#------------------------------------------------------------------------------ #$Date: 2013-08-29 16:37:19 +0100 (Thu, 29 Aug 2013) $ #$Revision: 88064 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/34/2203414.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2203414 loop_ _publ_author_name 'Ya-Mei Guo' 'Zhi-Gang Geng' 'Xia Feng' _publ_section_title ; 2-(2-Pyridylamino)pyridinium perchlorate displaying a one-dimensional hydrogen-bonding supramolecular chain ; _journal_issue 4 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o645 _journal_page_last o646 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C10 H10 N3 1+, Cl O4 1-' _chemical_formula_moiety 'C10 H10 N3 1+, Cl O4 1-' _chemical_formula_sum 'C10 H10 Cl N3 O4' _chemical_formula_weight 271.66 _chemical_name_systematic ; ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 100.878(6) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.527(3) _cell_length_b 16.174(5) _cell_length_c 8.753(3) _cell_measurement_reflns_used 925 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 21.36 _cell_measurement_theta_min 2.68 _cell_volume 1185.5(7) _computing_cell_refinement SMART _computing_data_collection 'SMART (Bruker, 1998)' _computing_data_reduction 'SAINT (Bruker, 1998)' _computing_molecular_graphics 'DIAMOND (Brandenburg & Berndt, 1999)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.975 _diffrn_measured_fraction_theta_max 0.975 _diffrn_measurement_device_type 'Bruker SMART CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0496 _diffrn_reflns_av_sigmaI/netI 0.0691 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 19 _diffrn_reflns_limit_k_min -14 _diffrn_reflns_limit_l_max 10 _diffrn_reflns_limit_l_min -10 _diffrn_reflns_number 4794 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 2.43 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.333 _exptl_absorpt_correction_T_max 0.970 _exptl_absorpt_correction_T_min 0.866 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 2000)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.522 _exptl_crystal_density_method 'not measured' _exptl_crystal_description lamellar _exptl_crystal_F_000 560 _exptl_crystal_size_max 0.24 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.08 _refine_diff_density_max 0.394 _refine_diff_density_min -0.305 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.017 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 200 _refine_ls_number_reflns 2033 _refine_ls_number_restraints 110 _refine_ls_restrained_S_all 1.141 _refine_ls_R_factor_all 0.1308 _refine_ls_R_factor_gt 0.0695 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1137P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1641 _refine_ls_wR_factor_ref 0.1995 _reflns_number_gt 1165 _reflns_number_total 2033 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file cv6283.