#------------------------------------------------------------------------------ #$Date: 2017-10-13 07:09:21 +0100 (Fri, 13 Oct 2017) $ #$Revision: 201973 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/36/2203652.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2203652 loop_ _publ_author_name Vasu 'K. A. Nirmala' 'Deepak Chopra' 'S. Mohan' J.Saravanan _publ_section_title ; Methyl 2-amino-4,5,6,7-tetrahydro-1-benzothiophene-3-carboxylate ; _journal_issue 5 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o758 _journal_page_last o759 _journal_paper_doi 10.1107/S1600536804008219 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C10 H13 N O2 S' _chemical_formula_moiety 'C10 H13 N O2 S' _chemical_formula_sum 'C10 H13 N O2 S' _chemical_formula_weight 211.28 _chemical_name_systematic ; Methyl 2-amino-4,5,6,7-tetrahydro-1-benzothiophene-3-carboxylate ; _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-C 2yc' _symmetry_space_group_name_H-M 'C 1 2/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 90 _cell_angle_beta 121.018(3) _cell_angle_gamma 90 _cell_formula_units_Z 8 _cell_length_a 16.915(3) _cell_length_b 14.003(3) _cell_length_c 10.142(2) _cell_measurement_reflns_used 450 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 25.6 _cell_measurement_theta_min 1.6 _cell_volume 2058.7(7) _computing_cell_refinement SMART _computing_data_collection 'SMART (Bruker, 1998)' _computing_data_reduction 'SAINT (Bruker, 1998)' _computing_molecular_graphics 'ORTEP-3 for Windows (Farrugia, 1997) and CAMERON (Watkin et al., 1993)' _computing_publication_material 'PLATON (Spek, 2003)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SIR92 (Altomare et al., 1993)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.929 _diffrn_measurement_device_type 'Bruker SMART CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0535 _diffrn_reflns_av_sigmaI/netI 0.0481 _diffrn_reflns_limit_h_max 21 _diffrn_reflns_limit_h_min -21 _diffrn_reflns_limit_k_max 17 _diffrn_reflns_limit_k_min -18 _diffrn_reflns_limit_l_max 12 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 8343 _diffrn_reflns_reduction_process ; ? ; _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 27.75 _diffrn_reflns_theta_min 2.02 _exptl_absorpt_coefficient_mu 0.287 _exptl_absorpt_correction_T_max 0.9796 _exptl_absorpt_correction_T_min 0.9175 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 1997)' _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.363 _exptl_crystal_density_method 'Not Measured' _exptl_crystal_description needle _exptl_crystal_F_000 896 _exptl_crystal_size_max 0.17 _exptl_crystal_size_mid 0.16 _exptl_crystal_size_min 0.07 _refine_diff_density_max 0.541 _refine_diff_density_min -0.198 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.176 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 136 _refine_ls_number_reflns 1808 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.176 _refine_ls_R_factor_all 0.1047 _refine_ls_R_factor_gt 0.0777 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0929P)^2^+1.4124P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1781 _refine_ls_wR_factor_ref 0.1897 _reflns_number_gt 1337 _reflns_number_total 1808 _reflns_threshold_expression I>2\s(I) _cod_data_source_file ob6362.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 2058.9(7) _cod_original_sg_symbol_H-M 'C 2/c' _cod_database_code 2203652 _cod_database_fobs_code 2203652 loop_ _symmetry_equiv_pos_as_xyz x,y,z -x,y,1/2-z -x,-y,-z x,-y,1/2+z 1/2+x,1/2+y,z 1/2-x,1/2+y,1/2-z 1/2-x,1/2-y,-z 1/2+x,1/2-y,1/2+z loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol S1 0.12241(11) 0.14418(10) 0.73340(15) 0.0531(5) Uani d . 1 S O1 0.1125(3) 0.0950(2) 0.2818(4) 0.0521(10) Uani d . 1 O O2 0.1195(3) 0.2537(2) 0.2733(4) 0.0519(10) Uani d . 