#------------------------------------------------------------------------------ #$Date: 2013-12-28 13:58:47 +0000 (Sat, 28 Dec 2013) $ #$Revision: 91933 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/35/2203540.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2203540 loop_ _publ_author_name 'Jin-Chang Ding' 'Miao-Chang Liu' 'Hua-Yue Wu' 'Mao-Lin Hu' 'Hong-Ping Xiao' _publ_section_title ; 1-Benzyluracil ; _journal_issue 5 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o837 _journal_page_last o838 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C11 H10 N2 O2' _chemical_formula_moiety 'C11 H10 N2 O2' _chemical_formula_sum 'C11 H10 N2 O2' _chemical_formula_weight 202.21 _chemical_name_systematic ; 1-Benzyluracil ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 101.934(2) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 6.5304(4) _cell_length_b 6.9483(3) _cell_length_c 10.9214(6) _cell_measurement_reflns_used 578 _cell_measurement_temperature 298(2) _cell_measurement_theta_max 23.45 _cell_measurement_theta_min 2.45 _cell_volume 484.85(5) _computing_cell_refinement 'SAINT (Bruker, 2002)' _computing_data_collection 'SMART (Bruker, 2002)' _computing_data_reduction SAINT _computing_molecular_graphics SHELXTL _computing_publication_material SHELXTL _computing_structure_refinement SHELXTL _computing_structure_solution 'SHELXTL (Bruker, 2002)' _diffrn_ambient_temperature 298(2) _diffrn_measured_fraction_theta_full 0.995 _diffrn_measured_fraction_theta_max 0.995 _diffrn_measurement_device_type 'Bruker APEX area-detector' _diffrn_measurement_method '\f and \w scan' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.012 _diffrn_reflns_av_sigmaI/netI 0.0166 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min -8 _diffrn_reflns_limit_l_max 10 _diffrn_reflns_limit_l_min -13 _diffrn_reflns_number 2594 _diffrn_reflns_theta_full 25.19 _diffrn_reflns_theta_max 25.19 _diffrn_reflns_theta_min 1.91 _diffrn_standards_decay_% 0 _diffrn_standards_interval_time 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.098 _exptl_absorpt_correction_T_max 0.9863 _exptl_absorpt_correction_T_min 0.9647 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Bruker, 2002)' _exptl_crystal_colour Colourless _exptl_crystal_density_diffrn 1.385 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Block _exptl_crystal_F_000 212 _exptl_crystal_size_max 0.37 _exptl_crystal_size_mid 0.32 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.192 _refine_diff_density_min -0.187 _refine_ls_abs_structure_details ' ' _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.266 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 140 _refine_ls_number_reflns 1683 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 1.266 _refine_ls_R_factor_all 0.0555 _refine_ls_R_factor_gt 0.0542 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0449P)^2^+0.2061P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1252 _refine_ls_wR_factor_ref 0.1257 _reflns_number_gt 921 _reflns_number_total 1683 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file bt6427.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'P 21' _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_exptl_absorpt_correction_type' value 'Multi-scan' changed to 'multi-scan' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_exptl_absorpt_correction_type' value 'Multi-scan' changed to 'multi-scan' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2203540 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol O1 0.4747(5) 1.0781(5) 0.8282(3) 0.0568(9) Uani d . 1 O O2 0.9903(5) 0.6723(5) 1.0063(3) 0.0593(9) Uani d . 