#------------------------------------------------------------------------------ #$Date: 2011-09-28 15:24:46 +0100 (Wed, 28 Sep 2011) $ #$Revision: 26848 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/33/2203382.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2203382 loop_ _publ_author_name 'K. Ravikumar' 'G. Y. S. K. Swamy' 'Harihara Krishnan' _publ_section_title ; \a-{3-[2-(Dimethylammonio)ethyl]-1H-indol-5-yl}-N-methylmethanesulfonamide (sumatriptan) succinate ; _journal_issue 4 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first o618 _journal_page_last o620 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C14 H22 N3 O2 S 1+, C4 H5 O4 1-' _chemical_formula_moiety 'C14 H22 N3 O2 S 1+, C4 H5 O4 1-' _chemical_formula_sum 'C18 H27 N3 O6 S' _chemical_formula_weight 413.49 _chemical_name_systematic ; \a-{3-[2-(Dimethylammonio)ethyl]-1H-indol-5-yl}-N-methylmethanesulfonamide (sumatriptan) succinate ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 92.602(2) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 9.9076(9) _cell_length_b 11.2342(10) _cell_length_c 18.7010(16) _cell_measurement_reflns_used 2738 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 23.83 _cell_measurement_theta_min 2.84 _cell_volume 2079.3(3) _computing_cell_refinement 'SAINT (Bruker, 2001)' _computing_data_collection 'SMART (Bruker, 2001)' _computing_data_reduction SAINT _computing_molecular_graphics ; 'ORTEP3 (Farrugia, 1997) and PLATON (Spek, 2003)' ; _computing_publication_material 'SHELXL97 and PARST (Nardelli, 1995)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.855 _diffrn_measured_fraction_theta_max 0.855 _diffrn_measurement_device 'Bruker Smart APEX' _diffrn_measurement_device_type 'Bruker Smart APEX CCD area-detector' _diffrn_measurement_method '\w scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0334 _diffrn_reflns_av_sigmaI/netI 0.0432 _diffrn_reflns_limit_h_max 11 _diffrn_reflns_limit_h_min -13 _diffrn_reflns_limit_k_max 14 _diffrn_reflns_limit_k_min -14 _diffrn_reflns_limit_l_max 21 _diffrn_reflns_limit_l_min -21 _diffrn_reflns_number 12456 _diffrn_reflns_theta_full 28.05 _diffrn_reflns_theta_max 28.05 _diffrn_reflns_theta_min 2.06 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.194 _exptl_absorpt_correction_type none _exptl_crystal_colour Colourless _exptl_crystal_density_diffrn 1.321 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Cubes _exptl_crystal_F_000 880 _exptl_crystal_size_max 0.21 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.18 _refine_diff_density_max 0.350 _refine_diff_density_min -0.293 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.101 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 272 _refine_ls_number_reflns 4525 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.101 _refine_ls_R_factor_all 0.0857 _refine_ls_R_factor_gt 0.0639 _refine_ls_shift/su_max <0.001 _refine_ls_shift/su_mean <0.001 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.072P)^2^+0.603P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1461 _refine_ls_wR_factor_ref 0.1576 _reflns_number_gt 3431 _reflns_number_total 4525 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file bt6424.cif _[local]_cod_cif_authors_sg_H-M 'P 21/c' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2203382 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol S1 0.07257(6) 0.83322(5) 0.17545(4) 0.03659(19) Uani d . 1 S O1 -0.01500(19) 0.73739(18) 0.15476(11) 0.0534(5) Uani d . 1 O O2 0.0708(2) 0.93553(18) 0.13051(12) 0.0619(6) Uani d . 1 O O3 0.4193(3) 0.5607(2) 0.32896(14) 0.0750(8) Uani d . 1 O O4 0.5084(2) 0.44690(18) 0.24719(11) 0.0560(5) Uani d . 1 O O5 0.19980(19) 0.3020(2) 0.18001(10) 0.0566(6) Uani d . 1 O O6 0.3803(2) 0.19826(17) 0.15821(11) 0.0576(6) Uani d . 1 O N1 0.1160(2) 0.2409(2) 0.04499(13) 0.0420(5) Uani d . 1 N N2 0.3995(2) 0.6487(2) -0.09081(14) 0.0508(6) Uani d . 1 N N3 0.0403(3) 0.8678(2) 0.25592(13) 0.0477(6) Uani d . 1 N C1 0.3188(2) 0.6058(2) 0.01593(14) 0.0375(6) Uani d . 1 C C2 0.2799(2) 0.6322(2) 0.08447(14) 0.0395(6) Uani d . 1 C H2 0.2463 0.5725 0.1132 0.047 Uiso calc R 1 H C3 0.2910(2) 0.7475(2) 0.11008(15) 0.0415(6) Uani d . 1 C C4 0.3435(3) 0.8372(2) 0.06647(16) 0.0465(7) Uani d . 1 C H4 0.3516 0.9143 0.0843 0.056 Uiso calc R 1 H C5 0.3828(3) 0.8141(2) -0.00145(16) 0.0467(7) Uani d . 1 C H5 0.4179 0.8739 -0.0296 0.056 Uiso calc R 1 H C6 0.3686(2) 0.6983(2) -0.02692(15) 0.0419(6) Uani d . 1 C C7 0.3748(3) 0.5298(3) -0.08910(16) 0.0490(7) Uani d . 1 C H7 0.3907 0.4773 -0.1262 0.059 Uiso calc R 1 H C8 0.3238(2) 0.4983(2) -0.02565(15) 0.0425(6) Uani d . 1 C C9 0.2917(3) 0.3755(2) -0.00128(16) 0.0472(7) Uani d . 1 C H9A 0.3374 0.3618 0.0450 0.057 Uiso calc R 1 H H9B 0.3270 0.3188 -0.0348 0.057 Uiso calc R 1 H C10 0.1421(3) 0.3530(2) 0.00500(15) 0.0420(6) Uani d . 1 C H10A 0.1022 0.4195 0.0295 0.050 Uiso calc R 1 H H10B 0.0991 0.3478 -0.0425 0.050 Uiso calc R 1 H C11 -0.0308(3) 0.2233(3) 0.05453(19) 0.0619(9) Uani d . 