#------------------------------------------------------------------------------ #$Date: 2011-01-02 20:00:31 +0000 (Sun, 02 Jan 2011) $ #$Revision: 5310 $ #$URL: svn://www.crystallography.net/cod/cif/2/2203602.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2203602 loop_ _publ_author_name 'Han, Lei' 'Xu, Ying' 'Lou, Ben-Yong' 'Hong, Mao-Chun' _publ_section_title ; Benzyltrimethylammonium tris(pyrimidine-2-thiolato-\k^2^N,S)nickel(II) ; _journal_issue 5 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first m566 _journal_page_last m567 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac '(C10 H16 N) [Ni (C4 H3 N2 S)3]' _chemical_formula_moiety 'C10 H16 N 1+, C12 H9 N6 Ni S3 1-' _chemical_formula_sum 'C22 H25 N7 Ni S3' _chemical_formula_weight 542.38 _chemical_name_common 'C22 H25 N7 Ni S3' _chemical_name_systematic ; ; _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method CrystalClearVersion1.3 _cell_angle_alpha 90.205(4) _cell_angle_beta 101.633(5) _cell_angle_gamma 100.889(6) _cell_formula_units_Z 2 _cell_length_a 7.5730(8) _cell_length_b 12.4729(14) _cell_length_c 13.5236(13) _cell_measurement_reflns_used 3472 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 28.28 _cell_measurement_theta_min 1.54 _cell_volume 1227.5(2) _computing_cell_refinement CrystalClear _computing_data_collection 'CrystalClear (Rigaku, 2000)' _computing_data_reduction CrystalClear _computing_molecular_graphics SHELXL97 _computing_publication_material SHELXL97 _computing_structure_refinement SHELXL97 _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.984 _diffrn_measured_fraction_theta_max 0.984 _diffrn_measurement_device_type 'Mercury CCD' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0165 _diffrn_reflns_av_sigmaI/netI 0.0296 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 16 _diffrn_reflns_limit_k_min -15 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 10173 _diffrn_reflns_theta_full 28.28 _diffrn_reflns_theta_max 28.28 _diffrn_reflns_theta_min 1.54 _diffrn_standards_decay_% 0 _exptl_absorpt_coefficient_mu 1.071 _exptl_absorpt_correction_T_max 0.807 _exptl_absorpt_correction_T_min 0.746 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details 'CrystalClear (Rigaku, 2000)' _exptl_crystal_colour green _exptl_crystal_density_diffrn 1.467 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 564 _exptl_crystal_size_max 0.20 _exptl_crystal_size_mid 0.20 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.662 _refine_diff_density_min -0.485 