#------------------------------------------------------------------------------ #$Date: 2016-02-20 03:06:23 +0000 (Sat, 20 Feb 2016) $ #$Revision: 176774 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/37/2203701.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2203701 loop_ _publ_author_name 'You, Zhong-Lu' 'Chen, Bo' 'Zhu, Hai-Liang' 'Liu, Wei-Sheng' _publ_section_title ;Aqua[2-(pyridin-2-ylmethyliminomethyl)phenolato-\k^3^N,N',O]copper(II) nitrate monohydrate ; _journal_issue 6 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first m884 _journal_page_last m886 _journal_paper_doi 10.1107/S160053680401284X _journal_volume 60 _journal_year 2004 _chemical_formula_iupac '[Cu (C13 H11 N2 O) (H2 O)] (N O3) , H2 O' _chemical_formula_moiety '[C13 H13 Cu N2 O2]+ , [N O3] - , H2 O' _chemical_formula_sum 'C13 H15 Cu N3 O6' _chemical_formula_weight 372.82 _chemical_name_systematic ; Aqua[2-(pyridin-2-ylmethyliminomethyl)phenolato-\k^3^N,N',O]copper(II) nitrate monohydrate ; _space_group_IT_number 2 _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 71.25(3) _cell_angle_beta 86.18(3) _cell_angle_gamma 86.88(3) _cell_formula_units_Z 2 _cell_length_a 7.777(2) _cell_length_b 8.993(2) _cell_length_c 11.389(2) _cell_measurement_reflns_used 3171 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 26.75 _cell_measurement_theta_min 2.393 _cell_volume 752.1(3) _computing_cell_refinement SMART _computing_data_collection 'SMART (Siemens, 1996)' _computing_data_reduction 'SHELXTL (Sheldrick, 1997a)' _computing_molecular_graphics SHELXTL _computing_publication_material SHELXTL _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997b)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997b)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.978 _diffrn_measured_fraction_theta_max 0.978 _diffrn_measurement_device_type 'Bruker SMART CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0215 _diffrn_reflns_av_sigmaI/netI 0.0323 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -14 _diffrn_reflns_number 5940 _diffrn_reflns_theta_full 26.49 _diffrn_reflns_theta_max 26.49 _diffrn_reflns_theta_min 1.89 _diffrn_standards_decay_% 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 1.487 _exptl_absorpt_correction_T_max 0.8077 _exptl_absorpt_correction_T_min 0.6896 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Blessing, 1995)' _exptl_crystal_colour blue _exptl_crystal_density_diffrn 1.646 _exptl_crystal_density_meas ? _exptl_crystal_density_method . _exptl_crystal_description block _exptl_crystal_F_000 382 _exptl_crystal_size_max 0.27 _exptl_crystal_size_mid 0.23 _exptl_crystal_size_min 0.15 _refine_diff_density_max 