#------------------------------------------------------------------------------ #$Date: 2008-02-08 10:23:56 +0000 (Fri, 08 Feb 2008) $ #$Revision: 101 $ #$URL: svn://www.crystallography.net/cod/cif/2/2203639.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_2203639 loop_ _publ_author_name 'Sevim T\"urktekin' 'Mehmet Akkurt' 'Nihat \,Sireci' 'Hasan K\"u\,c\"ukbay' 'Orhan B\"uy\"ukg\"ung\"or' _publ_section_title ; 1-(2-Piperidinoethyl)-1H-benzimidazole ; _journal_issue 5 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first o817 _journal_page_last o819 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C14 H19 N3' _chemical_formula_moiety 'C14 H19 N3' _chemical_formula_sum 'C14 H19 N3' _chemical_formula_weight 229.32 _chemical_name_systematic ; 1-(2-piperidinoethyl)benzimidazole ; _symmetry_cell_setting Monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 21/n' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 90 _cell_angle_beta 102.178(10) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 6.3741(8) _cell_length_b 19.042(2) _cell_length_c 11.1476(14) _cell_measurement_reflns_used 3947 _cell_measurement_temperature 293 _cell_measurement_theta_max 24.58 _cell_measurement_theta_min 2.14 _cell_volume 1322.6(3) _computing_cell_refinement X-AREA _computing_data_collection 'X-AREA (Stoe & Cie, 2002)' _computing_data_reduction 'X-RED32 (Stoe & Cie, 2002)' _computing_molecular_graphics 'ORTEP-3 (Farrugia, 1997)' _computing_publication_material 'WinGX (Farrugia, 1999)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SIR97 (Altomare et al., 1999)' _diffrn_ambient_temperature 293 _diffrn_detector_area_resol_mean 6.67 _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device '2-circle goniometer' _diffrn_measurement_device_type 'Stoe IPDS-II' _diffrn_measurement_method \w _diffrn_radiation_monochromator 'plane graphite' _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0497 _diffrn_reflns_av_sigmaI/netI 0.0553 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min -7 _diffrn_reflns_limit_k_max 23 _diffrn_reflns_limit_k_min -23 _diffrn_reflns_limit_l_max 13 _diffrn_reflns_limit_l_min -13 _diffrn_reflns_number 9349 _diffrn_reflns_reduction_process ' ?' _diffrn_reflns_theta_full 25.99 _diffrn_reflns_theta_max 25.99 _diffrn_reflns_theta_min 2.14 _diffrn_standards_decay_% <2 _exptl_absorpt_coefficient_mu 0.070 _exptl_absorpt_correction_T_max 0.9809 _exptl_absorpt_correction_T_min 0.9630 _exptl_absorpt_correction_type integration _exptl_absorpt_process_details '(XRED32; Stoe & Cie, 2002)' _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.152 _exptl_crystal_density_method 'Not Measured' _exptl_crystal_description block _exptl_crystal_F_000 496 _exptl_crystal_size_max 0.42 _exptl_crystal_size_mid 0.33 _exptl_crystal_size_min 0.24 _refine_diff_density_max 0.103 _refine_diff_density_min -0.080 _refine_ls_extinction_coef 