#------------------------------------------------------------------------------ #$Date: 2017-10-13 07:09:21 +0100 (Fri, 13 Oct 2017) $ #$Revision: 201973 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/36/2203657.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2203657 loop_ _publ_author_name 'Gao-Feng Shi' 'Run-Hua Lu' 'Yun-Shang Yang' 'Chun-lei Li' 'Ai-Mei Yang' 'Li-Xiang Cai' _publ_section_title ; 1-Hydroxy-2,3,4,7-tetramethoxyxanthone fromSwertia Chirayita ; _journal_issue 5 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o878 _journal_page_last o880 _journal_paper_doi 10.1107/S1600536804009171 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C17 H16 O7' _chemical_formula_moiety 'C17 H16 O7' _chemical_formula_sum 'C17 H16 O7' _chemical_formula_weight 332.30 _chemical_name_common 1-hydroxy-2,3,4,7-tetramethoxyxanthone _chemical_name_systematic ; 1-hydroxy-2,3,4,7-tetramethoxy-9H-xanthen-9-one ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 90.00 _cell_angle_beta 95.18(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 7.1510(10) _cell_length_b 13.229(3) _cell_length_c 16.044(3) _cell_measurement_reflns_used 25 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 20 _cell_measurement_theta_min 10 _cell_volume 1511.6(5) _computing_cell_refinement 'CAD-4 SDP/VAX' _computing_data_collection 'CAD-4 SDP/VAX(Enraf-Nonius, 1989)' _computing_data_reduction 'MolEN/PC (Fair, 1990)' _computing_molecular_graphics 'SHELXTL/PC (Siemens, 1994)' _computing_publication_material SHELXTL/PC _computing_structure_refinement 'SHELXL-7 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.999 _diffrn_measurement_device_type 'Enraf--Nonius CAD-4' _diffrn_measurement_method \w/2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0627 _diffrn_reflns_av_sigmaI/netI 0.1329 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min 0 _diffrn_reflns_limit_k_max 15 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 18 _diffrn_reflns_limit_l_min -19 _diffrn_reflns_number 2885 _diffrn_reflns_theta_full 24.98 _diffrn_reflns_theta_max 24.98 _diffrn_reflns_theta_min 2.00 _diffrn_standards_decay_% 0.2 _diffrn_standards_interval_time 60 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.115 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.460 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 696 _exptl_crystal_size_max 0.4 _exptl_crystal_size_mid 0.3 _exptl_crystal_size_min 0.3 _refine_diff_density_max 0.218 _refine_diff_density_min -0.281 _refine_ls_extinction_coef 0.0024(9) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 0.978 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 218 _refine_ls_number_reflns 2661 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.978 _refine_ls_R_factor_all 0.2285 _refine_ls_R_factor_gt 0.0520 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0547P)^2^] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1161 _refine_ls_wR_factor_ref 0.1652 _reflns_number_gt 923 _reflns_number_total 2661 _reflns_threshold_expression I>2\s(I) _cod_data_source_file su6088.