0.615 _refine_diff_density_min -0.253 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.178 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 220 _refine_ls_number_reflns 3044 _refine_ls_number_restraints 6 _refine_ls_restrained_S_all 1.177 _refine_ls_R_factor_all 0.0550 _refine_ls_R_factor_gt 0.0506 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0630P)^2^+0.1843P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1214 _refine_ls_wR_factor_ref 0.1244 _reflns_number_gt 2816 _reflns_number_total 3044 _reflns_threshold_expression I>2\s(I) _cod_data_source_file ac6102.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 752.2(3) _cod_original_sg_symbol_H-M P-1 _cod_database_code 2203701 _cod_database_fobs_code 2203701 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol Cu1 0.34402(5) 0.40957(4) 0.38261(3) 0.04207(17) Uani d . 1 Cu O1 0.3809(3) 0.2648(3) 0.5416(2) 0.0529(6) Uani d . 1 O O2 0.4878(3) 0.2717(3) 0.3081(2) 0.0508(6) Uani d D 1 O O3 0.1005(4) 0.2444(3) 0.3417(3) 0.0723(8) Uani d . 1 O O4 -0.0157(4) 0.0773(4) 0.2751(3) 0.0809(9) Uani d . 1 O O5 0.2487(4) 0.1337(3) 0.2236(3) 0.0679(7) Uani d . 1 O O6 0.3001(4) 0.9474(3) 0.5528(3) 0.0642(7) Uani d D 1 O N1 0.2915(4) 0.5678(3) 0.2199(3) 0.0472(6) Uani d . 1 N N2 0.2358(3) 0.5673(3) 0.4470(3) 0.0423(6) Uani d . 1 N N3 0.1106(4) 0.1523(3) 0.2800(3) 0.0524(7) Uani d . 1 N C1 0.2550(4) 0.4206(4) 0.6645(3) 0.0450(7) Uani d . 1 C C2 0.2138(5) 0.4290(5) 0.7844(3) 0.0577(9) Uani d . 1 C H2 0.1557 0.5185 0.7929 0.069 Uiso calc R 1 H C3 0.2562(5) 0.3103(5) 0.8884(4) 0.0662(11) Uani d . 1 C H3 0.2265 0.3177 0.9669 0.079 Uiso calc R 1 H C4 0.3442(5) 0.1789(5) 0.8751(4) 0.0637(10) Uani d . 1 C H4 0.3762 0.0984 0.9457 0.076 Uiso calc R 1 H C5 0.3859(5) 0.1637(4) 0.7594(4) 0.0607(10) Uani d . 1 C H5 0.4443 0.0732 0.7534 0.073 Uiso calc R 1 H C6 0.3408(4) 0.2837(4) 0.6512(3) 0.0461(7) Uani d . 1 C C7 0.2085(4) 0.5539(4) 0.5621(3) 0.0448(7) Uani d . 1 C H7 0.1534 0.6387 0.5806 0.054 Uiso calc R 1 H C8 0.1839(5) 0.7159(3) 0.3541(3) 0.0488(8) Uani d . 1 C H8A 0.2506 0.8004 0.3609 0.059 Uiso calc R 1 H H8B 0.0629 0.7402 0.3687 0.059 Uiso calc R 1 H C9 0.2133(4) 0.7019(3) 0.2268(3) 0.0437(7) Uani d . 1 C C10 0.1646(5) 0.8202(4) 0.1215(4) 0.0567(9) Uani d . 1 C H10 0.1129 0.9131 0.1281 0.068 Uiso calc R 1 H C11 0.1926(5) 0.8006(4) 0.0079(4) 0.0634(10) Uani d . 1 C H11 0.1578 0.8782 -0.0635 0.076 Uiso calc R 1 H C12 0.2733(6) 0.6634(5) 0.0011(4) 0.0663(10) Uani d . 1 C H12 0.2951 0.6479 -0.0755 0.080 Uiso calc R 1 H C13 0.3212(5) 0.5505(4) 0.1069(4) 0.0597(9) Uani d . 