#------------------------------------------------------------------------------ #$Date: 2011-01-02 20:00:31 +0000 (Sun, 02 Jan 2011) $ #$Revision: 5310 $ #$URL: svn://www.crystallography.net/cod/cif/2/2203466.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2203466 loop_ _publ_author_name 'Song, Qing Bao' 'Hu, You Hua' 'Shen, Tian Hua' 'Jin, Zhi Min' _publ_section_title ; 1-Aminocyclopentanecarboxamide ; _journal_issue 4 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first o539 _journal_page_last o541 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C6 H12 N2 O' _chemical_formula_moiety 'C6 H12 N2 O' _chemical_formula_sum 'C6 H12 N2 O' _chemical_formula_weight 128.18 _chemical_name_systematic ; 1-Aminocyclopentanecarboxamide ; _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-C 2yc' _symmetry_space_group_name_H-M 'C 1 2/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 90.00 _cell_angle_beta 125.509(2) _cell_angle_gamma 90.00 _cell_formula_units_Z 16 _cell_length_a 15.3005(17) _cell_length_b 18.586(2) _cell_length_c 12.2311(14) _cell_measurement_reflns_used 869 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 18.92 _cell_measurement_theta_min 3.27 _cell_volume 2831.4(5) _computing_cell_refinement SMART _computing_data_collection 'SMART (Bruker, 2000)' _computing_data_reduction 'SAINT (Bruker, 2000)' _computing_molecular_graphics SHELXTL _computing_publication_material SHELXTL _computing_structure_refinement SHELXTL _computing_structure_solution 'SHELXTL (Bruker, 2000)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.997 _diffrn_measured_fraction_theta_max 0.997 _diffrn_measurement_device_type 'Bruker SMART Apex CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0313 _diffrn_reflns_av_sigmaI/netI 0.0568 _diffrn_reflns_limit_h_max 18 _diffrn_reflns_limit_h_min -18 _diffrn_reflns_limit_k_max 18 _diffrn_reflns_limit_k_min -22 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -13 _diffrn_reflns_number 7510 _diffrn_reflns_theta_full 25.99 _diffrn_reflns_theta_max 25.99 _diffrn_reflns_theta_min 1.97 _exptl_absorpt_coefficient_mu 0.084 _exptl_absorpt_correction_T_max 0.98 _exptl_absorpt_correction_T_min 0.97 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Bruker, 2000)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.203 _exptl_crystal_density_meas 'not measured' _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 1120 _exptl_crystal_size_max 0.33 _exptl_crystal_size_mid 0.25 _exptl_crystal_size_min 0.24 _refine_diff_density_max 0.094 _refine_diff_density_min -0.102 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.937 