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.043 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 293 _refine_ls_number_reflns 5984 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.043 _refine_ls_R_factor_all 0.0359 _refine_ls_R_factor_gt 0.0310 _refine_ls_shift/su_max 0.002 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0287P)^2^+0.6691P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0677 _refine_ls_wR_factor_ref 0.0700 _reflns_number_gt 5426 _reflns_number_total 5984 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file hb6031.cif _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_absorpt_correction_type' value 'Multi-scan' changed to 'multi-scan' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2203602 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol Ni1 0.55178(3) 0.750189(16) 0.720911(16) 0.01366(6) Uani d . 1 Ni S1 0.22450(6) 0.66261(3) 0.68577(3) 0.01794(9) Uani d . 1 S S2 0.67683(6) 0.64298(3) 0.86262(3) 0.01655(9) Uani d . 1 S S3 0.55564(6) 0.92518(3) 0.81706(3) 0.02025(10) Uani d . 1 S N1 0.41420(19) 0.79524(11) 0.58400(10) 0.0159(3) Uani d . 1 N N2 0.0934(2) 0.74802(12) 0.50896(11) 0.0220(3) Uani d . 1 N N3 0.65082(19) 0.62154(11) 0.67038(10) 0.0152(3) Uani d . 1 N N4 0.7986(2) 0.49042(12) 0.76515(11) 0.0187(3) Uani d . 1 N N5 0.79084(19) 0.86165(11) 0.72782(11) 0.0163(3) Uani d . 1 N N6 0.8974(2) 1.03614(13) 0.81414(12) 0.0259(3) Uiso d . 1 N N7 0.77060(19) 1.26891(11) 0.99198(10) 0.0159(3) Uani d . 1 N C1 0.2393(2) 0.74043(13) 0.58264(12) 0.0160(3) Uani d . 1 C C2 0.1281(3) 0.81372(15) 0.43428(14) 0.0247(4) Uani d . 1 C H2A 0.0281 0.8208 0.3812 0.030 Uiso calc R 1 H C3 0.3008(3) 0.87196(15) 0.42979(14) 0.0241(4) Uani d . 1 C H3A 0.3205 0.9180 0.3757 0.029 Uiso calc R 1 H C4 0.4430(3) 0.85963(14) 0.50811(13) 0.0202(3) Uani d . 1 C H4A 0.5640 0.8979 0.5079 0.024 Uiso calc R 1 H C5 0.7144(2) 0.57666(13) 0.75904(12) 0.0148(3) Uani d . 1 C C6 0.8196(2) 0.44934(14) 0.67784(14) 0.0209(4) Uani d . 1 C H6A 0.8782 0.3882 0.6799 0.025 Uiso calc R 1 H C7 0.7612(2) 0.49029(14) 0.58474(13) 0.0206(4) Uani d . 1 C H7A 0.7788 0.4593 0.5240 0.025 Uiso calc R 1 H C8 0.6758(2) 0.57883(14) 0.58491(13) 0.0184(3) Uani d . 1 C H8A 0.6339 0.6100 0.5226 0.022 Uiso calc R 1 H C9 0.7679(2) 0.94579(13) 0.78562(13) 0.0173(3) Uani d . 1 C C10 0.9469(2) 0.86963(15) 0.69466(14) 0.0215(4) Uani d . 1 C H10A 0.9632 0.8121 0.6533 0.026 Uiso calc R 1 H C11 1.0855(3) 0.96107(17) 0.71992(16) 0.0285(4) Uani d . 