 0.0418(4) Uani d . 1 N N3 0.17588(11) 0.40563(11) 0.07153(7) 0.0437(4) Uani d . 1 N H3N 0.1635 0.4094 0.1095 0.052 Uiso calc R 1 H N4 0.28360(11) 0.41412(11) -0.00676(7) 0.0498(4) Uani d . 1 N H4A 0.2348 0.4097 -0.0310 0.060 Uiso calc R 1 H H4B 0.3420 0.4190 -0.0208 0.060 Uiso calc R 1 H C1 -0.23631(15) 0.34362(15) 0.01825(9) 0.0560(5) Uani d . 1 C H1 -0.2946 0.3376 0.0396 0.067 Uiso calc R 1 H C2 -0.23917(16) 0.33317(15) -0.04301(10) 0.0594(6) Uani d . 1 C H2 -0.2978 0.3202 -0.0627 0.071 Uiso calc R 1 H C3 -0.15371(16) 0.34223(14) -0.07480(10) 0.0570(6) Uani d . 1 C H3 -0.1538 0.3363 -0.1165 0.068 Uiso calc R 1 H C4 -0.06778(15) 0.36019(13) -0.04457(8) 0.0476(5) Uani d . 1 C H4 -0.0090 0.3659 -0.0654 0.057 Uiso calc R 1 H C5 -0.07077(13) 0.36951(12) 0.01752(8) 0.0406(4) Uani d . 1 C C6 0.01594(14) 0.38719(13) 0.05404(8) 0.0448(5) Uani d . 1 C H6 0.0088 0.3955 0.0954 0.054 Uiso calc R 1 H C7 0.26893(13) 0.41344(13) 0.05173(8) 0.0410(4) Uani d . 1 C O1 0.51492(15) 0.58711(17) 0.05087(10) 0.0968(6) Uani d D 1 O O2 0.4778(5) 0.2231(5) 0.04034(19) 0.1060(18) Uani d PD 0.50 O O3 0.5000 0.7500 0.1250 0.0993(12) Uani d SD 1 O H1O1 0.505(2) 0.6278(18) 0.0759(13) 0.149 Uiso d D 1 H H2O1 0.478(2) 0.5406(16) 0.0536(15) 0.149 Uiso d D 1 H H1O2 0.489(5) 0.190(4) 0.0100(15) 0.149 Uiso d PD 0.50 H H2O2 0.525(4) 0.212(6) 0.063(2) 0.149 Uiso d PD 0.50 H H1O3 0.481(6) 0.795(3) 0.1038(5) 0.149 Uiso d PD 0.50 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S 0.0492(3) 0.0736(4) 0.0432(3) -0.0001(3) -0.0060(2) 0.0002(3) N1 0.0435(9) 0.0515(10) 0.0468(9) -0.0004(8) 0.0011(8) -0.0015(8) N2 0.0441(9) 0.0402(9) 0.0410(9) -0.0002(7) -0.0028(7) 0.0007(7) N3 0.0450(9) 0.0507(10) 0.0355(8) -0.0008(7) 0.0000(7) 0.0006(7) N4 0.0438(10) 0.0650(11) 0.0405(9) -0.0029(8) 0.0000(7) -0.0011(8) C1 0.0442(12) 0.0598(14) 0.0638(14) -0.0011(10) 0.0013(10) -0.0049(11) C2 0.0541(13) 0.0563(14) 0.0678(15) -0.0016(11) -0.0155(12) -0.0077(11) C3 0.0752(16) 0.0503(13) 0.0454(12) 0.0001(11) -0.0109(11) -0.0051(10) C4 0.0540(12) 0.0440(11) 0.0447(11) 0.0018(9) 0.0032(9) -0.0019(9) C5 0.0442(11) 0.0339(10) 0.0436(10) 0.0008(8) -0.0005(8) 0.0012(8) C6 0.0491(12) 0.0465(11) 0.0390(10) -0.0004(9) 0.0003(9) 0.0006(8) C7 0.0474(11) 0.0353(10) 0.0403(10) 0.0019(8) 0.0016(9) 0.0013(8) O1 0.0775(13) 0.1067(17) 0.1063(16) -0.0238(12) 0.0294(11) -0.0172(12) O2 0.100(5) 0.113(6) 0.105(3) 0.025(3) -0.017(3) -0.028(3) O3 0.1042(18) 0.1042(18) 0.089(3) 0.000 0.000 0.000 loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle _geom_angle_publ_flag C1 N1 C5 . 