#------------------------------------------------------------------------------ #$Date: 2025-08-19 11:43:10 +0100 (Tue, 19 Aug 2025) $ #$Revision: 301803 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/25/2202540.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2202540 loop_ _publ_author_name 'Chen, Can-Yu' 'Wei, Zan-Bin' 'Zhou, Zhao-Hui' 'Ng, Seik Weng' _publ_section_title ; Morpholinium dihydrogen citrate hydrate ; _journal_issue 7 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o1030 _journal_page_last o1032 _journal_paper_doi 10.1107/S1600536803013874 _journal_volume 59 _journal_year 2003 _chemical_formula_moiety 'C4 H10 N O , C6 H7 O7, H2 O' _chemical_formula_sum 'C10 H19 N O9' _chemical_formula_weight 297.26 _chemical_name_systematic ; Morpholinium dihydrogen citrate dihydrate ; _space_group_IT_number 61 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall '-P 2ac 2ab' _symmetry_space_group_name_H-M 'P b c a' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 11.3774(6) _cell_length_b 12.4823(7) _cell_length_c 18.4370(10) _cell_measurement_reflns_used 4726 _cell_measurement_temperature 298(2) _cell_measurement_theta_max 27.3 _cell_measurement_theta_min 2.4 _cell_volume 2618.4(2) _computing_cell_refinement SAINT _computing_data_collection 'SMART (Bruker, 2001)' _computing_data_reduction 'SAINT (Bruker, 2001)' _computing_molecular_graphics 'ORTEPII (Johnson, 1976)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 298(2) _diffrn_measured_fraction_theta_full 1.00 _diffrn_measured_fraction_theta_max 1.00 _diffrn_measurement_device_type 'Bruker AXS area-detector diffractometer' _diffrn_measurement_method '\f and \w scan' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.028 _diffrn_reflns_av_sigmaI/netI 0.018 _diffrn_reflns_limit_h_max 13 _diffrn_reflns_limit_h_min -13 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min -14 _diffrn_reflns_limit_l_max 21 _diffrn_reflns_limit_l_min -20 _diffrn_reflns_number 12407 _diffrn_reflns_theta_full 25.0 _diffrn_reflns_theta_max 25.0 _diffrn_reflns_theta_min 2.2 _diffrn_standards_decay_% 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.134 _exptl_absorpt_correction_type none _exptl_crystal_colour Colorless _exptl_crystal_density_diffrn 1.508 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Block _exptl_crystal_F_000 1264 _exptl_crystal_size_max 0.28 _exptl_crystal_size_mid 0.18 _exptl_crystal_size_min 0.18 _refine_diff_density_max 0.29 _refine_diff_density_min -0.19 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.15 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 209 _refine_ls_number_reflns 2305 _refine_ls_number_restraints 7 _refine_ls_restrained_S_all 1.14 _refine_ls_R_factor_all 0.061 _refine_ls_R_factor_gt 0.055 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean <0.001 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0711P)^2^+1.4573P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.139 _refine_ls_wR_factor_ref 0.143 _reflns_number_gt 2103 _reflns_number_total 2305 _reflns_threshold_expression I>2\s(I) _cod_data_source_file cm6050.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_exptl_absorpt_correction_type' value 'None' changed to 'none' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 2618.3(2) _cod_database_code 2202540 _cod_database_fobs_code 2202540 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' '-x, -y, -z' 'x-1/2, y, -z-1/2' 'x, -y-1/2, z-1/2' '-x-1/2, y-1/2, z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol O1 0.7018(2) 0.4461(2) 0.32430(10) 0.0458(5) Uani d . 1 . . O O2 0.8506(2) 0.5350(2) 0.27680(10) 0.0370(4) Uani d . 1 . . O O3 0.7367(2) 0.5590(2) 0.66230(10) 0.0451(5) Uani d D 1 . . O O4 0.6867(2) 0.4115(2) 0.60370(10) 0.0516(6) Uani d . 1 . . O O5 0.9106(2) 0.36940(10) 0.48910(10) 0.0424(5) Uani d D 1 . . O O6 0.7354(2) 0.30100(10) 0.46100(10) 0.0379(5) Uani d . 1 . . O O7 0.63570(10) 0.49840(10) 0.45610(10) 0.0290(4) Uani d D 1 . . O O8 0.3538(2) 0.2267(2) 0.24040(10) 0.0481(5) Uani d . 1 . . O O1w 0.9859(2) 0.1797(2) 0.50150(10) 0.0497(6) Uani d D 1 . . O N1 0.5971(2) 0.2640(2) 0.25740(10) 0.0371(5) Uani d D 1 . . N C1 0.7892(2) 0.5054(2) 0.32950(10) 0.0266(5) Uani d . 1 . . C C2 0.8230(2) 0.5481(2) 0.40410(10) 0.0273(5) Uani d . 1 . . C C3 0.7591(2) 0.4941(2) 0.46780(10) 0.0244(5) Uani d . 1 . . C C4 0.7850(2) 0.5521(2) 0.53880(10) 0.0269(5) Uani d . 1 . . C C5 0.7300(2) 0.4999(2) 0.60410(10) 0.0280(5) Uani d . 1 . . C C6 0.7983(2) 0.3765(2) 0.47270(10) 0.0258(5) Uani d . 1 . . C C7 0.5131(2) 0.2781(2) 0.31810(10) 0.0420(6) Uani d . 1 . . C C8 0.4100(2) 0.2064(2) 0.3076(2) 0.0479(7) Uani d . 1 . . C C9 0.4334(2) 0.2074(2) 0.1824(2) 0.0464(7) Uani d . 1 . . C C10 0.5379(2) 0.2798(2) 0.18650(10) 0.0409(6) Uani d . 1 . . C H3o 0.708(3) 0.526(3) 0.699(2) 0.090(10) Uiso d D 1 . . H H5o 0.930(3) 0.3030(10) 0.491(2) 0.060(10) Uiso d D 1 . . H H7o 0.626(3) 0.476(3) 0.4130(10) 0.060(10) Uiso d D 1 . . H H1w1 1.0590(10) 0.168(3) 0.502(2) 0.060(10) Uiso d D 1 . . H H1w2 0.950(3) 0.125(2) 0.485(2) 0.080(10) Uiso d D 1 . . H H1n1 0.628(3) 0.2020(10) 0.260(2) 0.060(10) Uiso d D 1 . . H H1n2 0.653(2) 0.307(2) 0.265(2) 0.060(10) Uiso d D 1 . . H H2a 0.8068 0.6243 0.4056 0.033 Uiso calc R 1 . . H H2b 0.9070 0.5388 0.4107 0.033 Uiso calc R 1 . . H H4a 0.8694 0.5551 0.5457 0.032 Uiso calc R 1 . . H H4b 0.7564 0.6251 0.5352 0.032 Uiso calc R 1 . . H H7a 0.4871 0.3521 0.3200 0.050 Uiso calc R 1 . . H H7b 0.5515 0.2613 0.3637 0.050 Uiso calc R 1 . . H H8a 0.4357 0.1323 0.3092 0.058 Uiso calc R 1 . . H H8b 0.3544 0.2173 0.3468 0.058 Uiso calc R 1 . . H H9a 0.3933 0.2185 0.1366 0.056 Uiso calc R 1 . . H H9b 0.4593 0.1334 0.1841 0.056 Uiso calc R 1 . . H H10a 0.5920 0.2636 0.1474 0.049 Uiso calc R 1 . . H H10b 0.5132 0.3538 0.1817 0.049 Uiso calc R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0530(10) 0.0560(10) 0.0280(10) -0.0270(10) 0.0020(10) -0.0090(10) O2 0.0450(10) 0.0440(10) 0.0220(10) -0.0100(10) 0.0040(10) -0.0010(10) O3 0.0710(10) 0.0430(10) 0.0210(10) -0.0160(10) 0.0060(10) -0.0020(10) O4 0.082(2) 0.0420(10) 0.0310(10) -0.0230(10) 0.0070(10) 0.0010(10) O5 0.0330(10) 0.0270(10) 0.0670(10) 0.0030(10) -0.0090(10) 0.001(9) O6 0.0390(10) 0.0230(10) 0.0510(10) -0.0030(10) -0.0040(10) -0.0010(10) O7 0.0270(10) 0.0320(10) 0.0290(10) 0.0020(10) -0.0010(10) 0.0000(10) O8 0.0260(10) 0.0600(10) 0.0590(10) -0.0020(10) -0.0050(10) 0.0020(10) O1w 0.0350(10) 0.0350(10) 0.079(2) 0.0090(10) -0.0140(10) -0.0060(10) N1 0.0250(10) 0.0340(10) 0.0530(10) -0.0010(10) -0.0050(10) -0.0030(10) C1 0.0330(10) 0.0230(10) 0.0240(10) 0.0000(10) -0.0010(10) -0.0010(10) C2 0.0300(10) 0.0250(10) 0.0260(10) -0.0030(10) 0.0010(10) -0.0010(10) C3 0.0270(10) 0.0240(10) 0.0220(10) -0.0030(10) 0.0000(10) -0.0010(10) C4 0.0320(10) 0.0250(10) 0.0240(10) -0.0010(10) 0.0010(10) -0.0010(10) C5 0.0280(10) 0.0310(10) 0.0250(10) -0.0010(10) -0.0010(10) 0.0020(10) C6 0.0290(10) 0.0270(10) 0.0220(10) -0.0030(10) 0.0020(10) -0.0010(10) C7 0.039(2) 0.050(2) 0.037(2) 0.0040(10) -0.0040(10) -0.0030(10) C8 0.038(2) 0.054(2) 0.052(2) -0.0020(10) 0.0060(10) 0.0080(10) C9 0.042(2) 0.054(2) 0.044(2) -0.0040(10) -0.0100(10) -0.0050(10) C10 0.040(2) 0.044(2) 0.0390(10) 0.0010(10) 0.0020(10) 0.0030(10) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C8 O8 C9 109.9(2) yes O1 C1 O2 124.2(2) yes O1 C1 C2 118.7(2) yes O2 C1 C2 117.2(2) yes C1 C2 C3 114.6(2) yes O7 C3 C2 109.6(2) yes O7 C3 C4 107.7(2) yes C2 C3 C4 110.9(2) yes O7 C3 C6 109.4(2) yes C2 C3 C6 109.0(2) yes C4 C3 C6 110.3(2) yes C3 C4 C5 113.6(2) yes O3 C5 O4 123.1(2) yes O3 C5 C4 112.8(2) yes O4 C5 C4 124.1(2) yes O5 C6 O6 124.4(2) yes O5 C6 C3 111.1(2) yes O6 C6 C3 124.4(2) yes N1 C7 C8 109.8(2) yes O8 C8 C7 111.1(2) yes O8 C9 C10 111.4(2) yes N1 C10 C9 109.0(2) yes C5 O3 H3o 110(3) no C6 O5 H5o 109(2) no C3 O7 H7o 105(2) no H1w1 O1w H1w2 