1 C H11A 1.1969 0.9682 0.6963 0.034 Uiso calc R 1 H C12 1.0541(3) 1.04107(16) 0.78077(16) 0.0291(4) Uani d . 1 C H12A 1.1489 1.1035 0.8004 0.035 Uiso calc R 1 H C13 0.7778(3) 1.37935(15) 1.03821(14) 0.0236(4) Uani d . 1 C H13A 0.9058 1.4131 1.0670 0.035 Uiso calc R 1 H H13B 0.7067 1.3717 1.0917 0.035 Uiso calc R 1 H H13C 0.7255 1.4255 0.9862 0.035 Uiso calc R 1 H C14 0.8424(3) 1.19674(16) 1.07283(14) 0.0261(4) Uani d . 1 C H14A 0.9694 1.2294 1.1047 0.039 Uiso calc R 1 H H14B 0.8387 1.1246 1.0427 0.039 Uiso calc R 1 H H14C 0.7659 1.1891 1.1238 0.039 Uiso calc R 1 H C15 0.8899(2) 1.28093(15) 0.91508(13) 0.0207(4) Uani d . 1 C H15A 1.0150 1.3170 0.9472 0.031 Uiso calc R 1 H H15B 0.8404 1.3251 0.8603 0.031 Uiso calc R 1 H H15C 0.8921 1.2085 0.8875 0.031 Uiso calc R 1 H C16 0.5735(2) 1.21341(14) 0.94570(13) 0.0179(3) Uani d . 1 C H16A 0.5738 1.1378 0.9234 0.021 Uiso calc R 1 H H16B 0.5000 1.2088 0.9989 0.021 Uiso calc R 1 H C17 0.4798(2) 1.26935(13) 0.85734(12) 0.0159(3) Uani d . 1 C C18 0.3853(2) 1.35207(14) 0.87108(13) 0.0196(3) Uani d . 1 C H18A 0.3848 1.3768 0.9375 0.023 Uiso calc R 1 H C19 0.2921(2) 1.39864(15) 0.78868(14) 0.0213(4) Uani d . 1 C H19A 0.2292 1.4555 0.7989 0.026 Uiso calc R 1 H C20 0.2902(2) 1.36252(15) 0.69149(14) 0.0221(4) Uani d . 1 C H20A 0.2263 1.3945 0.6350 0.027 Uiso calc R 1 H C21 0.3820(3) 1.27934(15) 0.67693(13) 0.0229(4) Uani d . 1 C H21A 0.3802 1.2540 0.6104 0.027 Uiso calc R 1 H C22 0.4764(2) 1.23317(14) 0.75928(13) 0.0194(3) Uani d . 1 C H22A 0.5392 1.1764 0.7487 0.023 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Ni1 0.01325(11) 0.01303(10) 0.01471(11) 0.00287(8) 0.00259(8) 0.00043(7) S1 0.0162(2) 0.0180(2) 0.0184(2) 0.00125(16) 0.00240(16) 0.00297(15) S2 0.0174(2) 0.0193(2) 0.01275(19) 0.00365(16) 0.00248(15) 0.00004(14) S3 0.0196(2) 0.0175(2) 0.0254(2) 0.00370(16) 0.00867(18) -0.00287(16) N1 0.0170(7) 0.0146(7) 0.0164(7) 0.0040(5) 0.0032(5) -0.0005(5) N2 0.0203(8) 0.0235(8) 0.0201(7) 0.0051(6) -0.0015(6) 0.0006(6) N3 0.0165(7) 0.0140(6) 0.0147(7) 0.0024(5) 0.0026(5) 0.0014(5) N4 0.0186(7) 0.0168(7) 0.0204(7) 0.0052(6) 0.0018(6) 0.0014(5) N5 0.0150(7) 0.0175(7) 0.0174(7) 0.0053(6) 0.0036(6) 0.0024(5) N6 0.0240(8) 0.0185(7) 0.0299(8) -0.0036(6) -0.0001(7) -0.0005(6) N7 0.0141(7) 0.0187(7) 0.0141(7) 0.0022(5) 0.0017(5) 0.0033(5) C1 0.0178(8) 0.0142(7) 0.0163(8) 0.0047(6) 0.0024(6) -0.0029(6) C2 0.0297(10) 0.0243(9) 0.0177(9) 0.0084(8) -0.0040(7) -0.0002(7) C3 0.0348(11) 0.0212(9) 0.0180(9) 0.0091(8) 0.0057(8) 0.0047(7) C4 0.0252(9) 0.0166(8) 0.0197(8) 