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21/c' _[local]_cod_cif_authors_sg_Hall -P_2ybc _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2203414 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol N1 0.5632(5) 0.4081(2) 0.3345(5) 0.0524(11) Uani d . 1 . . N H1A 0.4741 0.4103 0.3668 0.063 Uiso calc R 1 . . H N2 0.5632(5) 0.2676(3) 0.3746(5) 0.0619(13) Uani d . 1 . . N H2A 0.6122 0.2219 0.3658 0.074 Uiso calc R 1 . . H N3 0.3454(5) 0.3272(3) 0.4496(5) 0.0557(12) Uani d . 1 . . N C1 0.6275(7) 0.4786(3) 0.2920(6) 0.0597(15) Uani d . 1 . . C H1 0.5759 0.5288 0.2987 0.072 Uiso calc R 1 . . H C2 0.7664(7) 0.4766(4) 0.2398(6) 0.0657(16) Uani d . 1 . . C H2 0.8109 0.5251 0.2098 0.079 Uiso calc R 1 . . H C3 0.8425(7) 0.4010(4) 0.2315(7) 0.0660(16) Uani d . 1 . . C H3 0.9389 0.3989 0.1964 0.079 Uiso calc R 1 . . H C4 0.7768(7) 0.3307(3) 0.2742(6) 0.0590(15) Uani d . 1 . . C H4 0.8271 0.2801 0.2675 0.071 Uiso calc R 1 . . H C5 0.6345(6) 0.3342(3) 0.3278(6) 0.0448(12) Uani d . 1 . . C C6 0.4247(6) 0.2588(3) 0.4348(5) 0.0454(12) Uani d . 1 . . C C7 0.3729(6) 0.1816(3) 0.4733(6) 0.0535(13) Uani d . 1 . . C H7 0.4309 0.1343 0.4601 0.064 Uiso calc R 1 . . H C8 0.2356(7) 0.1765(4) 0.5306(7) 0.0672(16) Uani d . 1 . . C H8 0.1985 0.1255 0.5577 0.081 Uiso calc R 1 . . H C9 0.1528(7) 0.2472(4) 0.5480(7) 0.0693(16) Uani d . 1 . . C H9 0.0590 0.2450 0.5876 0.083 Uiso calc R 1 . . H C10 0.2103(7) 0.3213(3) 0.5062(7) 0.0615(15) Uani d . 1 . . C H10 0.1534 0.3693 0.5176 0.074 Uiso calc R 1 . . H Cl1 0.79976(15) 0.07711(8) 0.25313(15) 0.0535(5) Uani d D 1 . . Cl O1 0.8893(15) 0.1341(6) 0.1885(15) 0.118(4) Uani d PDU 0.564(14) A 1 O O2 0.7529(13) 0.0069(6) 0.1559(12) 0.089(3) Uani d PDU 0.564(14) A 1 O O3 0.9093(11) 0.0423(7) 0.3879(9) 0.124(5) Uani d PDU 0.564(14) A 1 O O4 0.6739(10) 0.1110(6) 0.3156(16) 0.102(4) Uani d PDU 0.564(14) A 1 O O1' 0.9058(18) 0.1027(11) 0.1479(18) 0.133(7) Uani d PDU 0.436(14) A 2 O O2' 0.7787(19) -0.0073(5) 0.244(2) 0.116(6) Uani d PDU 0.436(14) A 2 O O3' 0.877(2) 0.1081(14) 0.4022(15) 0.234(11) Uani d PDU 0.436(14) A 2 O O4' 0.6563(10) 0.1244(6) 0.1991(16) 0.075(4) Uani d PDU 0.436(14) A 2 O loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.048(2) 0.052(3) 0.060(3) -0.001(2) 0.018(2) 0.001(2) N2 0.059(3) 0.046(3) 0.084(3) 0.008(2) 0.024(3) -0.002(2) N3 0.052(3) 0.049(3) 0.069(3) 0.002(2) 0.017(2) 0.002(2) C1 0.064(4) 0.043(3) 0.074(4) 0.000(3) 0.018(3) 0.005(3) C2 0.064(4) 0.056(4) 0.080(4) -0.009(3) 0.023(3) 0.011(3) C3 0.059(3) 0.069(4) 0.078(4) -0.001(3) 0.033(3) -0.001(3) C4 0.063(4) 0.046(3) 0.074(4) 0.008(3) 0.027(3) 0.003(3) C5 0.047(3) 0.038(3) 0.050(3) -0.002(2) 0.011(2) 0.003(2) C6 0.042(3) 0.047(3) 0.047(3) -0.005(2) 0.009(2) -0.004(2) C7 0.054(3) 0.045(3) 0.063(3) -0.001(3) 0.015(3) -0.004(2) C8 0.074(4) 0.054(4) 0.075(4) -0.019(3) 0.020(3) 0.004(3) C9 0.052(3) 0.082(5) 0.078(4) -0.008(3) 0.022(3) -0.001(3) C10 0.056(3) 0.056(4) 0.075(4) -0.001(3) 0.019(3) -0.008(3) Cl1 0.0494(8) 0.0499(8) 0.0611(8) -0.0010(7) 0.0102(6) -0.0037(7) O1 0.140(8) 0.080(6) 0.155(9) -0.028(6) 0.084(7) -0.009(6) O2 0.110(7) 0.067(6) 