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 115 _refine_ls_number_reflns 1911 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.937 _refine_ls_R_factor_all 0.1404 _refine_ls_R_factor_gt 0.0468 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.05P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0725 _refine_ls_wR_factor_ref 0.1060 _reflns_number_gt 1672 _reflns_number_total 2772 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file na6295.cif _[local]_cod_cif_authors_sg_H-M 'C 2/c' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2203466 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z+1/2' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y, z-1/2' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol C1 0.32244(16) -0.03202(12) 0.9217(2) 0.0565(5) Uani d . 1 C H1A 0.3543 -0.0106 0.8802 0.068 Uiso d R 1 H H1B 0.3018 -0.0814 0.8917 0.068 Uiso d R 1 H C2 0.38486(17) -0.02823(12) 1.0683(2) 0.0583(6) Uani d . 1 C H2A 0.4607 -0.0324 1.1068 0.070 Uiso calc R 1 H H2B 0.3652 -0.0679 1.1015 0.070 Uiso calc R 1 H C3 0.36379(17) 0.04246(13) 1.1108(2) 0.0585(6) Uani d . 1 C H3A 0.3556 0.0351 1.1828 0.070 Uiso calc R 1 H H3B 0.4223 0.0760 1.1410 0.070 Uiso calc R 1 H C4 0.26252(17) 0.06999(12) 0.9884(2) 0.0584(6) Uani d . 1 C H4A 0.2751 0.1115 0.9511 0.070 Uiso calc R 1 H H4B 0.2099 0.0821 1.0057 0.070 Uiso calc R 1 H C5 0.22959(17) 0.00555(13) 0.8997(2) 0.0582(6) Uani d . 1 C C6 0.16907(18) 0.03985(13) 0.7593(2) 0.0574(5) Uani d . 1 C C7 0.16486(17) 0.76871(12) 0.5882(2) 0.0566(5) Uani d . 1 C H7A 0.2201 0.7320 0.6245 0.068 Uiso calc R 1 H H7B 0.1986 0.8157 0.6084 0.068 Uiso calc R 1 H C8 0.08277(16) 0.75903(12) 0.4366(2) 0.0567(6) Uani d . 1 C H8A 0.0619 0.8054 0.3919 0.068 Uiso calc R 1 H H8B 0.1131 0.7303 0.4000 0.068 Uiso calc R 1 H C9 -0.01012(17) 0.72261(13) 0.4167(2) 0.0582(6) Uani d . 1 C H9A -0.0192 0.6754 0.3774 0.070 Uiso calc R 1 H H9B -0.0748 0.7504 0.3569 0.070 Uiso calc R 1 H C10 0.01089(17) 0.71573(12) 0.5528(2) 0.0566(6) Uani d . 1 C H10A -0.0514 0.7311 0.5490 0.068 Uiso calc R 1 H H10B 0.0269 0.6662 0.5832 0.068 Uiso calc R 1 H C11 0.10252(17) 0.76175(12) 0.6433(2) 0.0570(6) Uani d . 1 C C12 0.15085(17) 0.76499(13) 0.7861(2) 0.0559(5) Uani d . 1 C N1 0.15988(13) -0.03517(10) 0.92382(18) 0.0600(5) Uani d . 1 N H1C 0.1747 -0.0809 0.9191 0.090 Uiso d R 1 H H1E 0.1773 -0.0261 1.0057 0.090 Uiso d R 1 H N2 0.06944(13) 0.04612(9) 0.65665(17) 0.0564(5) Uani d . 1 N H2C 0.0538 0.0692 0.5864 0.068 Uiso calc R 1 H H2D 0.0192 0.0272 0.6590 0.068 Uiso calc R 1 H N3 0.04692(13) 0.82251(10) 0.62528(17) 0.0597(5) Uani d . 