0.0046(7) 0.0063(7) 0.0017(6) C5 0.0118(8) 0.0142(7) 0.0166(8) 0.0004(6) 0.0010(6) 0.0006(6) C6 0.0185(9) 0.0162(8) 0.0283(9) 0.0060(7) 0.0032(7) -0.0024(7) C7 0.0218(9) 0.0196(8) 0.0206(9) 0.0030(7) 0.0060(7) -0.0057(6) C8 0.0198(8) 0.0184(8) 0.0154(8) 0.0012(7) 0.0024(6) -0.0002(6) C9 0.0171(8) 0.0158(8) 0.0175(8) 0.0029(6) 0.0006(6) 0.0028(6) C10 0.0164(8) 0.0265(9) 0.0242(9) 0.0090(7) 0.0054(7) 0.0089(7) C11 0.0146(9) 0.0346(11) 0.0371(11) 0.0038(8) 0.0072(8) 0.0153(9) C12 0.0178(9) 0.0256(10) 0.0365(11) -0.0060(7) -0.0021(8) 0.0082(8) C13 0.0218(9) 0.0238(9) 0.0228(9) 0.0026(7) 0.0011(7) -0.0061(7) C14 0.0199(9) 0.0317(10) 0.0244(9) 0.0043(8) -0.0004(7) 0.0132(8) C15 0.0182(9) 0.0260(9) 0.0198(9) 0.0057(7) 0.0074(7) 0.0033(7) C16 0.0147(8) 0.0186(8) 0.0176(8) -0.0009(6) 0.0009(6) 0.0033(6) C17 0.0128(8) 0.0167(8) 0.0156(8) -0.0014(6) 0.0012(6) 0.0019(6) C18 0.0192(9) 0.0235(9) 0.0152(8) 0.0031(7) 0.0028(7) -0.0023(6) C19 0.0194(9) 0.0226(9) 0.0222(9) 0.0068(7) 0.0027(7) -0.0003(7) C20 0.0199(9) 0.0264(9) 0.0188(8) 0.0045(7) 0.0011(7) 0.0044(7) C21 0.0268(10) 0.0274(9) 0.0147(8) 0.0050(8) 0.0048(7) -0.0015(7) C22 0.0188(8) 0.0193(8) 0.0198(8) 0.0041(7) 0.0033(7) -0.0016(6) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Ni Ni 0.3393 1.1124 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag N5 Ni1 N3 94.69(6) yes N5 Ni1 N1 96.66(6) yes N3 Ni1 N1 99.25(5) yes N5 Ni1 S1 162.19(4) yes N3 Ni1 S1 97.38(4) yes N1 Ni1 S1 68.52(4) yes N5 Ni1 S2 95.47(4) yes N3 Ni1 S2 68.50(4) yes N1 Ni1 S2 163.43(4) yes S1 Ni1 S2 101.113(16) yes N5 Ni1 S3 67.63(4) yes N3 Ni1 S3 158.31(4) yes N1 Ni1 S3 95.37(4) yes S1 Ni1 S3 102.858(17) yes S2 Ni1 S3 99.663(18) yes C1 S1 Ni1 77.83(6) ? C5 S2 Ni1 77.37(6) ? C9 S3 Ni1 76.34(6) ? C4 N1 C1 118.37(15) ? C4 N1 Ni1 140.66(13) ? C1 N1 Ni1 100.86(10) ? C2 N2 C1 115.99(16) ? C8 N3 C5 118.31(14) ? C8 N3 Ni1 140.16(12) ? C5 N3 Ni1 101.40(10) ? C6 N4 C5 116.22(15) ? C10 N5 C9 119.05(15) ? C10 N5 Ni1 138.16(13) ? C9 N5 Ni1 102.77(10) ? C12 N6 C9 116.08(17) ? C13 N7 C15 108.94(13) ? C13 N7 C14 109.30(14) ? C15 N7 C14 108.97(13) ? C13 N7 C16 111.31(13) ? C15 N7 C16 111.59(13) ? C14 N7 C16 106.67(13) ? N2 C1 N1 123.78(15) ? N2 C1 S1 123.47(13) ? N1 C1 S1 112.73(12) ? N2 C2 C3 123.91(17) ? N2 C2 H2A 118.0 ? C3 C2 H2A 118.0 ? C4 C3 C2 116.53(16) ? C4 C3 H3A 121.7 ? C2 C3 H3A 121.7 ? N1 C4 C3 121.41(17) ? N1 C4 H4A 119.3 ? C3 C4 H4A 119.3 ? N4 C5 N3 123.68(15) ? N4 C5 S2 123.63(13) ? N3 C5 S2 112.69(12) ? N4 C6 C7 124.00(16) ? N4 C6 H6A 118.0 ? C7 