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_sg_symbol_H-M 'P 21/n' _cod_database_code 2203657 _cod_database_fobs_code 2203657 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol O1 0.0973(5) 0.3180(2) 0.3868(2) 0.0671(10) Uani d . 1 O O2 0.2618(4) 0.0110(2) 0.61283(17) 0.0476(8) Uani d . 1 O O3 0.2537(4) -0.0606(2) 0.36408(19) 0.0591(10) Uani d . 1 O O4 0.3341(4) -0.2452(2) 0.40539(18) 0.0582(10) Uani d . 1 O H4A 0.3098 -0.1945 0.3737 0.080 Uiso d R 1 H O5 0.3204(4) -0.1269(3) 0.73401(17) 0.0569(9) Uani d . 1 O O6 0.4087(5) -0.3157(3) 0.69958(19) 0.0676(10) Uani d . 1 O O7 0.4167(4) -0.3822(2) 0.52787(19) 0.0590(10) Uani d . 1 O C1 0.0824(7) 0.3002(4) 0.2991(3) 0.0684(16) Uani d . 1 C H1A 0.0520 0.3621 0.2697 0.080 Uiso d R 1 H H1B 0.1998 0.2748 0.2832 0.080 Uiso d R 1 H H1C -0.0146 0.2513 0.2852 0.080 Uiso d R 1 H C2 0.1707(6) 0.1404(4) 0.4101(3) 0.0485(12) Uani d . 1 C H2A 0.1629 0.1260 0.3513 0.080 Uiso d R 1 H C3 0.1403(6) 0.2365(4) 0.4374(3) 0.0514(13) Uani d . 1 C C4 0.1527(6) 0.2565(4) 0.5234(3) 0.0531(13) Uani d . 1 C H4B 0.1328 0.3242 0.5422 0.080 Uiso d R 1 H C5 0.1933(6) 0.1814(4) 0.5808(3) 0.0491(13) Uani d . 1 C H5A 0.1998 0.1951 0.6398 0.080 Uiso d R 1 H C6 0.2235(6) 0.0837(4) 0.5528(3) 0.0435(12) Uani d . 1 C C7 0.2144(6) 0.0618(4) 0.4675(3) 0.0407(11) Uani d . 1 C C8 0.2543(6) -0.0392(4) 0.4398(3) 0.0456(12) Uani d . 1 C C9 0.2942(6) -0.1130(3) 0.5051(3) 0.0412(11) Uani d . 1 C C10 0.3331(6) -0.2140(4) 0.4859(3) 0.0448(12) Uani d . 1 C C11 0.3702(6) -0.2854(4) 0.5489(3) 0.0458(12) Uani d . 1 C C12 0.3722(6) -0.2552(4) 0.6320(3) 0.0453(12) Uani d . 1 C C13 0.3326(6) -0.1551(4) 0.6519(3) 0.0418(12) Uani d . 1 C C14 0.2970(6) -0.0857(3) 0.5888(3) 0.0424(11) Uani d . 1 C C15 0.4946(7) -0.0997(4) 0.7787(3) 0.0722(17) Uani d . 1 C H15A 0.4756 -0.0803 0.8350 0.080 Uiso d R 1 H H15B 0.5771 -0.1571 0.7798 0.080 Uiso d R 1 H H15C 0.5496 -0.0444 0.7509 0.080 Uiso d R 1 H C16 0.4285(9) -0.4203(4) 0.6965(3) 0.0858(19) Uani d . 1 C H16A 0.4525 -0.4461 0.7524 0.080 Uiso d R 1 H H16B 0.3154 -0.4500 0.6705 0.080 Uiso d R 1 H H16C 0.5317 -0.4368 0.6647 0.080 Uiso d R 1 H C17 0.2627(7) -0.4419(4) 0.4919(3) 0.0788(18) Uani d . 