1 C H11A -0.0765 0.2127 0.0086 0.093 Uiso calc R 1 H H11B -0.0668 0.2918 0.0777 0.093 Uiso calc R 1 H H11C -0.0439 0.1540 0.0835 0.093 Uiso calc R 1 H C12 0.1755(3) 0.1337(2) 0.01224(17) 0.0550(8) Uani d . 1 C H12A 0.1523 0.0644 0.0391 0.083 Uiso calc R 1 H H12B 0.2720 0.1418 0.0127 0.083 Uiso calc R 1 H H12C 0.1405 0.1257 -0.0363 0.083 Uiso calc R 1 H C13 0.2413(2) 0.7789(3) 0.18262(15) 0.0449(6) Uani d . 1 C H13A 0.2997 0.8391 0.2047 0.054 Uiso calc R 1 H H13B 0.2451 0.7089 0.2130 0.054 Uiso calc R 1 H C14 0.0730(4) 0.9859(3) 0.2831(2) 0.0902(13) Uani d . 1 C H14A 0.1627 1.0070 0.2704 0.135 Uiso calc R 1 H H14B 0.0683 0.9863 0.3343 0.135 Uiso calc R 1 H H14C 0.0098 1.0425 0.2627 0.135 Uiso calc R 1 H C15 0.4280(3) 0.4625(2) 0.29223(15) 0.0425(6) Uani d . 1 C C16 0.3292(3) 0.3707(3) 0.31501(16) 0.0511(7) Uani d . 1 C H16A 0.2384 0.4000 0.3045 0.061 Uiso calc R 1 H H16B 0.3401 0.3602 0.3664 0.061 Uiso calc R 1 H C17 0.3443(3) 0.2517(2) 0.27948(15) 0.0469(7) Uani d . 1 C H17A 0.2885 0.1943 0.3032 0.056 Uiso calc R 1 H H17B 0.4375 0.2261 0.2862 0.056 Uiso calc R 1 H C18 0.3062(3) 0.2509(2) 0.20069(14) 0.0398(6) Uani d . 1 C H1 0.435(3) 0.681(3) -0.1240(18) 0.054(9) Uiso d . 1 H H2A 0.153(3) 0.254(2) 0.0882(17) 0.050(8) Uiso d . 1 H H3 -0.031(4) 0.841(3) 0.267(2) 0.074(11) Uiso d . 1 H H3A 0.491(4) 0.608(3) 0.322(2) 0.087(12) Uiso d . 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 0.0356(3) 0.0415(3) 0.0329(4) -0.0018(2) 0.0040(2) 0.0000(3) O1 0.0491(11) 0.0636(12) 0.0473(13) -0.0125(9) 0.0014(9) -0.0153(10) O2 0.0648(13) 0.0614(12) 0.0607(14) 0.0118(10) 0.0169(11) 0.0223(11) O3 0.0746(16) 0.0699(15) 0.0830(18) -0.0204(12) 0.0322(14) -0.0317(13) O4 0.0598(12) 0.0602(12) 0.0496(13) -0.0076(9) 0.0213(10) -0.0013(10) O5 0.0406(10) 0.0946(16) 0.0345(12) 0.0141(10) 0.0013(8) 0.0026(10) O6 0.0696(14) 0.0568(12) 0.0467(13) 0.0193(10) 0.0071(10) 0.0002(10) N1 0.0429(13) 0.0531(13) 0.0297(14) -0.0018(10) -0.0030(10) 0.0033(10) N2 0.0479(14) 0.0693(16) 0.0364(15) -0.0086(11) 0.0142(11) 0.0044(12) N3 0.0466(14) 0.0567(14) 0.0407(15) -0.0116(11) 0.0106(11) -0.0122(11) C1 0.0270(12) 0.0489(14) 0.0368(16) 0.0036(10) 0.0028(10) 0.0047(11) C2 0.0337(13) 0.0490(14) 0.0360(16) 0.0043(10) 0.0048(11) 0.0063(11) C3 0.0284(12) 0.0568(15) 0.0392(16) 0.0039(11) 0.0016(11) 0.0015(12) C4 0.0369(14) 0.0477(14) 0.0549(19) -0.0032(11) 0.0033(12) -0.0020(13) C5 0.0378(14) 0.0530(16) 0.0500(19) -0.0061(11) 0.0092(12) 0.0081(13) C6 0.0300(12) 0.0558(15) 0.0405(17) -0.0015(11) 0.0068(11) 0.0067(12) C7 0.0463(15) 0.0609(17) 0.0405(17) -0.0029(13) 0.0083(12) -0.0059(13) C8 0.0360(13) 0.0506(14) 0.0414(17) 