0.089(6) 0.002(5) 0.020(5) -0.023(5) O3 0.116(7) 0.162(9) 0.092(6) 0.045(6) 0.017(6) 0.006(6) O4 0.081(5) 0.090(6) 0.144(9) 0.023(5) 0.046(6) -0.023(6) O1' 0.133(10) 0.135(11) 0.145(10) -0.005(8) 0.066(8) 0.019(8) O2' 0.124(9) 0.070(7) 0.152(11) -0.006(6) 0.018(9) 0.014(7) O3' 0.244(14) 0.219(14) 0.223(14) 0.003(10) 0.005(10) -0.005(10) O4' 0.072(6) 0.058(6) 0.093(8) 0.016(4) 0.009(5) -0.007(5) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C5 N1 C1 121.9(4) yes C5 N1 H1A 119.1 ? C1 N1 H1A 119.1 ? C5 N2 C6 131.8(4) yes C5 N2 H2A 114.1 ? C6 N2 H2A 114.1 ? C6 N3 C10 118.1(4) yes C2 C1 N1 120.1(5) ? C2 C1 H1 119.9 ? N1 C1 H1 119.9 ? C1 C2 C3 119.2(5) ? C1 C2 H2 120.4 ? C3 C2 H2 120.4 ? C4 C3 C2 120.2(5) ? C4 C3 H3 119.9 ? C2 C3 H3 119.9 ? C3 C4 C5 119.7(5) ? C3 C4 H4 120.2 ? C5 C4 H4 120.2 ? N2 C5 N1 117.7(4) ? N2 C5 C4 123.3(4) ? N1 C5 C4 118.9(4) ? N3 C6 C7 122.7(5) ? N3 C6 N2 116.2(4) ? C7 C6 N2 121.1(5) ? C8 C7 C6 118.7(5) ? C8 C7 H7 120.7 ? C6 C7 H7 120.7 ? C7 C8 C9 119.2(5) ? C7 C8 H8 120.4 ? C9 C8 H8 120.4 ? C8 C9 C10 118.9(5) ? C8 C9 H9 120.5 ? C10 C9 H9 120.5 ? N3 C10 C9 122.4(5) ? N3 C10 H10 118.8 ? C9 C10 H10 118.8 ? O2' Cl1 O1 135.4(8) ? O2' Cl1 O4 108.0(8) ? O1 Cl1 O4 114.8(6) ? O1 Cl1 O2 113.5(6) ? O4 Cl1 O2 113.2(5) ? O2' Cl1 O3' 115.5(8) ? O1 Cl1 O3' 86.9(10) ? O4 Cl1 O3' 76.2(9) ? O2 Cl1 O3' 147.9(9) ? O2' Cl1 O4' 114.4(7) ? O1 Cl1 O4' 90.7(7) ? O2 Cl1 O4' 95.8(6) ? O3' Cl1 O4' 109.1(8) ? O2' Cl1 O1' 109.4(8) ? O4 Cl1 O1' 137.8(8) ? O2 Cl1 O1' 89.2(8) ? O3' Cl1 O1' 104.0(9) ? O4' Cl1 O1' 103.3(7) ? O2' Cl1 O3 73.9(7) ? O1 Cl1 O3 105.5(7) ? O4 Cl1 O3 104.7(6) ? O2 Cl1 O3 103.7(5) ? O3' Cl1 O3 45.0(8) ? O4' Cl1 O3 146.6(6) ? O1' Cl1 O3 103.8(8) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag N1 C5 1.347(6) yes N1 C1 1.349(6) yes N1 H1A 0.8600 ? N2 C5 1.338(6) yes N2 C6 1.388(6) yes N2 H2A 0.8600 ? N3 C6 1.316(6) yes N3 C10 1.341(6) yes C1 C2 1.348(8) ? C1 H1 0.9300 ? C2 C3 1.393(8) ? C2 H2 0.9300 ? C3 C4 1.352(7) ? C3 H3 0.9300 ? C4 C5 1.383(6) ? C4 H4 0.9300 ? C6 C7 1.387(7) ? C7 C8 1.361(7) ? C7 H7 0.9300 ? C8 C9 1.367(8) ? C8 H8 0.9300 ? C9 C10 1.371(7) ? C9 H9 0.9300 ? C10 H10 0.9300 ? Cl1 O2' 1.377(9) ? Cl1 O1 1.384(7) ? Cl1 O4 1.405(6) ? Cl1 O2 1.430(7) ? Cl1 O3' 1.436(10) ? Cl1 O4' 1.444(8) ? Cl1 O1' 1.467(9) ? Cl1 O3 1.471(7) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N1 H1A N3 1_555 0.860 1.958 2.623(6) 133.2 yes N1 H1A O2 2_655 0.860 2.466 3.149(5) 136.8 yes N2 H2A O4 1_555 0.860 1.942 2.785(6) 166.2 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C5 N1 C1 C2 0.5(8) N1 C1 C2 C3 -0.4(8) C1 C2 C3 C4 0.5(9) C2 C3 C4 C5 -0.7(8) C6 N2 C5 N1 -1.5(8) C6 N2 C5 C4 178.2(5) C1 N1 C5 N2 179.0(4) C1 N1 C5 C4 -0.7(7) C3 C4 C5 N2 -178.9(5) C3 C4 C5 N1 0.8(7) C10 N3 C6 C7 0.9(7) C10 N3 C6 N2 179.5(4) C5 N2 C6 N3 0.3(8) C5 N2 C6 C7 179.0(5) N3 C6 C7 C8 -0.9(8) N2 C6 C7 C8 -179.5(5) C6 C7 C8 C9 0.2(8) C7 C8 C9 C10 0.4(9) C6 N3 C10 C9 -0.2(8) C8 C9 C10 N3 -0.4(9) _cod_database_fobs_code 2203414