117.18(17) yes C6 N2 N3 . 115.51(15) yes C7 N3 N2 . 120.11(15) yes C7 N3 H3N . 119.9 ? N2 N3 H3N . 119.9 ? C7 N4 H4A . 120.0 ? C7 N4 H4B . 120.0 ? H4A N4 H4B . 120.0 ? N1 C1 C2 . 123.7(2) yes N1 C1 H1 . 118.2 ? C2 C1 H1 . 118.2 ? C1 C2 C3 . 118.5(2) yes C1 C2 H2 . 120.7 ? C3 C2 H2 . 120.7 ? C2 C3 C4 . 119.59(19) yes C2 C3 H3 . 120.2 ? C4 C3 H3 . 120.2 ? C3 C4 C5 . 118.47(19) yes C3 C4 H4 . 120.8 ? C5 C4 H4 . 120.8 ? N1 C5 C4 . 122.56(18) yes N1 C5 C6 . 114.42(16) yes C4 C5 C6 . 123.02(18) yes N2 C6 C5 . 122.18(17) yes N2 C6 H6 . 118.9 ? C5 C6 H6 . 118.9 ? N4 C7 N3 . 117.77(16) yes N4 C7 S . 123.74(15) yes N3 C7 S . 118.48(14) yes H1O1 O1 H2O1 . 113(2) ? O2 O2 H1O2 6_554 108(5) ? O2 O2 H2O2 6_554 70(6) ? H1O2 O2 H2O2 . 104(2) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag S C7 . 1.6895(18) yes N1 C1 . 1.338(2) yes N1 C5 . 1.347(2) yes N2 C6 . 1.271(2) yes N2 N3 . 1.372(2) yes N3 C7 . 1.351(2) yes N3 H3N . 0.86 ? N4 C7 . 1.314(2) yes N4 H4A . 0.86 ? N4 H4B . 0.86 ? C1 C2 . 1.368(3) yes C1 H1 . 0.93 ? C2 C3 . 1.371(3) yes C2 H2 . 0.93 ? C3 C4 . 1.375(3) yes C3 H3 . 0.93 ? C4 C5 . 1.384(3) yes C4 H4 . 0.93 ? C5 C6 . 1.457(3) yes C6 H6 . 0.93 ? O1 H1O1 . 0.80(3) ? O1 H2O1 . 0.81(2) ? O2 O2 6_554 0.953(10) ? O2 H1O2 . 0.83(4) ? O2 H2O2 . 0.83(5) ? O3 H1O3 . 0.82(4) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N4 H4A N2 . 0.86 2.31 2.653(2) 104 yes O1 H1O1 O3 . 0.80(3) 2.00(3) 2.777(2) 166(3) yes O1 H2O1 S . 0.81(2) 2.56(3) 3.325(2) 158(3) yes N3 H3N N1 15 0.86 2.15 2.998(2) 171 yes O3 H1O3 O1 6_564 0.82(4) 2.00(3) 2.777(2) 160(9) yes N4 H4A S 4_454 0.86 2.73 3.488(2) 148 yes N4 H4B O1 9_665 0.86 2.07 2.924(2) 173 yes O2 H1O2 O1 14_545 0.83(4) 1.98(5) 2.796(6) 168(6) yes O2 H2O2 S 6_554 0.83(5) 2.56(7) 3.277(7) 145(7) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C6 N2 N3 C7 -178.63(16) C5 N1 C1 C2 -0.5(3) N1 C1 C2 C3 -0.2(3) C1 C2 C3 C4 0.8(3) C2 C3 C4 C5 -0.6(3) C1 N1 C5 C4 0.8(3) C1 N1 C5 C6 -178.61(17) C3 C4 C5 N1 -0.2(3) C3 C4 C5 C6 179.12(17) N3 N2 C6 C5 -178.00(15) N1 C5 C6 N2 176.72(16) C4 C5 C6 N2 -2.6(3) N2 N3 C7 N4 4.7(2) N2 N3 C7 S -174.56(12)