C6 H6A 118.0 ? C6 C7 C8 116.22(16) ? C6 C7 H7A 121.9 ? C8 C7 H7A 121.9 ? N3 C8 C7 121.57(16) ? N3 C8 H8A 119.2 ? C7 C8 H8A 119.2 ? N6 C9 N5 123.44(15) ? N6 C9 S3 123.45(13) ? N5 C9 S3 113.10(12) ? N5 C10 C11 120.66(18) ? N5 C10 H10A 119.7 ? C11 C10 H10A 119.7 ? C12 C11 C10 116.84(17) ? C12 C11 H11A 121.6 ? C10 C11 H11A 121.6 ? N6 C12 C11 123.89(18) ? N6 C12 H12A 118.1 ? C11 C12 H12A 118.1 ? N7 C13 H13A 109.5 ? N7 C13 H13B 109.5 ? H13A C13 H13B 109.5 ? N7 C13 H13C 109.5 ? H13A C13 H13C 109.5 ? H13B C13 H13C 109.5 ? N7 C14 H14A 109.5 ? N7 C14 H14B 109.5 ? H14A C14 H14B 109.5 ? N7 C14 H14C 109.5 ? H14A C14 H14C 109.5 ? H14B C14 H14C 109.5 ? N7 C15 H15A 109.5 ? N7 C15 H15B 109.5 ? H15A C15 H15B 109.5 ? N7 C15 H15C 109.5 ? H15A C15 H15C 109.5 ? H15B C15 H15C 109.5 ? C17 C16 N7 115.15(13) ? C17 C16 H16A 108.5 ? N7 C16 H16A 108.5 ? C17 C16 H16B 108.5 ? N7 C16 H16B 108.5 ? H16A C16 H16B 107.5 ? C22 C17 C18 118.77(15) ? C22 C17 C16 119.61(15) ? C18 C17 C16 121.47(15) ? C19 C18 C17 120.60(16) ? C19 C18 H18A 119.7 ? C17 C18 H18A 119.7 ? C20 C19 C18 120.20(17) ? C20 C19 H19A 119.9 ? C18 C19 H19A 119.9 ? C19 C20 C21 119.68(17) ? C19 C20 H20A 120.2 ? C21 C20 H20A 120.2 ? C22 C21 C20 120.18(16) ? C22 C21 H21A 119.9 ? C20 C21 H21A 119.9 ? C21 C22 C17 120.54(16) ? C21 C22 H22A 119.7 ? C17 C22 H22A 119.7 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag Ni1 N5 2.0492(14) yes Ni1 N3 2.0635(14) yes Ni1 N1 2.0689(14) yes Ni1 S1 2.4617(5) yes Ni1 S2 2.4743(5) yes Ni1 S3 2.5290(5) yes S1 C1 1.7122(17) ? S2 C5 1.7232(17) ? S3 C9 1.7179(17) ? N1 C4 1.333(2) ? N1 C1 1.367(2) ? N2 C2 1.339(2) ? N2 C1 1.349(2) ? N3 C8 1.333(2) ? N3 C5 1.363(2) ? N4 C6 1.336(2) ? N4 C5 1.345(2) ? N5 C10 1.333(2) ? N5 C9 1.364(2) ? N6 C12 1.343(3) ? N6 C9 1.344(2) ? N7 C13 1.498(2) ? N7 C15 1.500(2) ? N7 C14 1.501(2) ? N7 C16 1.526(2) ? C2 C3 1.384(3) ? C2 H2A 0.9500 ? C3 C4 1.382(3) ? C3 H3A 0.9500 ? C4 H4A 0.9500 ? C6 C7 1.381(3) ? C6 H6A 0.9500 ? C7 C8 1.381(2) ? C7 H7A 0.9500 ? C8 H8A 0.9500 ? C10 C11 1.386(3) ? C10 H10A 0.9500 ? C11 C12 1.375(3) ? C11 H11A 0.9500 ? C12 H12A 0.9500 ? C13 H13A 0.9800 ? C13 H13B 0.9800 ? C13 H13C 0.9800 ? C14 H14A 0.9800 ? C14 H14B 0.9800 ? C14 H14C 0.9800 ? C15 H15A 0.9800 ? C15 H15B 0.9800 ? C15 H15C 0.9800 ? C16 C17 1.506(2) ? C16 H16A 0.9900 ? C16 H16B 0.9900 ? C17 C22 1.393(2) ? C17 C18 1.394(2) ? C18 C19 1.386(2) ? C18 H18A 0.9500 ? C19 C20 1.384(3) ? C19 H19A 0.9500 ? C20 C21 1.387(3) ? C20 H20A 0.9500 ? C21 C22 1.386(2) ? C21 H21A 0.9500 ? C22 H22A 0.9500 ?