#------------------------------------------------------------------------------ #$Date: 2011-09-10 04:16:28 +0100 (Sat, 10 Sep 2011) $ #$Revision: 25271 $ #$URL: svn://www.crystallography.net/cod/cif/2/2203323.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2203323 loop_ _publ_author_name 'Lynch, Daniel E.' 'McClenaghan, Ian' _publ_section_title ; 4-Hydroxy-6-methyl-2-(sulfonatoethylsulfanyl)pyrimidin-1-ium monohydrate ; _journal_issue 3 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o376 _journal_page_last o377 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C7 H10 N2 O4 S2, H2 O' _chemical_formula_moiety 'C7 H10 N2 O4 S2, H2 O' _chemical_formula_sum 'C7 H12 N2 O5 S2' _chemical_formula_weight 268.31 _chemical_name_systematic ; 4-Hydroxy-6-methyl-2-(sulfonatoethylsulfanyl)pyrimidin-1-ium monohydrate ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 91.0483(18) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 6.1137(2) _cell_length_b 11.2202(3) _cell_length_c 15.9632(6) _cell_measurement_reflns_used 7654 _cell_measurement_temperature 120(2) _cell_measurement_theta_max 27.48 _cell_measurement_theta_min 2.91 _cell_volume 1094.84(6) _computing_cell_refinement 'DENZO and COLLECT' _computing_data_collection 'DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998)' _computing_data_reduction 'DENZO, SCALEPACK (Otwinowski & Minor, 1997) and COLLECT' _computing_molecular_graphics 'PLATON97 (Spek, 1997)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 120(2) _diffrn_detector_area_resol_mean 9.091 _diffrn_measured_fraction_theta_full 0.942 _diffrn_measured_fraction_theta_max 0.942 _diffrn_measurement_device_type 'Bruker--Nonius KappaCCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'Bruker--Nonius FR591 rotating anode' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0519 _diffrn_reflns_av_sigmaI/netI 0.0334 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min -7 _diffrn_reflns_limit_k_max 13 _diffrn_reflns_limit_k_min -13 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min -18 _diffrn_reflns_number 11989 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 24.99 _diffrn_reflns_theta_min 3.13 _diffrn_standards_decay_% 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.495 _exptl_absorpt_correction_T_max 0.961 _exptl_absorpt_correction_T_min 0.932 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SORTAV; Blessing, 1995)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.628 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 560 _exptl_crystal_size_max 0.35 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.08 _refine_diff_density_max 0.215 _refine_diff_density_min -0.485 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.073 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 162 _refine_ls_number_reflns 1920 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.073 _refine_ls_R_factor_all 0.0423 _refine_ls_R_factor_gt 0.0321 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = 1/[\s^2^(Fo^2^)+(0.0425P)^2^+0.5029P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0771 _refine_ls_wR_factor_ref 0.0819 _reflns_number_gt 1619 _reflns_number_total 1920 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file na6293.