1 O N1 0.1123(4) 0.0153(3) 0.5311(6) 0.0569(13) Uani d . 1 N C1 0.1184(3) 0.1116(3) 0.5663(5) 0.0392(11) Uani d . 1 C C2 0.1211(3) 0.1864(3) 0.4848(5) 0.0378(10) Uani d . 1 C C3 0.1274(3) 0.2763(3) 0.5620(5) 0.0364(10) Uani d . 1 C C4 0.1283(4) 0.2652(4) 0.6944(6) 0.0467(12) Uani d . 1 C C5 0.1309(5) 0.3431(4) 0.7986(6) 0.0599(15) Uani d . 1 C C6 0.1030(5) 0.4371(4) 0.7076(8) 0.077(2) Uani d . 1 C C7 0.1517(5) 0.4506(4) 0.6225(7) 0.0632(16) Uani d . 1 C C8 0.1302(4) 0.3738(3) 0.5040(6) 0.0475(12) Uani d . 1 C C9 0.1173(3) 0.1719(3) 0.3400(5) 0.0363(10) Uani d . 1 C C10 0.1191(4) 0.2470(4) 0.1333(5) 0.0519(14) Uani d . 1 C H1N 0.107(4) -0.025(4) 0.587(6) 0.052(15) Uiso d . 1 H H2N 0.107(5) -0.002(5) 0.438(8) 0.09(2) Uiso d . 1 H H5A 0.1925 0.3486 0.8881 0.072 Uiso calc R 1 H H5B 0.0885 0.3285 0.8334 0.072 Uiso calc R 1 H H6A 0.0370 0.4370 0.6353 0.092 Uiso calc R 1 H H6B 0.1172 0.4901 0.7779 0.092 Uiso calc R 1 H H7A 0.2177 0.4512 0.6954 0.076 Uiso calc R 1 H H7B 0.1348 0.5122 0.5716 0.076 Uiso calc R 1 H H8A 0.0710 0.3874 0.4126 0.057 Uiso calc R 1 H H8B 0.1767 0.3749 0.4751 0.057 Uiso calc R 1 H H10A 0.1714 0.2104 0.1497 0.078 Uiso calc R 1 H H10B 0.1223 0.3099 0.0987 0.078 Uiso calc R 1 H H10C 0.0634 0.2163 0.0569 0.078 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 0.0810(10) 0.0497(8) 0.0390(7) 0.0044(7) 0.0383(7) 0.0084(6) O1 0.086(3) 0.0352(19) 0.050(2) 0.0019(17) 0.046(2) -0.0040(15) O2 0.086(3) 0.0401(19) 0.0428(19) -0.0004(18) 0.043(2) 0.0035(15) N1 0.099(4) 0.032(2) 0.051(3) 0.001(2) 0.046(3) 0.008(2) C1 0.045(3) 0.047(3) 0.030(2) 0.010(2) 0.022(2) 0.0087(19) C2 0.046(3) 0.031(2) 0.040(2) 0.0020(19) 0.025(2) 0.0000(18) C3 0.043(3) 0.031(2) 0.037(2) 0.0034(18) 0.022(2) 0.0007(18) C4 0.054(3) 0.045(3) 0.040(3) 0.005(2) 0.024(2) 0.000(2) C5 0.080(4) 0.067(4) 0.042(3) 0.004(3) 0.038(3) -0.005(3) C6 0.117(6) 0.050(4) 0.079(4) 0.009(3) 0.061(4) -0.021(3) C7 0.094(5) 0.037(3) 0.058(3) -0.004(3) 0.039(3) -0.008(2) C8 0.059(3) 0.043(3) 0.047(3) 0.001(2) 0.032(3) -0.002(2) C9 0.045(3) 0.036(2) 0.033(2) 0.003(2) 0.024(2) 0.0005(18) C10 0.074(4) 0.055(3) 0.044(3) 0.001(3) 0.042(3) 0.006(2) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C1 S1 C4 90.7(2) C9 O2 C10 117.5(4) C1 N1 H1N 120(4) C1 N1 H2N 118(4) H1N N1 H2N 121(6) C1 C2 C9 120.9(4) C1 C2 C3 111.0(4) C9 C2 C3 128.2(4) C4 C3 C2 113.4(4) C4 C3 C8 120.8(4) C2 C3 C8 125.8(4) C2 C1 N1 128.3(4) C2 C1 S1 113.6(4) N1 C1 S1 118.1(3) C3 C4 C5 126.9(5) C3 C4 S1 111.4(4) C5 C4 S1 121.7(4) C3 C8 C7 112.3(4) C3 C8 H8A 109.1 C7 C8 H8A 109.1 C3 C8 H8B 109.1 C7 C8 H8B 109.1 H8A C8 H8B 107.9 O1 C9 O2 121.7(4) O1 C9 C2 125.1(4) O2 C9 C2 113.1(4) O2 C10 H10A 109.5 O2 C10 H10B 109.5 H10A C10 H10B 109.5 O2 C10 H10C 109.5 H10A C10 H10C 109.5 H10B C10 H10C 109.5 C4 C5 C6 108.1(4) C4 C5 H5A 110.1 C6 C5 H5A 110.1 C4 C5 H5B 110.1 C6 C5 H5B 110.1 H5A C5 H5B 108.4 C6 C7 C8 113.3(5) C6 C7 H7A 108.9 C8 C7 H7A 108.9 C6 C7 H7B 108.9 C8 C7 H7B 108.9 H7A C7 H7B 107.7 C7 C6 C5 111.6(5) C7 C6 H6A 109.3 C5 C6 H6A 109.3 C7 C6 H6B 109.3 C5 C6 H6B 109.3 H6A C6 H6B 108.0 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance S1 C1 1.723(4) S1 C4 1.755(5) O2 C9 1.342(5) O2 C10 1.420(5) O1 C9 1.210(6) N1 C1 1.385(7) N1 H1N 0.84(6) N1 H2N 0.94(6) C2 C1 1.349(6) C2 C9 1.451(6) C2 C3 1.457(6) C3 C4 1.343(6) C3 C8 1.498(6) C4 C5 1.504(7) C8 C7 1.510(7) C8 H8A 0.9700 C8 H8B 0.9700 C10 H10A 0.9600 C10 H10B 0.9600 C10 H10C 0.9600 C5 C6 1.536(8) C5 H5A 0.9700 C5 H5B 0.9700 C7 C6 1.480(9) C7 H7A 0.9700 C7 H7B 0.9700 C6 H6A 0.9700 C6 H6B 0.9700 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N1 H1N O1 4_555 0.84(5) 2.17(5) 2.972(5) 161(4) yes N1 H2N O1 . 0.94(6) 2.14(6) 2.766(6) 123(4) yes loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 ChemSpider 2037316