0.037(3) _refine_ls_extinction_expression FC^*^=KFC[1+0.001XFC^2^\L^3^/SIN(2\Q)]^-1/4^ _refine_ls_extinction_method SHELXL97 _refine_ls_goodness_of_fit_ref 0.803 _refine_ls_hydrogen_treatment noref _refine_ls_matrix_type full _refine_ls_number_parameters 155 _refine_ls_number_reflns 2596 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.803 _refine_ls_R_factor_all 0.1098 _refine_ls_R_factor_gt 0.0405 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0515P)^2^] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0876 _refine_ls_wR_factor_ref 0.1045 _reflns_number_gt 1132 _reflns_number_total 2596 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file na6316.cif loop_ _symmetry_equiv_pos_as_xyz x,y,z 1/2-x,1/2+y,1/2-z -x,-y,-z 1/2+x,1/2-y,1/2+z loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol N1 0.5213(3) 0.20139(10) 0.7011(2) 0.0991(8) Uani . . 1.000 N N2 0.8079(2) 0.20143(8) 0.61480(15) 0.0725(6) Uani . . 1.000 N N3 0.7442(2) 0.11540(8) 0.39174(13) 0.0720(6) Uani . . 1.000 N C1 0.8709(3) 0.16764(9) 0.72534(18) 0.0661(7) Uani . . 1.000 C C2 1.0610(3) 0.13715(11) 0.78226(18) 0.0797(8) Uani . . 1.000 C C3 1.0675(4) 0.10635(12) 0.8943(2) 0.0935(9) Uani . . 1.000 C C4 0.8900(4) 0.10689(12) 0.9485(2) 0.0950(10) Uani . . 1.000 C C5 0.7029(4) 0.13780(12) 0.8924(2) 0.0930(10) Uani . . 1.000 C C6 0.6908(3) 0.16862(10) 0.7779(2) 0.0755(8) Uani . . 1.000 C C7 0.5997(3) 0.21922(11) 0.6064(2) 0.0920(9) Uani . . 1.000 C C8 0.9332(3) 0.20995(11) 0.52046(18) 0.0855(8) Uani . . 1.000 C C9 0.9522(3) 0.14236(12) 0.45334(18) 0.0882(9) Uani . . 1.000 C C10 0.6650(4) 0.14823(12) 0.27386(19) 0.0987(10) Uani . . 1.000 C C11 0.4419(4) 0.12558(14) 0.2182(2) 0.1124(11) Uani . . 1.000 C C12 0.4257(4) 0.04738(15) 0.2065(2) 0.1230(11) Uani . . 1.000 C C13 0.5193(5) 0.01417(14) 0.3281(2) 0.1381(14) Uani . . 1.000 C C14 0.7407(4) 0.04024(13) 0.3791(2) 0.1162(11) Uani . . 1.000 C H2 1.18030 0.13740 0.74650 0.0960 Uiso calc R 1.000 H H3 1.19320 0.08470 0.93480 0.1120 Uiso calc R 1.000 H H4 0.89960 0.08570 1.02460 0.1140 Uiso calc R 1.000 H H5 0.58540 0.13830 0.92960 0.1120 Uiso calc R 1.000 H H7 0.51900 0.24230 0.53860 0.1100 Uiso calc R 1.000 H H8A 1.07560 0.22660 0.55820 0.1030 Uiso calc R 1.000 H H8B 0.86570 0.24520 0.46210 0.1030 Uiso calc R 1.000 H H9A 1.03970 0.15030 0.39320 0.1060 Uiso calc R 1.000 H H9B 1.02390 0.10760 0.51130 0.1060 Uiso calc R 1.000 H H10A 0.75880 0.13620 0.21880 0.1180 Uiso calc R 1.000 H H10B 0.66800 0.19880 0.28400 0.1180 Uiso calc R 1.000 H H11A 0.39770 0.14670 0.13760 0.1350 Uiso calc R 1.000 H H11B 0.34540 0.14200 0.26880 0.1350 Uiso calc R 1.000 H H12A 0.50300 0.03140 0.14530 0.1470 Uiso calc R 1.000 H H12B 0.27650 0.03370 0.18010 0.1470 Uiso calc R 1.000 H H13A 0.42830 0.02460 0.38550 0.1660 Uiso calc R 1.000 H H13B 0.52290 -0.03640 0.31830 0.1660 Uiso calc R 1.000 H H14A 0.79430 0.01890 0.45870 