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21/n' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_exptl_absorpt_correction_type' value 'Multi-scan' changed to 'multi-scan' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2203323 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol N1 0.5271(3) 0.37582(15) 0.10006(11) 0.0146(4) Uani d . 1 N H1 0.559(4) 0.451(2) 0.1012(16) 0.027(7) Uiso d . 1 H C2 0.3494(3) 0.33538(17) 0.14014(12) 0.0139(4) Uani d . 1 C S21 0.20999(8) 0.44136(4) 0.19888(3) 0.01700(17) Uani d . 1 S C22 -0.0187(3) 0.35287(18) 0.23366(13) 0.0163(5) Uani d . 1 C H221 -0.1402 0.4071 0.2478 0.020 Uiso calc R 1 H H222 -0.0697 0.3018 0.1867 0.020 Uiso calc R 1 H C23 0.0318(3) 0.27423(18) 0.30892(13) 0.0161(4) Uani d . 1 C H231 0.0684 0.3244 0.3582 0.020 Uiso calc R 1 H H232 0.1595 0.2230 0.2972 0.020 Uiso calc R 1 H S24 -0.19989(8) 0.18388(4) 0.33057(3) 0.01565(16) Uani d . 1 S O25 -0.3790(2) 0.26434(13) 0.34850(11) 0.0264(4) Uani d . 1 O O26 -0.1371(2) 0.11032(12) 0.40262(9) 0.0213(4) Uani d . 1 O O27 -0.2422(3) 0.11280(13) 0.25562(10) 0.0247(4) Uani d . 1 O N3 0.2810(3) 0.22453(14) 0.13575(11) 0.0160(4) Uani d . 1 N C4 0.4018(3) 0.14818(18) 0.09037(13) 0.0170(5) Uani d . 1 C O41 0.3365(3) 0.03806(12) 0.08472(10) 0.0231(4) Uani d . 1 O H41 0.183(6) 0.026(3) 0.104(2) 0.069(11) Uiso d . 1 H C5 0.5926(3) 0.18368(18) 0.04977(13) 0.0167(5) Uani d . 1 C H5 0.6789 0.1275 0.0205 0.021 Uiso calc R 1 H C6 0.6509(3) 0.30021(18) 0.05327(13) 0.0155(4) Uani d . 1 C C61 0.8393(3) 0.35392(19) 0.00879(13) 0.0197(5) Uani d . 1 C H611 0.9377 0.2905 -0.0096 0.025 Uiso calc R 1 H H612 0.9189 0.4078 0.0468 0.025 Uiso calc R 1 H H613 0.7852 0.3987 -0.0401 0.025 Uiso calc R 1 H O1W -0.0506(3) 0.00014(15) 0.12299(11) 0.0227(4) Uani d . 1 O H1W -0.105(5) 0.035(3) 0.163(2) 0.048(9) Uiso d . 1 H H2W -0.076(5) -0.076(3) 0.1329(19) 0.046(8) Uiso d . 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0156(9) 0.0125(9) 0.0157(9) -0.0010(7) 0.0015(7) -0.0008(7) C2 0.0139(10) 0.0142(10) 0.0137(10) 0.0014(8) 0.0000(8) 0.0009(8) S21 0.0192(3) 0.0107(3) 0.0214(3) -0.00097(19) 0.0074(2) -0.00142(19) C22 0.0145(11) 0.0140(10) 0.0204(11) 0.0007(8) 0.0047(9) 0.0007(8) C23 0.0158(11) 0.0137(10) 0.0189(11) -0.0020(8) 0.0022(9) 0.0003(8) S24 0.0167(3) 0.0108(3) 0.0197(3) 0.00051(18) 0.0053(2) 0.00069(19) O25 0.0211(8) 0.0151(8) 0.0435(10) 0.0052(6) 0.0145(7) 0.0044(7) O26 0.0264(9) 0.0152(7) 0.0223(8) 0.0006(6) 0.0050(7) 