1 C H17A 0.3063 -0.5084 0.4793 0.080 Uiso d R 1 H H17B 0.1702 -0.4469 0.5315 0.080 Uiso d R 1 H H17C 0.2078 -0.4106 0.4415 0.080 Uiso d R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.080(2) 0.057(2) 0.065(2) 0.007(2) 0.0123(19) 0.011(2) O2 0.052(2) 0.052(2) 0.0386(18) 0.0056(17) 0.0046(15) -0.0039(17) O3 0.078(3) 0.058(2) 0.0406(19) 0.0020(19) 0.0054(18) 0.0011(17) O4 0.072(2) 0.060(2) 0.042(2) 0.0013(18) 0.0019(17) -0.0050(17) O5 0.061(2) 0.075(2) 0.0353(19) 0.0071(19) 0.0057(16) -0.0022(17) O6 0.087(3) 0.061(3) 0.054(2) 0.017(2) 0.0031(19) 0.011(2) O7 0.057(2) 0.056(2) 0.063(2) 0.0091(19) -0.0004(18) -0.0084(19) C1 0.075(4) 0.069(4) 0.063(4) 0.014(3) 0.018(3) 0.017(3) C2 0.047(3) 0.051(3) 0.047(3) -0.002(3) 0.007(2) 0.008(3) C3 0.044(3) 0.049(4) 0.062(4) 0.004(2) 0.010(3) 0.013(3) C4 0.054(3) 0.048(3) 0.058(3) 0.000(3) 0.013(3) 0.001(3) C5 0.046(3) 0.049(3) 0.052(3) 0.000(3) 0.007(2) -0.005(3) C6 0.036(3) 0.047(3) 0.047(3) -0.004(2) 0.002(2) -0.001(3) C7 0.035(3) 0.050(3) 0.038(3) -0.002(2) 0.008(2) -0.001(2) C8 0.044(3) 0.056(4) 0.037(3) -0.013(3) 0.009(2) -0.009(3) C9 0.038(3) 0.046(3) 0.040(3) -0.004(2) 0.007(2) 0.003(2) C10 0.035(3) 0.060(4) 0.039(3) 0.002(2) 0.000(2) -0.010(3) C11 0.039(3) 0.040(3) 0.057(3) 0.004(2) -0.002(2) -0.003(3) C12 0.037(3) 0.058(4) 0.040(3) 0.008(2) -0.001(2) 0.005(3) C13 0.040(3) 0.054(3) 0.032(3) 0.006(2) 0.006(2) 0.002(2) C14 0.034(3) 0.047(3) 0.045(3) 0.001(2) 0.001(2) -0.003(3) C15 0.081(4) 0.074(4) 0.058(3) 0.007(3) -0.008(3) -0.009(3) C16 0.130(5) 0.062(4) 0.063(4) -0.010(4) -0.004(4) 0.012(3) C17 0.085(4) 0.054(4) 0.094(4) 0.011(3) -0.014(4) -0.020(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C3 O1 C1 116.8(4) yes C14 O2 C6 119.3(3) yes C10 O4 H4A 108.2 ? C13 O5 C15 114.9(3) yes C12 O6 C16 124.9(4) yes C11 O7 C17 114.8(4) yes O1 C1 H1A 109.8 ? O1 C1 H1B 109.3 ? H1A C1 H1B 109.5 ? O1 C1 H1C 109.3 yes H1A C1 H1C 109.5 ? H1B C1 H1C 109.5 ? C3 C2 C7 120.7(5) yes C3 C2 H2A 120.2 ? C7 C2 H2A 119.1 ? C2 C3 O1 125.2(5) yes C2 C3 C4 119.6(5) yes O1 C3 C4 115.2(5) yes C5 C4 C3 121.1(5) yes C5 C4 H4B 119.7 ? C3 C4 H4B 119.2 ? C4 C5 C6 119.1(5) yes C4 C5 H5A 121.0 ? C6 C5 H5A 119.9 ? O2 C6 C5 116.8(4) yes O2 C6 C7 122.1(4) yes C5 C6 C7 121.0(4) yes C6 C7 C2 118.5(4) yes C6 C7 C8 120.1(4) yes C2 C7 C8 121.4(4) yes O3 C8 C9 122.5(4) yes O3 C8 C7 121.8(4) yes C9 C8 C7 115.7(4) yes C14 C9 C10 118.3(4) yes C14 C9 C8 120.7(4) yes C10 C9 C8 121.0(4) yes O4 C10 C11 117.9(4) yes O4 C10 C9 121.1(4) yes C11 C10 C9 121.0(4) yes O7 C11 C12 121.5(4) yes O7 C11 C10 119.3(4) yes C12 C11 C10 119.1(4) yes O6 C12 C11 125.7(5) yes O6 C12 C13 113.9(4) yes C11 C12 C13 120.5(4) yes C14 C13 O5 119.9(4) yes C14 C13 C12 119.5(4) yes O5 C13 C12 120.5(4) yes O2 C14 C13 116.4(4) yes O2 C14 C9 122.0(4) yes C13 C14 C9 121.6(4) yes O5 C15 H15A 110.4 ? O5 C15 H15B 108.5 ? H15A C15 H15B 109.5 ? O5 C15 H15C 109.5 ? H15A C15 H15C 109.5 ? H15B C15 H15C 109.5 ? O6 C16 H16A 109.3 ? O6 C16 H16B 109.8 ? H16A C16 H16B 109.5 ? O6 C16 H16C 109.3 ? H16A C16 H16C 109.5 ? H16B C16 H16C 109.5 ? O7 C17 H17A 109.7 ? O7 C17 H17B 108.7 ? H17A C17 H17B 109.5 ? O7 C17 H17C 110.0 ? H17A C17 H17C 109.5 ? H17B C17 H17C 109.5 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag O1 C3 1.368(5) yes O1 C1 1.421(5) yes O2 C14 1.365(5) yes O2 C6 1.372(5) yes O3 C8 1.247(5) yes O4 C10 1.357(5) yes O4 H4A 0.8499 ? O5 C13 1.379(5) yes O5 C15 1.426(5) yes O6 C12 1.354(5) yes O6 C16 1.392(5) yes O7 C11 1.373(5) yes O7 C17 1.434(5) yes C1 H1A 0.9598 ? C1 H1B 0.9600 ? C1 H1C 0.9600 ? C2 C3 1.368(6) yes C2 C7 1.406(6) yes C2 H2A 0.9602 ? C3 C4 1.400(6) yes C4 C5 1.368(6) yes C4 H4B 0.9599 ? C5 C6 1.391(6) yes C5 H5A 0.9602 ? C6 C7 1.394(5) yes C7 C8 1.444(6) yes C8 C9 1.442(6) yes C9 C14 1.389(5) yes C9 C10 1.404(6) yes C10 C11 1.391(6) yes C11 C12 1.389(6) yes C12 C13 1.397(6) yes C13 C14 1.375(6) yes C15 H15A 0.9601 ? C15 H15B 0.9600 ? C15 H15C 0.9599 ? C16 H16A 0.9600 ? C16 H16B 0.9600 ? C16 H16C 0.9599 ? C17 H17A 0.9601 ? C17 H17B 0.9600 ? C17 H17C 0.9601 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O4 H4A O3 . 0.85 1.82 2.582(4) 148 yes C16 H16C O7 . 0.96 2.39 2.746(6) 102 ? C17 H17A O7 3_646 0.96 2.46 3.302(6) 146 yes C17 H17C O4 . 0.96 2.46 3.014(6) 117 ? loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C7 C2 C3 O1 179.9(4) C7 C2 C3 C4 0.0(7) C1 O1 C3 C2 0.4(7) C1 O1 C3 C4 -179.6(4) C2 C3 C4 C5 -0.6(7) O1 C3 C4 C5 179.5(4) C3 C4 C5 C6 0.3(7) C14 O2 C6 C5 -178.5(4) C14 O2 C6 C7 1.7(6) C4 C5 C6 O2 -179.3(4) C4 C5 C6 C7 0.5(6) O2 C6 C7 C2 178.8(4) C5 C6 C7 C2 -1.1(6) O2 C6 C7 C8 -2.9(6) C5 C6 C7 C8 177.3(4) C3 C2 C7 C6 0.8(6) C3 C2 C7 C8 -177.5(4) C6 C7 C8 O3 -177.5(4) C2 C7 C8 O3 0.8(7) C6 C7 C8 C9 2.6(6) C2 C7 C8 C9 -179.1(4) O3 C8 C9 C14 178.7(4) C7 C8 C9 C14 -1.3(6) O3 C8 C9 C10 -0.6(7) C7 C8 C9 C10 179.3(4) C14 C9 C10 O4 -179.4(4) C8 C9 C10 O4 0.0(6) C14 C9 C10 C11 1.1(6) C8 C9 C10 C11 -179.5(4) C17 O7 C11 C12 110.1(5) C17 O7 C11 C10 -74.5(5) O4 C10 C11 O7 3.7(6) C9 C10 C11 O7 -176.8(4) O4 C10 C11 C12 179.2(4) C9 C10 C11 C12 -1.3(7) C16 O6 C12 C11 -8.0(8) C16 O6 C12 C13 171.4(5) O7 C11 C12 O6 -3.6(7) C10 C11 C12 O6 -179.0(4) O7 C11 C12 C13 177.1(4) C10 C11 C12 C13 1.7(7) C15 O5 C13 C14 -96.4(5) C15 O5 C13 C12 86.7(5) O6 C12 C13 C14 178.7(4) C11 C12 C13 C14 -1.9(7) O6 C12 C13 O5 -4.4(6) C11 C12 C13 O5 175.0(4) C6 O2 C14 C13 -179.4(4) C6 O2 C14 C9 -0.4(6) O5 C13 C14 O2 3.9(6) C12 C13 C14 O2 -179.2(4) O5 C13 C14 C9 -175.2(4) C12 C13 C14 C9 1.8(7) C10 C9 C14 O2 179.6(4) C8 C9 C14 O2 0.3(6) C10 C9 C14 C13 -1.4(6) C8 C9 C14 C13 179.2(4) loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 ChemSpider 4476956