#------------------------------------------------------------------------------ #$Date: 2011-09-28 15:24:46 +0100 (Wed, 28 Sep 2011) $ #$Revision: 26848 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/37/2203745.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2203745 loop_ _publ_author_name 'Qin, Shi-Dong' 'Feng, Si-Si' 'Zhang, Hong-Mei' 'Yang, Pin' 'Zhu, Miao-Li' _publ_section_title ; N,N,N',N'-Tetrakis[(1H-benzimidazol-2-yl)methyl]ethane-1,2-diamine glycol disolvate ; _journal_issue 6 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first o1121 _journal_page_last o1122 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C34 H32 N10 , 2C2 H6 O2' _chemical_formula_moiety 'C34 H32 N10 , 2C2 H6 O2' _chemical_formula_sum 'C38 H44 N10 O4' _chemical_formula_weight 704.83 _chemical_name_systematic ; N,N,N',N'-Tetrakis[(1H-benzimidazol-2-yl)methyl]ethane-1,2-diamine glycol disolvate ; _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 85.764(3) _cell_angle_beta 76.748(3) _cell_angle_gamma 66.394(3) _cell_formula_units_Z 1 _cell_length_a 9.2367(15) _cell_length_b 9.7383(16) _cell_length_c 11.5791(19) _cell_measurement_reflns_used 1058 _cell_measurement_temperature 298(2) _cell_measurement_theta_max 20.58 _cell_measurement_theta_min 2.28 _cell_volume 928.8(3) _computing_cell_refinement 'SAINT (Bruker, 2000)' _computing_data_collection 'SMART (Bruker, 2000)' _computing_data_reduction SAINT _computing_molecular_graphics 'SHELXTL/PC (Sheldrick, 1999)' _computing_publication_material SHELXTL/PC _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 298(2) _diffrn_measured_fraction_theta_full 25.00 _diffrn_measured_fraction_theta_max 0.913 _diffrn_measurement_device_type 'Bruker SMART 1K CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0188 _diffrn_reflns_av_sigmaI/netI 0.0386 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 10 _diffrn_reflns_limit_l_min -13 _diffrn_reflns_number 4360 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 1.81 _diffrn_standards_decay_% 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.085 _exptl_absorpt_correction_T_max 0.9899 _exptl_absorpt_correction_T_min 0.9725 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 2000)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.260 _exptl_crystal_density_meas 'not measured' _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 374 _exptl_crystal_size_max 0.33 _exptl_crystal_size_mid 0.33 _exptl_crystal_size_min 0.12 _refine_diff_density_max 0.449 _refine_diff_density_min -0.278 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.083 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 237 _refine_ls_number_reflns 2992 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.083 _refine_ls_R_factor_all 