0.0003(11) 0.0064(11) 0.0003(12) C9 0.0432(15) 0.0522(15) 0.0465(18) 0.0068(11) 0.0068(13) -0.0005(13) C10 0.0449(14) 0.0446(14) 0.0360(16) 0.0013(11) -0.0029(11) 0.0016(11) C11 0.0439(16) 0.080(2) 0.062(2) -0.0086(14) 0.0036(15) 0.0053(17) C12 0.069(2) 0.0468(15) 0.049(2) 0.0042(13) 0.0012(15) 0.0066(13) C13 0.0371(14) 0.0606(16) 0.0369(17) 0.0036(11) 0.0001(11) -0.0016(13) C14 0.115(3) 0.074(2) 0.082(3) -0.024(2) 0.014(2) -0.043(2) C15 0.0399(14) 0.0535(15) 0.0339(16) -0.0001(11) -0.0002(12) -0.0034(12) C16 0.0466(16) 0.0756(19) 0.0316(16) -0.0163(13) 0.0055(12) -0.0060(14) C17 0.0504(16) 0.0551(15) 0.0347(17) -0.0129(12) -0.0053(12) 0.0087(12) C18 0.0392(14) 0.0434(13) 0.0370(17) -0.0051(11) 0.0042(11) 0.0047(11) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O2 S1 O1 117.30(10) y O2 S1 N3 111.20(10) y O1 S1 N3 107.10(10) y O2 S1 C13 108.00(10) y O1 S1 C13 108.70(10) y N3 S1 C13 103.90(10) y C15 O3 H3A 111(2) ? C12 N1 C11 110.5(2) y C12 N1 C10 113.4(2) y C11 N1 C10 111.4(2) y C12 N1 H2A 111.1(19) ? C11 N1 H2A 106.1(19) ? C10 N1 H2A 103.9(19) ? C7 N2 C6 109.4(2) y C7 N2 H1 123(2) ? C6 N2 H1 127(2) ? C14 N3 S1 120.0(2) ? C14 N3 H3 116(3) ? S1 N3 H3 112(3) ? C2 C1 C6 119.0(2) ? C2 C1 C8 134.2(2) ? C6 C1 C8 106.8(2) ? C3 C2 C1 119.9(2) ? C3 C2 H2 120.0 ? C1 C2 H2 120.0 ? C2 C3 C4 119.6(2) ? C2 C3 C13 120.4(2) ? C4 C3 C13 119.9(2) ? C5 C4 C3 121.9(3) ? C5 C4 H4 119.0 ? C3 C4 H4 119.0 ? C4 C5 C6 117.8(2) ? C4 C5 H5 121.1 ? C6 C5 H5 121.1 ? N2 C6 C5 131.2(2) ? N2 C6 C1 107.1(2) ? C5 C6 C1 121.7(3) ? C8 C7 N2 110.6(3) ? C8 C7 H7 124.7 ? N2 C7 H7 124.7 ? C7 C8 C1 106.1(2) ? C7 C8 C9 126.9(3) ? C1 C8 C9 126.7(2) ? C8 C9 C10 113.6(2) ? C8 C9 H9A 108.8 ? C10 C9 H9A 108.8 ? C8 C9 H9B 108.8 ? C10 C9 H9B 108.8 ? H9A C9 H9B 107.7 ? N1 C10 C9 111.8(2) ? N1 C10 H10A 109.3 ? C9 C10 H10A 109.3 ? N1 C10 H10B 109.3 ? C9 C10 H10B 109.3 ? H10A C10 H10B 107.9 ? N1 C11 H11A 109.5 ? N1 C11 H11B 109.5 ? H11A C11 H11B 109.5 ? N1 C11 H11C 109.5 ? H11A C11 H11C 109.5 ? H11B C11 H11C 109.5 ? N1 C12 H12A 109.5 ? N1 C12 H12B 109.5 ? H12A C12 H12B 109.5 ? N1 C12 H12C 109.5 ? H12A C12 H12C 109.5 ? H12B C12 H12C 109.5 ? C3 C13 S1 110.90(18) ? C3 C13 H13A 109.5 ? S1 C13 H13A 109.5 ? C3 C13 H13B 109.5 ? S1 C13 H13B 109.5 ? H13A C13 H13B 108.0 ? N3 C14 H14A 109.5 ? N3 C14 H14B 109.5 ? H14A C14 H14B 109.5 ? N3 C14 H14C 109.5 ? H14A C14 H14C 109.5 ? H14B C14 H14C 109.5 ? O4 C15 O3 123.8(3) ? O4 C15 C16 124.3(3) ? O3 C15 C16 111.9(2) ? C15 C16 C17 114.0(2) ? C15 C16 H16A 108.7 ? C17 C16 H16A 108.7 ? C15 C16 H16B 