1 C H13 0.3761 0.4585 0.1010 0.072 Uiso calc R 1 H H2A 0.414(4) 0.219(4) 0.280(4) 0.080 Uiso d D 1 H H6B 0.200(3) 0.933(4) 0.598(4) 0.080 Uiso d D 1 H H2B 0.555(5) 0.204(3) 0.362(3) 0.080 Uiso d D 1 H H6A 0.333(5) 1.045(2) 0.545(4) 0.080 Uiso d D 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cu1 0.0479(3) 0.0276(2) 0.0502(3) 0.00473(15) -0.00089(17) -0.01292(16) O1 0.0691(16) 0.0320(11) 0.0538(14) 0.0103(10) -0.0030(12) -0.0103(10) O2 0.0516(14) 0.0385(12) 0.0636(15) 0.0053(10) 0.0001(11) -0.0197(11) O3 0.0619(16) 0.0589(16) 0.107(2) 0.0019(13) 0.0103(15) -0.0453(17) O4 0.0613(18) 0.099(2) 0.096(2) -0.0150(16) -0.0045(16) -0.0470(19) O5 0.0657(17) 0.0735(18) 0.0763(19) -0.0024(14) 0.0068(14) -0.0426(15) O6 0.0669(17) 0.0421(13) 0.0818(19) 0.0090(12) -0.0019(14) -0.0194(13) N1 0.0547(16) 0.0331(13) 0.0538(16) -0.0001(11) -0.0026(13) -0.0140(12) N2 0.0447(14) 0.0310(12) 0.0518(16) 0.0039(11) -0.0031(12) -0.0150(11) N3 0.0556(18) 0.0431(15) 0.0571(18) 0.0082(13) -0.0100(14) -0.0141(13) C1 0.0450(17) 0.0401(16) 0.0510(19) -0.0040(13) -0.0036(14) -0.0155(14) C2 0.065(2) 0.058(2) 0.054(2) -0.0026(18) -0.0025(17) -0.0231(17) C3 0.077(3) 0.072(3) 0.049(2) -0.020(2) -0.0001(19) -0.0166(19) C4 0.077(3) 0.055(2) 0.052(2) -0.0174(19) -0.0088(19) -0.0035(17) C5 0.066(2) 0.0386(18) 0.071(3) -0.0025(16) -0.0109(19) -0.0063(17) C6 0.0473(18) 0.0355(16) 0.055(2) -0.0052(13) -0.0040(15) -0.0127(14) C7 0.0446(17) 0.0370(15) 0.057(2) 0.0011(13) -0.0030(14) -0.0215(14) C8 0.057(2) 0.0288(14) 0.059(2) 0.0080(13) -0.0057(16) -0.0131(14) C9 0.0482(17) 0.0308(14) 0.0515(18) -0.0002(13) -0.0095(14) -0.0109(13) C10 0.071(2) 0.0351(16) 0.064(2) 0.0051(16) -0.0184(18) -0.0135(15) C11 0.079(3) 0.048(2) 0.059(2) -0.0026(18) -0.020(2) -0.0071(17) C12 0.090(3) 0.061(2) 0.050(2) -0.007(2) -0.008(2) -0.0187(18) C13 0.079(3) 0.0465(19) 0.056(2) 0.0026(18) -0.0018(19) -0.0209(17) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cu Cu 0.3201 1.2651 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O1 Cu1 N2 93.93(11) yes O1 Cu1 O2 89.19(11) yes N2 Cu1 O2 170.39(10) yes O1 Cu1 N1 176.23(10) yes N2 Cu1 N1 82.80(11) yes O2 Cu1 N1 94.35(11) yes C6 O1 Cu1 127.7(2) ? Cu1 O2 H2A 106(3) ? Cu1 O2 H2B 113(3) ? H2A O2 H2B 110(2) ? H6B O6 H6A 107(2) ? C9 N1 C13 118.3(3) ? C9 N1 Cu1 115.1(2) ? C13 N1 Cu1 126.6(2) ? C7 N2 C8 118.2(3) ? C7 N2 Cu1 125.8(2) ? C8 N2 Cu1 116.0(2) ? O4 N3 O3 120.3(3) ? O4 N3 O5 119.4(3) ? O3 N3 O5 120.3(3) ? C2 C1 C6 119.2(3) ? C2 C1 C7 117.2(3) ? C6 C1 C7 123.6(3) ? C3 C2 C1 122.0(4) ? C3 C2 H2 119.0 ? C1 C2 H2 119.0 ? C2 C3 C4 118.6(4) ? C2 C3 H3 120.7 ? C4 C3 H3 120.7 ? C3 C4 C5 121.6(4) ? C3 C4 H4 119.2 ? C5 C4 H4 119.2 ? C4 C5 C6 120.5(4) ? C4 C5 H5 119.7 ? C6 C5 H5 119.7 ? O1 C6 C5 119.1(3) ? O1 