0.1002 _refine_ls_R_factor_gt 0.0689 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.1469P)^2^+0.1154P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1977 _refine_ls_wR_factor_ref 0.2498 _reflns_number_gt 2074 _reflns_number_total 2992 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file cv6318.cif _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2203745 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol C1 0.2053(4) 0.4922(4) 0.2594(3) 0.0535(9) Uani d . 1 C C2 0.1950(4) 0.3802(4) 0.4297(3) 0.0540(9) Uani d . 1 C C3 0.1825(5) 0.2893(5) 0.5258(4) 0.0717(11) Uani d . 1 C H3 0.1458 0.2136 0.5239 0.086 Uiso calc R 1 H C4 0.2272(6) 0.3164(6) 0.6243(4) 0.0889(14) Uani d . 1 C H4 0.2198 0.2574 0.6905 0.107 Uiso calc R 1 H C5 0.2817(6) 0.4262(6) 0.6289(4) 0.0883(14) Uani d . 1 C H5 0.3105 0.4399 0.6977 0.106 Uiso calc R 1 H C6 0.2951(5) 0.5171(5) 0.5346(4) 0.0797(13) Uani d . 1 C H6 0.3308 0.5931 0.5383 0.096 Uiso calc R 1 H C7 0.2529(4) 0.4906(4) 0.4331(3) 0.0577(9) Uani d . 1 C C8 0.1841(5) 0.5368(4) 0.1367(3) 0.0632(10) Uani d . 1 C H8A 0.0836 0.6242 0.1408 0.076 Uiso calc R 1 H H8B 0.2719 0.5648 0.0956 0.076 Uiso calc R 1 H C9 0.0889(4) 0.4788(4) -0.0245(3) 0.0534(9) Uani d . 1 C H9A 0.1266 0.4044 -0.0877 0.064 Uiso calc R 1 H H9B 0.1071 0.5663 -0.0577 0.064 Uiso calc R 1 H C10 0.3460(4) 0.3086(4) 0.0211(3) 0.0577(9) Uani d . 1 C H10A 0.4031 0.2744 0.0852 0.069 Uiso calc R 1 H H10B 0.4039 0.3565 -0.0367 0.069 Uiso calc R 1 H C11 0.3434(4) 0.1777(4) -0.0358(3) 0.0513(8) Uani d . 1 C C12 0.2863(4) -0.0055(4) -0.0750(3) 0.0575(9) Uani d . 1 C C13 0.2256(5) -0.1141(5) -0.0743(4) 0.0800(12) Uani d . 1 C H13 0.1491 -0.1238 -0.0099 0.096 Uiso calc R 1 H C14 0.2829(5) -0.2078(5) -0.1726(5) 0.0874(14) Uani d . 1 C H14 0.2450 -0.2828 -0.1742 0.105 Uiso calc R 1 H C15 0.3960(5) -0.1928(5) -0.2698(4) 0.0762(12) Uani d . 1 C H15 0.4304 -0.2566 -0.3354 0.091 Uiso calc R 1 H C16 0.4574(4) -0.0870(4) -0.2707(3) 0.0655(10) Uani d . 1 C H16 0.5344 -0.0780 -0.3351 0.079 Uiso calc R 1 H C17 0.4003(4) 0.0072(4) -0.1715(3) 0.0535(9) Uani d . 1 C N1 0.1662(3) 0.3836(3) 0.3178(2) 0.0552(8) Uani d . 1 N H1 0.1299 0.3268 0.2906 0.066 Uiso calc R 1 H N2 0.2592(3) 0.5606(3) 0.3225(3) 0.0625(8) Uani d . 1 N N3 0.4350(3) 0.1236(3) -0.1438(2) 0.0544(8) Uani d . 1 N H3A 0.5028 0.1561 -0.1876 0.065 Uiso calc R 1 H N4 0.2519(3) 0.1040(3) 0.0094(3) 0.0616(8) Uani d . 1 N N5 0.1809(3) 0.4180(3) 0.0683(2) 0.0507(7) Uani d . 1 N C18 0.0603(6) 1.0397(6) 0.3095(5) 0.0934(14) Uani d . 1 C H18A 0.0165 0.9998 0.2581 0.112 Uiso calc R 1 H H18B -0.0272 1.0907 0.3759 0.112 Uiso calc R 1 H C19 0.1834(7) 0.9153(6) 0.3547(5) 0.1043(17) Uani d . 1 C H19A 0.2354 0.9549 0.3995 0.125 Uiso calc R 1 H H19B 0.1313 0.8595 0.4088 0.125 Uiso calc R 1 H O1 0.1136(5) 1.1449(4) 0.2466(3) 0.1031(11) Uani d . 