0.1390 Uiso calc R 1.000 H H14B 0.83470 0.02640 0.32520 0.1390 Uiso calc R 1.000 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 N1 0.0729(11) 0.0975(14) 0.1348(16) 0.0094(10) 0.0397(12) 0.0040(12) N2 0.0587(9) 0.0724(11) 0.0872(11) -0.0055(8) 0.0175(8) -0.0073(9) N3 0.0814(11) 0.0688(11) 0.0633(9) 0.0070(9) 0.0096(8) 0.0058(8) C1 0.0576(11) 0.0648(12) 0.0762(12) -0.0085(9) 0.0150(10) -0.0148(10) C2 0.0625(13) 0.1007(16) 0.0766(14) -0.0050(11) 0.0161(10) -0.0135(12) C3 0.0789(14) 0.1176(19) 0.0792(14) -0.0053(12) 0.0058(12) -0.0101(13) C4 0.0992(17) 0.1098(19) 0.0792(14) -0.0149(14) 0.0262(14) -0.0125(12) C5 0.0894(16) 0.0978(17) 0.1030(17) -0.0148(14) 0.0459(14) -0.0229(14) C6 0.0644(13) 0.0701(13) 0.0971(15) -0.0067(11) 0.0286(12) -0.0162(11) C7 0.0698(14) 0.0787(15) 0.1242(19) 0.0058(12) 0.0132(13) 0.0056(13) C8 0.0739(13) 0.0927(16) 0.0905(14) -0.0149(11) 0.0187(11) 0.0038(12) C9 0.0748(13) 0.1112(18) 0.0818(14) 0.0083(12) 0.0240(11) -0.0016(12) C10 0.123(2) 0.0841(16) 0.0821(14) -0.0036(13) 0.0059(13) 0.0149(12) C11 0.128(2) 0.100(2) 0.0911(16) 0.0035(16) -0.0177(14) 0.0067(13) C12 0.144(2) 0.098(2) 0.1082(19) -0.0128(17) -0.0158(16) -0.0013(15) C13 0.170(3) 0.0879(19) 0.132(2) -0.0327(18) -0.0233(19) 0.0279(16) C14 0.136(2) 0.0816(18) 0.1157(18) 0.0140(16) -0.0078(16) 0.0131(14) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag N1 C6 1.378(3) yes N1 C7 1.305(3) yes N2 C1 1.373(3) yes N2 C7 1.354(2) yes N2 C8 1.458(2) yes N3 C9 1.452(2) yes N3 C10 1.447(3) yes N3 C14 1.438(3) yes C1 C2 1.372(3) no C1 C6 1.395(3) no C2 C3 1.373(3) no C3 C4 1.391(4) no C4 C5 1.358(3) no C5 C6 1.392(3) no C8 C9 1.506(3) no C10 C11 1.490(4) no C11 C12 1.497(4) no C12 C13 1.501(3) no C13 C14 1.491(4) no C2 H2 0.9301 no C3 H3 0.9291 no C4 H4 0.9297 no C5 H5 0.9295 no C7 H7 0.9300 no C8 H8A 0.9697 no C8 H8B 0.9700 no C9 H9A 0.9701 no C9 H9B 0.9695 no C10 H10A 0.9703 no C10 H10B 0.9693 no C11 H11A 0.9704 no C11 H11B 0.9699 no C12 H12A 0.9709 no C12 H12B 0.9700 no C13 H13A 0.9705 no C13 H13B 0.9699 no C14 H14A 0.9702 no C14 H14B 0.9702 no loop_ _geom_contact_atom_site_label_1 _geom_contact_atom_site_label_2 _geom_contact_distance _geom_contact_site_symmetry_2 _geom_contact_publ_flag N1 N2 2.237(2) . no N2 N1 2.237(2) . no N2 N3 2.934(2) . no N3 N2 2.934(2) . no N3 C7 3.378(3) . no N1 H2 2.6324 1_455 no N2 H11A 2.9486 4_555 no C2 C9 3.586(3) . no C7 N3 3.378(3) . no C9 C2 3.586(3) . no C1 H9B 2.9888 . no C2 H8A 3.0408 . no C2 H9B 3.0323 . no C4 H7 3.0957 4_555 no C6 H13B 2.9543 3_656 no C8 H10B 2.8233 . no C8 H11A 3.0549 4_555 no C8 H2 3.0107 . no C10 H8B 2.8839 . no H2 N1 2.6324 1_655 no H2 C8 3.0107 . no H7 H8B 2.5316 . no H7 C4 3.0957 4_454 no H8A C2 3.0408 . no H8B C10 2.8839 . no H8B H7 2.5316 . no H8B H10B 2.2924 . no H9A H10A 2.3641 . no H9A H10B 2.5945 . no H9B C1 2.9888 . no H9B C2 3.0323 . no H9B H14A 2.2308 . no H10A H9A 2.3641 . no H10A H12A 2.5978 . no H10A H14B 2.4021 . no H10B C8 2.8233 . no H10B H8B 2.2924 . no H10B H9A 2.5945 . no H11A N2 2.9486 4_454 no H11A C8 3.0549 4_454 no H11B H13A 2.5844 . no H12A H10A 2.5978 . no H12A H14B 2.5908 . no H13A H11B 2.5844 . no H13A H14A 2.5991 3_656 no H13B C6 2.9543 3_656 no H14A H9B 2.2308 . no H14A H13A 2.5991 3_656 no H14B H10A 2.4021 . no H14B H12A 2.5908 . no loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C6 N1 C7 103.69(18) yes C1 N2 C7 106.04(16) yes C1 N2 C8 126.78(15) yes C7 N2 C8 126.92(17) yes C9 N3 C10 112.68(16) yes C9 N3 C14 113.08(16) yes C10 N3 C14 110.24(16) yes N2 C1 C2 132.51(18) yes N2 C1 C6 105.07(16) yes C2 C1 C6 122.42(18) no C1 C2 C3 117.11(19) no C2 C3 C4 121.4(2) no C3 C4 C5 121.3(2) no C4 C5 C6 118.6(2) no N1 C6 C1 110.61(19) yes N1 C6 C5 130.2(2) yes C1 C6 C5 119.22(19) no N1 C7 N2 114.60(19) yes N2 C8 C9 112.15(16) yes N3 C9 C8 112.08(16) yes N3 C10 C11 111.88(19) yes C10 C11 C12 111.5(2) no C11 C12 C13 109.5(2) no C12 C13 C14 111.6(2) no N3 C14 C13 111.3(2) yes C1 C2 H2 121.44 no C3 C2 H2 121.45 no C2 C3 H3 119.29 no C4 C3 H3 119.31 no C3 C4 H4 119.36 no C5 C4 H4 119.38 no C4 C5 H5 120.72 no C6 C5 H5 120.71 no N1 C7 H7 122.68 no N2 C7 H7 122.72 no N2 C8 H8A 109.18 no N2 C8 H8B 109.14 no C9 C8 H8A 109.20 no C9 C8 H8B 109.20 no H8A C8 H8B 107.87 no N3 C9 H9A 109.20 no N3 C9 H9B 109.20 no C8 C9 H9A 109.16 no C8 C9 H9B 109.16 no H9A C9 H9B 107.94 no N3 C10 H10A 109.21 no N3 C10 H10B 109.20 no C11 C10 H10A 109.24 no C11 C10 H10B 109.25 no H10A C10 H10B 107.98 no C10 C11 H11A 109.31 no C10 C11 H11B 109.34 no C12 C11 H11A 109.30 no C12 C11 H11B 109.32 no H11A C11 H11B 108.00 no C11 C12 H12A 109.71 no C11 C12 H12B 109.81 no C13 C12 H12A 109.80 no C13 C12 H12B 109.78 no H12A C12 H12B 108.24 no C12 C13 H13A 109.29 no C12 C13 H13B 109.33 no C14 C13 H13A 109.25 no C14 C13 H13B 109.30 no H13A C13 H13B 108.00 no N3 C14 H14A 109.39 no N3 C14 H14B 109.40 no C13 C14 H14A 109.37 no C13 C14 H14B 109.39 no H14A C14 H14B 107.96 no loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C7 N1 C6 C1 -0.1(2) no C7 N1 C6 C5 -179.2(2) no C6 N1 C7 N2 -0.5(2) no C8 N2 C1 C6 -175.28(17) no C8 N2 C7 N1 175.30(18) no C1 N2 C8 C9 72.8(2) yes C7 N2 C8 C9 -100.4(2) yes C7 N2 C1 C6 -0.9(2) no C7 N2 C1 C2 178.8(2) no C8 N2 C1 C2 4.4(3) no C1 N2 C7 N1 1.0(2) no C14 N3 C9 C8 -151.69(17) yes C10 N3 C9 C8 82.5(2) yes C10 N3 C14 C13 -59.1(2) no C9 N3 C10 C11 -173.87(18) no C14 N3 C10 C11 58.8(2) no C9 N3 C14 C13 173.74(17) no C2 C1 C6 C5 0.1(3) no C6 C1 C2 C3 0.7(3) no N2 C1 C6 C5 179.89(18) no N2 C1 C6 N1 0.7(2) no C2 C1 C6 N1 -179.09(18) no N2 C1 C2 C3 -179.0(2) no C1 C2 C3 C4 -0.9(3) no C2 C3 C4 C5 0.2(4) no C3 C4 C5 C6 0.7(3) no C4 C5 C6 C1 -0.8(3) no C4 C5 C6 N1 178.2(2) no N2 C8 C9 N3 60.4(2) yes N3 C10 C11 C12 -56.0(2) no C10 C11 C12 C13 52.1(3) no C11 C12 C13 C14 -52.8(3) no C12 C13 C14 N3 57.2(3) no