1 N H3C 0.0705 0.8586 0.6012 0.090 Uiso d R 1 H H3D 0.0568 0.8332 0.7027 0.090 Uiso d R 1 H N4 0.20590(13) 0.70586(9) 0.84101(17) 0.0551(5) Uani d . 1 N H4C 0.2410 0.6996 0.9263 0.066 Uiso calc R 1 H H4D 0.2070 0.6733 0.7918 0.066 Uiso calc R 1 H O1 0.21904(11) 0.07173(8) 0.72488(14) 0.0581(4) Uani d . 1 O O2 0.15218(11) 0.80954(8) 0.86078(14) 0.0556(4) Uani d . 1 O loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 0.0552(12) 0.0576(13) 0.0572(13) -0.0003(11) 0.0330(11) -0.0006(11) C2 0.0573(13) 0.0591(13) 0.0574(13) -0.0005(11) 0.0327(11) -0.0015(11) C3 0.0592(13) 0.0581(14) 0.0584(13) -0.0012(11) 0.0342(12) -0.0001(11) C4 0.0606(13) 0.0555(14) 0.0584(13) 0.0019(12) 0.0343(11) 0.0008(11) C5 0.0585(13) 0.0594(14) 0.0566(13) -0.0008(12) 0.0334(11) -0.0010(12) C6 0.0580(13) 0.0552(14) 0.0590(14) -0.0001(11) 0.0339(13) -0.0009(11) C7 0.0559(12) 0.0570(14) 0.0556(12) -0.0003(11) 0.0316(11) 0.0003(11) C8 0.0593(13) 0.0567(14) 0.0562(13) 0.0015(11) 0.0347(11) 0.0008(11) C9 0.0578(13) 0.0573(14) 0.0609(12) 0.0001(11) 0.0353(11) 0.0004(11) C10 0.0548(13) 0.0586(14) 0.0533(13) -0.0010(11) 0.0297(11) -0.0016(10) C11 0.0570(13) 0.0586(14) 0.0566(13) 0.0016(11) 0.0337(11) -0.0004(11) C12 0.0545(13) 0.0556(15) 0.0575(13) 0.0004(11) 0.0325(11) -0.0005(12) N1 0.0602(11) 0.0587(12) 0.0628(11) -0.0009(10) 0.0368(9) -0.0029(10) N2 0.0566(11) 0.0560(11) 0.0554(10) -0.0002(9) 0.0319(10) 0.0010(9) N3 0.0592(11) 0.0623(12) 0.0573(11) -0.0016(10) 0.0336(9) -0.0016(10) N4 0.0552(10) 0.0546(12) 0.0559(10) -0.0003(9) 0.0326(9) -0.0013(9) O1 0.0569(9) 0.0568(10) 0.0588(9) 0.0006(8) 0.0325(8) 0.0018(8) O2 0.0568(8) 0.0543(9) 0.0554(8) 0.0011(7) 0.0324(7) 0.0000(7) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C5 C1 C2 94.32(17) yes C5 C1 H1A 116.0 ? C2 C1 H1A 116.9 ? C5 C1 H1B 108.3 ? C2 C1 H1B 110.3 ? H1A C1 H1B 110.0 ? C1 C2 C3 110.14(19) yes C1 C2 H2A 109.6 ? C3 C2 H2A 109.6 ? C1 C2 H2B 109.6 ? C3 C2 H2B 109.6 ? H2A C2 H2B 108.1 ? C4 C3 C2 104.97(18) yes C4 C3 H3A 110.8 ? C2 C3 H3A 110.8 ? C4 C3 H3B 110.8 ? C2 C3 H3B 110.8 ? H3A C3 H3B 108.8 ? C3 C4 C5 99.79(18) yes C3 C4 H4A 111.8 ? C5 C4 H4A 111.8 ? C3 C4 H4B 111.8 ? C5 C4 H4B 111.8 ? H4A C4 H4B 109.5 ? C1 C5 N1 117.3(2) yes C1 C5 C4 111.58(18) yes N1 C5 C4 104.20(17) yes C1 C5 C6 107.11(18) yes N1 C5 C6 113.62(18) yes C4 C5 C6 102.05(19) yes O1 C6 N2 104.0(2) yes O1 C6 C5 119.7(2) yes N2 C6 C5 136.3(2) yes C11 C7 C8 104.64(17) yes C11 C7 H7A 110.8 ? C8 C7 H7A 110.8 ? C11 C7 H7B 110.8 ? C8 C7 H7B 110.8 ? H7A C7 H7B 108.9 ? C9 C8 C7 106.88(17) yes C9 C8 H8A 110.3 ? C7 C8 H8A 110.3 ? C9 C8 H8B 110.3 ? C7 C8 H8B 110.3 ? H8A C8 H8B 108.6 ? C8 C9 C10 107.02(18) yes C8 C9 H9A 110.3 ? C10 C9 H9A 110.3 ? C8 