1 O H1A 0.1554 1.1155 0.1776 0.155 Uiso calc R 1 H O2 0.3022(4) 0.8170(3) 0.2660(3) 0.0987(11) Uani d . 1 O H2 0.2943 0.7357 0.2713 0.148 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 0.063(2) 0.0491(19) 0.047(2) -0.0179(16) -0.0149(16) -0.0024(16) C2 0.0553(19) 0.053(2) 0.047(2) -0.0151(16) -0.0093(16) -0.0067(16) C3 0.077(2) 0.063(2) 0.056(2) -0.0142(19) -0.001(2) -0.0068(19) C4 0.112(3) 0.085(3) 0.050(3) -0.016(3) -0.022(2) 0.001(2) C5 0.095(3) 0.112(4) 0.052(3) -0.029(3) -0.021(2) -0.015(3) C6 0.084(3) 0.097(3) 0.060(3) -0.035(2) -0.013(2) -0.021(2) C7 0.060(2) 0.063(2) 0.046(2) -0.0211(17) -0.0062(16) -0.0108(17) C8 0.079(2) 0.051(2) 0.056(2) -0.0200(18) -0.0172(19) -0.0034(17) C9 0.0669(19) 0.0511(19) 0.0374(18) -0.0179(16) -0.0139(15) 0.0058(15) C10 0.0568(19) 0.061(2) 0.055(2) -0.0207(16) -0.0170(16) -0.0007(17) C11 0.0538(18) 0.0464(19) 0.0476(19) -0.0130(15) -0.0113(15) -0.0013(15) C12 0.0544(19) 0.051(2) 0.062(2) -0.0159(16) -0.0098(17) -0.0056(17) C13 0.077(3) 0.072(3) 0.092(3) -0.040(2) 0.004(2) -0.014(2) C14 0.084(3) 0.069(3) 0.122(4) -0.040(2) -0.023(3) -0.010(3) C15 0.074(2) 0.067(3) 0.087(3) -0.025(2) -0.016(2) -0.018(2) C16 0.062(2) 0.066(2) 0.060(2) -0.0188(18) -0.0047(18) -0.0078(19) C17 0.0514(18) 0.0446(18) 0.058(2) -0.0117(14) -0.0126(16) -0.0007(16) N1 0.0620(17) 0.0524(17) 0.0527(18) -0.0225(13) -0.0133(14) -0.0069(14) N2 0.0720(19) 0.0610(19) 0.0583(19) -0.0298(15) -0.0105(15) -0.0126(15) N3 0.0583(16) 0.0501(16) 0.0519(17) -0.0208(13) -0.0073(13) 0.0007(13) N4 0.0655(18) 0.0571(18) 0.0576(19) -0.0217(15) -0.0081(14) -0.0037(15) N5 0.0646(16) 0.0412(14) 0.0407(15) -0.0117(12) -0.0178(13) 0.0003(12) C18 0.092(3) 0.093(4) 0.085(3) -0.043(3) 0.009(3) 0.002(3) C19 0.127(4) 0.098(4) 0.081(3) -0.051(3) 0.009(3) -0.011(3) O1 0.174(3) 0.085(2) 0.0628(19) -0.079(2) 0.007(2) -0.0130(16) O2 0.104(2) 0.083(2) 0.099(2) -0.0511(18) 0.0299(18) -0.0200(19) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle N2 C1 N1 . . 113.6(3) N2 C1 C8 . . 122.6(3) N1 C1 C8 . . 123.8(3) N1 C2 C3 . . 132.8(3) N1 C2 C7 . . 106.1(3) C3 C2 C7 . . 121.1(3) C4 C3 C2 . . 116.6(4) C4 C3 H3 . . 121.7 C2 C3 H3 . . 121.7 C5 C4 C3 . . 122.7(4) C5 C4 H4 . . 118.7 C3 C4 H4 . . 118.7 C4 C5 C6 . . 121.5(4) C4 C5 H5 . . 119.2 C6 C5 H5 . . 119.2 C5 C6 C7 . . 117.0(4) C5 C6 H6 . . 121.5 C7 C6 H6 . . 121.5 C2 C7 C6 . . 121.1(4) C2 C7 N2 . . 108.8(3) C6 C7 N2 . . 130.1(4) N5 C8 C1 . . 113.2(3) N5 C8 H8A . . 108.9 C1 C8 H8A . . 108.9 N5 C8 H8B . . 108.9 C1 C8 H8B . . 108.9 H8A C8 H8B . . 107.8 N5 C9 C9 . 2_565 111.0(3) N5 C9 H9A . . 109.4 C9 C9 H9A 2_565 . 109.4 N5 C9 H9B . . 109.4 C9 C9 H9B 2_565 . 109.4 H9A C9 H9B . . 108.0 N5 C10 C11 . . 111.1(3) N5 C10 H10A . . 