108.7 ? C17 C16 H16B 108.7 ? H16A C16 H16B 107.6 ? C16 C17 C18 114.4(2) ? C16 C17 H17A 108.7 ? C18 C17 H17A 108.7 ? C16 C17 H17B 108.7 ? C18 C17 H17B 108.7 ? H17A C17 H17B 107.6 ? O5 C18 O6 122.1(3) ? O5 C18 C17 118.2(2) ? O6 C18 C17 119.7(2) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag S1 O2 1.423(2) y S1 O1 1.425(2) y S1 N3 1.601(2) y S1 C13 1.779(3) y O3 C15 1.304(3) y O3 H3A 0.90(4) ? O4 C15 1.199(3) y O5 C18 1.246(3) y O6 C18 1.254(3) y N1 C12 1.484(4) y N1 C11 1.487(4) y N1 C10 1.493(3) y N1 H2A 0.89(3) ? N2 C7 1.358(4) y N2 C6 1.366(4) y N2 H1 0.82(3) ? N3 C14 1.452(4) y N3 H3 0.80(4) ? C1 C2 1.387(4) ? C1 C6 1.415(3) ? C1 C8 1.438(4) ? C2 C3 1.384(4) ? C2 H2 0.9300 ? C3 C4 1.410(4) ? C3 C13 1.506(4) ? C4 C5 1.370(4) ? C4 H4 0.9300 ? C5 C6 1.391(4) ? C5 H5 0.9300 ? C7 C8 1.358(4) ? C7 H7 0.9300 ? C8 C9 1.491(4) ? C9 C10 1.514(4) ? C9 H9A 0.9700 ? C9 H9B 0.9700 ? C10 H10A 0.9700 ? C10 H10B 0.9700 ? C11 H11A 0.9600 ? C11 H11B 0.9600 ? C11 H11C 0.9600 ? C12 H12A 0.9600 ? C12 H12B 0.9600 ? C12 H12C 0.9600 ? C13 H13A 0.9700 ? C13 H13B 0.9700 ? C14 H14A 0.9600 ? C14 H14B 0.9600 ? C14 H14C 0.9600 ? C15 C16 1.497(4) ? C16 C17 1.503(4) ? C16 H16A 0.9700 ? C16 H16B 0.9700 ? C17 C18 1.504(4) ? C17 H17A 0.9700 ? C17 H17B 0.9700 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H2A O5 . 0.88(3) 1.84(3) 2.710(3) 168(3) N2 H1 O6 3_665 0.81(3) 2.39(3) 3.091(3) 145(3) O3 H3A O6 2_655 0.90(4) 1.66(4) 2.519(3) 159(4) N3 H3 O5 2_555 0.80(4) 2.03(4) 2.811(3) 164(4) C10 H10B O1 3_565 0.97 2.42 3.347(3) 160 C12 H12A O2 1_545 0.96 2.41 3.337(4) 163 C13 H13A O4 2_655 0.97 2.39 3.337(4) 164 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion O2 S1 N3 C14 -27.7(3) O1 S1 N3 C14 -157.0(3) C13 S1 N3 C14 88.1(3) C6 C1 C2 C3 -0.4(4) C8 C1 C2 C3 178.2(3) C1 C2 C3 C4 -0.8(4) C1 C2 C3 C13 176.3(2) C2 C3 C4 C5 0.7(4) C13 C3 C4 C5 -176.3(2) C3 C4 C5 C6 0.5(4) C7 N2 C6 C5 176.3(3) C7 N2 C6 C1 -1.6(3) C4 C5 C6 N2 -179.3(3) C4 C5 C6 C1 -1.7(4) C2 C1 C6 N2 179.8(2) C8 C1 C6 N2 0.9(3) C2 C1 C6 C5 1.6(4) C8 C1 C6 C5 -177.3(2) C6 N2 C7 C8 1.8(3) N2 C7 C8 C1 -1.2(3) N2 C7 C8 C9 -175.9(3) C2 C1 C8 C7 -178.5(3) C6 C1 C8 C7 0.2(3) C2 C1 C8 C9 -3.8(5) C6 C1 C8 C9 174.9(2) C7 C8 C9 C10 -112.1(3) C1 C8 C9 C10 74.2(4) C12 N1 C10 C9 -58.0(3) C11 N1 C10 C9 176.7(2) C8 C9 C10 N1 -166.9(2) C2 C3 C13 S1 -93.9(3) C4 C3 C13 S1 83.1(3) O2 S1 C13 C3 -59.0(2) O1 S1 C13 C3 69.1(2) N3 S1 C13 C3 -177.14(19) O4 C15 C16 C17 3.6(4) O3 C15 C16 C17 -174.2(3) C15 C16 C17 C18 -68.5(3) C16 C17 C18 O5 -45.0(3) C16 C17 C18 O6 135.8(3)