C9 H9B 110.3 ? C10 C9 H9B 110.3 ? H9A C9 H9B 108.6 ? C11 C10 C9 106.47(18) yes C11 C10 H10A 110.4 ? C9 C10 H10A 110.4 ? C11 C10 H10B 110.4 ? C9 C10 H10B 110.4 ? H10A C10 H10B 108.6 ? N3 C11 C12 89.66(18) yes N3 C11 C10 97.47(18) yes C12 C11 C10 122.19(19) yes N3 C11 C7 111.65(19) yes C12 C11 C7 122.69(19) yes C10 C11 C7 107.47(17) yes O2 C12 N4 117.2(2) yes O2 C12 C11 134.7(2) yes N4 C12 C11 108.1(2) yes C5 N1 H1C 103.7 ? C5 N1 H1E 110.5 ? H1C N1 H1E 109.5 ? C6 N2 H2C 120.0 ? C6 N2 H2D 120.0 ? H2C N2 H2D 120.0 ? C11 N3 H3C 110.2 ? C11 N3 H3D 108.1 ? H3C N3 H3D 109.5 ? C12 N4 H4C 120.0 ? C12 N4 H4D 120.0 ? H4C N4 H4D 120.0 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag C1 C5 1.461(3) yes C1 C2 1.464(3) yes C1 H1A 0.9700 ? C1 H1B 0.9700 ? C2 C3 1.515(3) yes C2 H2A 0.9700 ? C2 H2B 0.9700 ? C3 C4 1.486(3) yes C3 H3A 0.9700 ? C3 H3B 0.9700 ? C4 C5 1.493(3) yes C4 H4A 0.9700 ? C4 H4B 0.9700 ? C5 N1 1.470(3) yes C5 C6 1.538(3) yes C6 O1 1.220(2) yes C6 N2 1.300(3) yes C7 C11 1.459(3) yes C7 C8 1.531(3) yes C7 H7A 0.9700 ? C7 H7B 0.9700 ? C8 C9 1.462(3) yes C8 H8A 0.9700 ? C8 H8B 0.9700 ? C9 C10 1.506(3) yes C9 H9A 0.9700 ? C9 H9B 0.9700 ? C10 C11 1.456(3) yes C10 H10A 0.9700 ? C10 H10B 0.9700 ? C11 N3 1.353(3) yes C11 C12 1.449(3) yes C12 O2 1.225(3) yes C12 N4 1.308(3) yes N1 H1C 0.8900 yes N1 H1E 0.8900 ? N2 H2C 0.8600 ? N2 H2D 0.8600 ? N3 H3C 0.8900 ? N3 H3D 0.8900 ? N4 H4C 0.8600 ? N4 H4D 0.8600 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N1 H1C O2 1_545 0.89 2.12 2.972(2) 160 yes N1 H1E O1 6_556 0.89 2.51 3.312(2) 149 yes N2 H2D N1 2_556 0.86 2.58 3.399(3) 159 yes N3 H3D O2 . 0.89 1.67 2.358(2) 132 yes N4 H4C O2 7_567 0.86 2.13 2.983(2) 171 yes N4 H4D O1 4_556 0.86 2.27 3.043(3) 149 yes C1 H1A O1 . 0.97 2.38 2.755(3) 102 yes C4 H4A O1 . 0.97 2.49 2.888(3) 105 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C2 C1 C5 C4 44.5(2) yes C5 C1 C2 C3 -36.2(3) yes C2 C1 C5 N1 -75.5(2) yes C2 C1 C5 C6 155.45(19) yes C1 C2 C3 C4 17.9(3) yes C2 C3 C4 C5 9.3(3) yes C3 C4 C5 C1 -35.3(3) yes C3 C4 C5 C6 -149.6(2) yes C3 C4 C5 N1 91.9(2) yes C4 C5 C6 O1 72.4(3) yes C4 C5 C6 N2 -106.3(3) yes C1 C5 C6 O1 -45.0(3) yes N1 C5 C6 O1 -176.1(2) yes N1 C5 C6 N2 5.2(4) yes C1 C5 C6 N2 136.3(3) yes C8 C7 C11 N3 -77.9(2) yes C11 C7 C8 C9 -19.8(2) yes C8 C7 C11 C10 27.8(2) yes C8 C7 C11 C12 177.8(2) yes C7 C8 C9 C10 4.6(3) yes C8 C9 C10 C11 12.4(3) yes C9 C10 C11 C7 -25.4(3) yes C9 C10 C11 C12 -175.6(2) yes C9 C10 C11 N3 90.1(2) yes C7 C11 C12 O2 106.8(4) yes N3 C11 C12 O2 -8.9(4) yes N3 C11 C12 N4 172.8(2) yes C10 C11 C12 N4 74.2(3) yes C7 C11 C12 N4 -71.5(3) yes C10 C11 C12 O2 -107.6(4) yes