C6 C1 123.1(3) ? C5 C6 C1 117.9(3) ? N2 C7 C1 125.9(3) ? N2 C7 H7 117.1 ? C1 C7 H7 117.1 ? N2 C8 C9 109.6(2) ? N2 C8 H8A 109.8 ? C9 C8 H8A 109.8 ? N2 C8 H8B 109.8 ? C9 C8 H8B 109.8 ? H8A C8 H8B 108.2 ? N1 C9 C10 121.4(3) ? N1 C9 C8 116.3(3) ? C10 C9 C8 122.3(3) ? C11 C10 C9 119.9(3) ? C11 C10 H10 120.0 ? C9 C10 H10 120.0 ? C10 C11 C12 118.6(4) ? C10 C11 H11 120.7 ? C12 C11 H11 120.7 ? C13 C12 C11 119.8(4) ? C13 C12 H12 120.1 ? C11 C12 H12 120.1 ? N1 C13 C12 122.1(3) ? N1 C13 H13 119.0 ? C12 C13 H13 119.0 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag Cu1 O1 1.889(2) yes Cu1 N2 1.927(3) yes Cu1 O2 1.977(2) yes Cu1 N1 1.993(3) yes O1 C6 1.328(4) ? O2 H2A 0.897(10) ? O2 H2B 0.892(10) ? O3 N3 1.243(4) ? O4 N3 1.236(4) ? O5 N3 1.246(4) ? O6 H6B 0.896(10) ? O6 H6A 0.900(10) ? N1 C9 1.344(4) ? N1 C13 1.349(5) ? N2 C7 1.282(4) ? N2 C8 1.469(4) ? C1 C2 1.406(5) ? C1 C6 1.415(4) ? C1 C7 1.428(5) ? C2 C3 1.361(5) ? C2 H2 0.9300 ? C3 C4 1.379(6) ? C3 H3 0.9300 ? C4 C5 1.383(6) ? C4 H4 0.9300 ? C5 C6 1.403(5) ? C5 H5 0.9300 ? C7 H7 0.9300 ? C8 C9 1.496(5) ? C8 H8A 0.9700 ? C8 H8B 0.9700 ? C9 C10 1.382(5) ? C10 C11 1.363(5) ? C10 H10 0.9300 ? C11 C12 1.375(6) ? C11 H11 0.9300 ? C12 C13 1.362(5) ? C12 H12 0.9300 ? C13 H13 0.9300 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O2 H2A O5 . 0.897(10) 1.787(11) 2.680(4) 173(4) O2 H2A N3 . 0.897(10) 2.47(3) 3.248(4) 146(4) O2 H2A O3 . 0.897(10) 2.51(4) 3.024(4) 117(3) O6 H6B O4 2_566 0.896(10) 1.951(16) 2.825(4) 165(4) O2 H2B O6 2_666 0.892(10) 1.784(14) 2.665(4) 169(4) O6 H6A O1 1_565 0.900(10) 2.022(12) 2.917(3) 173(3) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion N2 Cu1 O1 C6 -0.8(3) O2 Cu1 O1 C6 170.1(3) N1 Cu1 O1 C6 -30.3(16) O1 Cu1 N1 C9 30.3(16) N2 Cu1 N1 C9 0.7(2) O2 Cu1 N1 C9 -170.1(2) O1 Cu1 N1 C13 -147.2(14) N2 Cu1 N1 C13 -176.9(3) O2 Cu1 N1 C13 12.4(3) O1 Cu1 N2 C7 -0.8(3) O2 Cu1 N2 C7 -109.4(6) N1 Cu1 N2 C7 177.4(3) O1 Cu1 N2 C8 178.1(2) O2 Cu1 N2 C8 69.5(7) N1 Cu1 N2 C8 -3.7(2) C6 C1 C2 C3 1.0(5) C7 C1 C2 C3 -178.3(3) C1 C2 C3 C4 0.8(6) C2 C3 C4 C5 -1.6(6) C3 C4 C5 C6 0.6(6) Cu1 O1 C6 C5 -177.3(2) Cu1 O1 C6 C1 2.3(5) C4 C5 C6 O1 -179.2(3) C4 C5 C6 C1 1.2(5) C2 C1 C6 O1 178.5(3) C7 C1 C6 O1 -2.3(5) C2 C1 C6 C5 -1.9(5) C7 C1 C6 C5 177.3(3) C8 N2 C7 C1 -178.0(3) Cu1 N2 C7 C1 0.8(5) C2 C1 C7 N2 179.9(3) C6 C1 C7 N2 0.7(5) C7 N2 C8 C9 -175.3(3) Cu1 N2 C8 C9 5.8(3) C13 N1 C9 C10 -0.3(5) Cu1 N1 C9 C10 -178.1(3) C13 N1 C9 C8 -179.7(3) Cu1 N1 C9 C8 2.5(4) N2 C8 C9 N1 -5.3(4) N2 C8 C9 C10 175.3(3) N1 C9 C10 C11 1.4(6) C8 C9 C10 C11 -179.2(3) C9 C10 C11 C12 -1.6(6) C10 C11 C12 C13 0.8(6) C9 N1 C13 C12 -0.5(6) Cu1 N1 C13 C12 176.9(3) C11 C12 C13 N1 0.3(6)