0.0049(6) O27 0.0266(9) 0.0226(8) 0.0249(8) -0.0095(6) 0.0043(7) -0.0050(7) N3 0.0175(9) 0.0123(9) 0.0182(9) -0.0004(7) 0.0032(7) -0.0013(7) C4 0.0213(11) 0.0135(10) 0.0161(11) 0.0029(8) 0.0003(9) -0.0006(8) O41 0.0269(9) 0.0124(8) 0.0304(9) -0.0030(6) 0.0083(7) -0.0048(6) C5 0.0174(11) 0.0160(10) 0.0166(11) 0.0040(8) 0.0033(9) -0.0009(8) C6 0.0145(10) 0.0194(11) 0.0124(10) 0.0024(8) 0.0000(8) 0.0010(8) C61 0.0186(11) 0.0217(11) 0.0190(11) -0.0009(8) 0.0036(9) 0.0003(9) O1W 0.0255(9) 0.0168(9) 0.0258(9) -0.0021(6) 0.0033(7) -0.0015(7) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 N1 C6 120.58(17) C2 N1 H1 120.1(17) C6 N1 H1 119.2(17) N3 C2 N1 123.47(18) N3 C2 S21 121.01(15) N1 C2 S21 115.52(14) C2 S21 C22 100.28(9) C23 C22 S21 114.49(15) C23 C22 H221 108.6 S21 C22 H221 108.6 C23 C22 H222 108.6 S21 C22 H222 108.6 H221 C22 H222 107.6 C22 C23 S24 109.48(14) C22 C23 H231 109.8 S24 C23 H231 109.8 C22 C23 H232 109.8 S24 C23 H232 109.8 H231 C23 H232 108.2 O25 S24 O27 112.27(10) O25 S24 O26 112.60(9) O27 S24 O26 112.16(9) O25 S24 C23 106.85(9) O27 S24 C23 106.38(9) O26 S24 C23 106.01(9) C2 N3 C4 116.90(17) O41 C4 N3 118.01(18) O41 C4 C5 119.62(18) N3 C4 C5 122.37(18) C4 O41 H41 114(2) C6 C5 C4 118.35(18) C6 C5 H5 120.8 C4 C5 H5 120.8 C5 C6 N1 118.22(18) C5 C6 C61 125.08(19) N1 C6 C61 116.70(18) C6 C61 H611 109.5 C6 C61 H612 109.5 H611 C61 H612 109.5 C6 C61 H613 109.5 H611 C61 H613 109.5 H612 C61 H613 109.5 H1W O1W H2W 104(3) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance N1 C2 1.349(3) N1 C6 1.368(3) N1 H1 0.87(3) C2 N3 1.314(3) C2 S21 1.746(2) S21 C22 1.810(2) C22 C23 1.518(3) C22 H221 0.99 C22 H222 0.99 C23 S24 1.7810(19) C23 H231 0.99 C23 H232 0.99 S24 O25 1.4518(15) S24 O27 1.4572(16) S24 O26 1.4612(15) N3 C4 1.350(3) C4 O41 1.301(3) C4 C5 1.403(3) O41 H41 1.00(4) C5 C6 1.356(3) C5 H5 0.95 C6 C61 1.491(3) C61 H611 0.98 C61 H612 0.98 C61 H613 0.98 O1W H1W 0.83(3) O1W H2W 0.88(3) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N1 H1 O26 2 0.87(3) 1.85(3) 2.716(2) 176(2) yes O41 H41 O1W . 1.00(4) 1.50(4) 2.491(2) 174(3) yes O1W H1W O27 . 0.83(3) 1.92(4) 2.747(2) 177(3) yes O1W H2W O25 2_445 0.88(3) 1.84(4) 2.720(2) 178(3) yes C22 H222 N3 . 0.99 2.46 2.824(3) 101 yes C23 H232 N3 . 0.99 2.70 3.229(3) 114 yes C22 H221 O27 2_455 0.99 2.42 3.268(2) 144 yes C5 H5 O41 3_655 0.95 2.51 3.320(2) 144 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C6 N1 C2 N3 -1.7(3) C6 N1 C2 S21 178.96(15) N3 C2 S21 C22 -3.3(2) N1 C2 S21 C22 176.12(16) C2 S21 C22 C23 81.06(16) S21 C22 C23 S24 -175.24(10) C22 C23 S24 O25 -60.42(16) C22 C23 S24 O27 59.71(16) C22 C23 S24 O26 179.27(13) N1 C2 N3 C4 2.1(3) S21 C2 N3 C4 -178.58(15) C2 N3 C4 O41 -179.61(19) C2 N3 C4 C5 0.4(3) O41 C4 C5 C6 176.8(2) N3 C4 C5 C6 -3.2(3) C4 C5 C6 N1 3.5(3) C4 C5 C6 C61 -175.5(2) C2 N1 C6 C5 -1.3(3) C2 N1 C6 C61 177.84(18)