1 O N1 0.4034(5) 0.7559(6) 0.8161(3) 0.0456(9) Uani d . 1 N N2 0.7301(6) 0.8671(6) 0.9162(4) 0.0445(9) Uani d . 1 N C1 -0.0299(6) 0.7622(7) 0.5309(4) 0.0526(11) Uani d . 1 C H1 -0.1453 0.7556 0.5684 0.063 Uiso calc R 1 H C2 -0.0592(8) 0.7551(8) 0.4033(5) 0.0635(14) Uani d . 1 C H2 -0.1938 0.7434 0.3551 0.076 Uiso calc R 1 H C3 0.1079(9) 0.7650(9) 0.3459(4) 0.0751(16) Uani d . 1 C H3 0.0878 0.7610 0.2591 0.090 Uiso calc R 1 H C4 0.3051(9) 0.7811(12) 0.4182(5) 0.0817(19) Uani d . 1 C H4 0.4199 0.7871 0.3802 0.098 Uiso calc R 1 H C5 0.3348(7) 0.7884(10) 0.5465(4) 0.0669(15) Uani d . 1 C H5 0.4698 0.7999 0.5942 0.080 Uiso calc R 1 H C6 0.1686(6) 0.7790(6) 0.6050(4) 0.0415(9) Uani d . 1 C C7 0.1892(6) 0.7882(8) 0.7447(4) 0.0504(11) Uani d . 1 C H7A 0.1421 0.9135 0.7666 0.060 Uiso calc R 1 H H7B 0.0976 0.6923 0.7694 0.060 Uiso calc R 1 H C8 0.5309(7) 0.9147(7) 0.8510(4) 0.0433(10) Uani d . 1 C C9 0.8115(7) 0.6871(6) 0.9469(4) 0.0410(9) Uani d . 1 C C10 0.6700(7) 0.5317(7) 0.9024(4) 0.0476(11) Uani d . 1 C H10 0.7127 0.4045 0.9169 0.057 Uiso calc R 1 H C11 0.4775(7) 0.5722(7) 0.8404(4) 0.0466(11) Uani d . 1 C H11 0.3880 0.4703 0.8118 0.056 Uiso calc R 1 H H1N 0.816(7) 0.960(7) 0.934(4) 0.052(14) Uiso d . 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.054(2) 0.051(2) 0.058(2) 0.0088(16) -0.0062(15) 0.0073(16) O2 0.0415(15) 0.0549(19) 0.0692(18) 0.0087(16) -0.0168(13) 0.0028(18) N1 0.0380(18) 0.058(2) 0.0369(17) 0.0010(18) -0.0003(13) -0.0029(18) N2 0.0374(19) 0.042(2) 0.047(2) -0.0009(16) -0.0056(15) -0.0007(16) C1 0.043(2) 0.051(3) 0.057(3) -0.001(2) -0.0045(18) 0.001(2) C2 0.066(3) 0.053(3) 0.057(3) 0.003(2) -0.021(2) -0.005(3) C3 0.104(4) 0.077(4) 0.037(2) 0.003(4) -0.002(3) -0.005(3) C4 0.078(3) 0.116(6) 0.057(3) -0.003(4) 0.027(3) -0.001(4) C5 0.046(2) 0.106(5) 0.047(2) -0.002(3) 0.0072(19) -0.003(3) C6 0.041(2) 0.040(2) 0.041(2) -0.0023(19) 0.0024(15) -0.0036(19) C7 0.035(2) 0.068(3) 0.047(2) -0.002(2) 0.0058(16) 0.000(2) C8 0.045(2) 0.047(3) 0.035(2) 0.001(2) 0.0018(18) 0.001(2) C9 0.048(2) 0.042(2) 0.0320(19) 0.001(2) 0.0057(17) 0.0006(19) C10 0.059(3) 0.044(3) 0.038(2) 0.004(2) 0.0074(19) 0.0000(19) C11 0.052(3) 0.049(3) 0.037(2) -0.009(2) 0.0064(19) -0.003(2) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C11 N1 C8 121.3(3) C11 N1 C7 120.2(4) C8 N1 C7 118.4(4) C9 N2 C8 128.1(4) C9 N2 H1N 116(3) C8 N2 H1N 116(3) C2 C1 C6 121.0(4) C2 C1 H1 119.5 C6 C1 H1 119.5 C1 C2 C3 120.6(4) C1 C2 H2 119.7 C3 C2 H2 119.7 C2 C3 C4 119.0(4) C2 C3 H3 120.5 C4 C3 H3 120.5 C3 C4 C5 120.6(5) C3 C4 H4 119.7 C5 C4 H4 119.7 C6 C5 C4 121.0(4) C6 C5 H5 119.5 C4 C5 H5 119.5 C5 C6 C1 117.9(4) C5 C6 C7 123.9(3) C1 C6 C7 118.2(3) N1 C7 C6 114.0(3) N1 C7 H7A 108.7 C6 C7 H7A 108.7 N1 C7 H7B 108.7 C6 C7 H7B 108.7 H7A C7 H7B 107.6 O1 C8 N2 123.0(4) O1 C8 N1 123.6(4) N2 C8 N1 113.4(4) O2 C9 N2 119.2(4) O2 C9 C10 126.5(4) N2 C9 C10 114.3(4) C11 C10 C9 119.1(4) C11 C10 H10 120.4 C9 C10 H10 120.4 C10 C11 N1 123.7(4) C10 C11 H11 118.2 N1 C11 H11 118.2 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C8 1.203(5) O2 C9 1.217(5) N1 C11 1.371(6) N1 C8 1.387(5) N1 C7 1.471(5) N2 C9 1.373(6) N2 C8 1.387(5) N2 H1N 0.85(5) C1 C2 1.368(7) C1 C6 1.384(5) C1 H1 0.9300 C2 C3 1.368(7) C2 H2 0.9300 C3 C4 1.369(7) C3 H3 0.9300 C4 C5 1.375(7) C4 H4 0.9300 C5 C6 1.370(6) C5 H5 0.9300 C6 C7 1.505(5) C7 H7A 0.9700 C7 H7B 0.9700 C9 C10 1.439(6) C10 C11 1.330(6) C10 H10 0.9300 C11 H11 0.9300 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N2 H1N O2 2_757 0.85(5) 1.97(5) 2.813(5) 174(5) _cod_database_fobs_code 2203540 _journal_paper_doi 10.1107/S1600536804009146