109(4) no C7 N1 H1n1 109(2) no C10 N1 H1n1 111(2) no C7 N1 H1n2 107(2) no C10 N1 H1n2 113(2) no H1n1 N1 H1n2 106(3) no C1 C2 H2a 108.6 no C3 C2 H2a 108.6 no C1 C2 H2b 108.6 no C3 C2 H2b 108.6 no H2a C2 H2b 107.6 no C5 C4 H4a 108.8 no C3 C4 H4a 108.8 no C5 C4 H4b 108.8 no C3 C4 H4b 108.8 no H4a C4 H4b 107.7 no N1 C7 H7a 109.7 no C8 C7 H7a 109.7 no N1 C7 H7b 109.7 no C8 C7 H7b 109.7 no H7a C7 H7b 108.2 no O8 C8 H8a 109.4 no C7 C8 H8a 109.4 no O8 C8 H8b 109.4 no C7 C8 H8b 109.4 no H8a C8 H8b 108.0 no O8 C9 H9a 109.3 no C10 C9 H9a 109.3 no O8 C9 H9b 109.3 no C10 C9 H9b 109.3 no H9a C9 H9b 108.0 no N1 C10 H10a 109.9 no C9 C10 H10a 109.9 no N1 C10 H10b 109.9 no C9 C10 H10b 109.9 no H10a C10 H10b 108.3 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag O1 C1 . 1.243(3) yes O2 C1 . 1.253(3) yes O3 C5 . 1.304(3) yes O4 C5 . 1.207(3) yes O5 C6 . 1.316(3) yes O6 C6 . 1.203(3) yes O7 C3 . 1.421(3) yes O8 C8 . 1.418(3) yes O8 C9 . 1.421(3) yes N1 C7 . 1.482(3) yes N1 C10 . 1.484(3) yes C1 C2 . 1.524(3) yes C2 C3 . 1.536(3) yes C3 C4 . 1.525(3) yes C3 C6 . 1.536(3) yes C4 C5 . 1.505(3) yes C7 C8 . 1.489(4) yes C9 C10 . 1.496(4) yes O3 H3o . 0.850(10) no O5 H5o . 0.860(10) no O7 H7o . 0.850(10) no O1w H1w1 . 0.850(10) no O1w H1w2 . 0.850(10) no N1 H1n1 . 0.850(10) no N1 H1n2 . 0.850(10) no C2 H2a . 0.97 no C2 H2b . 0.97 no C4 H4a . 0.97 no C4 H4b . 0.97 no C7 H7a . 0.97 no C7 H7b . 0.97 no C8 H8a . 0.97 no C8 H8b . 0.97 no C9 H9a . 0.97 no C9 H9b . 0.97 no C10 H10a . 0.97 no C10 H10b . 0.97 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O3 H3o O2 2_665 0.850(10) 1.760(10) 2.612(2) 176(4) yes O5 H5o O1w . 0.860(10) 1.680(10) 2.529(3) 172(4) yes O7 H7o O1 . 0.850(10) 1.89(2) 2.625(2) 144(3) yes N1 H1n2 O1 . 0.850(10) 2.13(2) 2.847(3) 143(3) yes N1 H1n1 O2 8_755 0.850(10) 2.12(2) 2.942(3) 162(3) yes O1w H1w1 O6 4_556 0.850(10) 2.16(2) 2.932(3) 152(3) yes O1w H1w2 O7 8_755 0.850(10) 1.930(10) 2.782(3) 175(4) yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag O1 C1 C2 C3 11.9(3) no O2 C1 C2 C3 -169.8(2) no C1 C2 C3 O7 -53.2(2) no C1 C2 C3 C4 -171.9(2) no C1 C2 C3 C6 66.5(2) no O7 C3 C4 C5 63.2(2) no C2 C3 C4 C5 -177.0(2) no C6 C3 C4 C5 -56.1(3) no C3 C4 C5 O4 12.2(3) no C3 C4 C5 O3 -169.6(2) no O7 C3 C6 O6 6.8(3) no C4 C3 C6 O6 125.1(2) no C2 C3 C6 O6 -113.0(2) no O7 C3 C6 O5 -175.1(2) no C4 C3 C6 O5 -56.9(2) no C2 C3 C6 O5 65.1(2) no C10 N1 C7 C8 54.3(3) no C9 O8 C8 C7 61.1(3) no N1 C7 C8 O8 -57.6(3) no C8 O8 C9 C10 -61.4(3) no C7 N1 C10 C9 -54.1(3) no O8 C9 C10 N1 57.7(3) no loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 ChemSpider 21131666 2 PubChem 139066083