109.4 C11 C10 H10A . . 109.4 N5 C10 H10B . . 109.4 C11 C10 H10B . . 109.4 H10A C10 H10B . . 108.0 N4 C11 N3 . . 112.1(3) N4 C11 C10 . . 125.6(3) N3 C11 C10 . . 122.3(3) C13 C12 C17 . . 120.5(3) C13 C12 N4 . . 130.6(4) C17 C12 N4 . . 108.9(3) C14 C13 C12 . . 117.4(4) C14 C13 H13 . . 121.3 C12 C13 H13 . . 121.3 C13 C14 C15 . . 121.5(4) C13 C14 H14 . . 119.2 C15 C14 H14 . . 119.2 C16 C15 C14 . . 121.4(4) C16 C15 H15 . . 119.3 C14 C15 H15 . . 119.3 C15 C16 C17 . . 117.1(4) C15 C16 H16 . . 121.4 C17 C16 H16 . . 121.4 N3 C17 C12 . . 105.8(3) N3 C17 C16 . . 132.2(3) C12 C17 C16 . . 122.0(3) C1 N1 C2 . . 106.9(3) C1 N1 H1 . . 126.5 C2 N1 H1 . . 126.5 C1 N2 C7 . . 104.5(3) C11 N3 C17 . . 107.6(3) C11 N3 H3A . . 126.2 C17 N3 H3A . . 126.2 C11 N4 C12 . . 105.6(3) C8 N5 C9 . . 111.8(3) C8 N5 C10 . . 110.8(3) C9 N5 C10 . . 112.5(3) O1 C18 C19 . . 115.1(4) O1 C18 H18A . . 108.5 C19 C18 H18A . . 108.5 O1 C18 H18B . . 108.5 C19 C18 H18B . . 108.5 H18A C18 H18B . . 107.5 O2 C19 C18 . . 113.8(5) O2 C19 H19A . . 108.8 C18 C19 H19A . . 108.8 O2 C19 H19B . . 108.8 C18 C19 H19B . . 108.8 H19A C19 H19B . . 107.7 C18 O1 H1A . . 109.5 C19 O2 H2 . . 109.5 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag C1 N2 . 1.315(4) y C1 N1 . 1.339(4) y C1 C8 . 1.488(5) y C2 N1 . 1.377(4) y C2 C3 . 1.384(5) y C2 C7 . 1.385(5) y C3 C4 . 1.374(6) y C3 H3 . 0.9300 ? C4 C5 . 1.361(7) y C4 H4 . 0.9300 ? C5 C6 . 1.369(7) y C5 H5 . 0.9300 ? C6 C7 . 1.392(5) y C6 H6 . 0.9300 ? C7 N2 . 1.406(5) y C8 N5 . 1.463(4) y C8 H8A . 0.9700 ? C8 H8B . 0.9700 ? C9 N5 . 1.466(4) y C9 C9 2_565 1.500(6) ? C9 H9A . 0.9700 ? C9 H9B . 0.9700 ? C10 N5 . 1.470(4) y C10 C11 . 1.489(5) y C10 H10A . 0.9700 ? C10 H10B . 0.9700 ? C11 N4 . 1.316(4) y C11 N3 . 1.347(4) y C12 C13 . 1.380(5) y C12 C17 . 1.385(5) y C12 N4 . 1.390(4) y C13 C14 . 1.379(6) y C13 H13 . 0.9300 ? C14 C15 . 1.392(6) y C14 H14 . 0.9300 ? C15 C16 . 1.359(5) y C15 H15 . 0.9300 ? C16 C17 . 1.389(5) y C16 H16 . 0.9300 ? C17 N3 . 1.372(4) y N1 H1 . 0.8600 ? N3 H3A . 0.8600 ? C18 O1 . 1.397(5) ? C18 C19 . 1.452(7) ? C18 H18A . 0.9700 ? C18 H18B . 0.9700 ? C19 O2 . 1.401(5) ? C19 H19A . 0.9700 ? C19 H19B . 0.9700 ? O1 H1A . 0.8200 ? O2 H2 . 0.8200 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O1 H1A N4 1_565 0.82 1.94 2.734(4) 164 y O2 H2 N2 . 0.82 1.89 2.693(4) 166 y N3 H3A O2 2_665 0.86 1.93 2.767(4) 164 y N1 H1 O1 1_545 0.86 1.95 2.774(4) 160 y loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion N1 C2 C3 C4 . 178.0(4) C7 C2 C3 C4 . 1.2(5) C2 C3 C4 C5 . -0.2(6) C3 C4 C5 C6 . 0.1(7) C4 C5 C6 C7 . -1.0(6) N1 C2 C7 C6 . -179.8(3) C3 C2 C7 C6 . -2.2(5) N1 C2 C7 N2 . -0.1(3) C3 C2 C7 N2 . 177.4(3) C5 C6 C7 C2 . 2.0(6) C5 C6 C7 N2 . -177.5(4) N2 C1 C8 N5 . 159.0(3) N1 C1 C8 N5 . -23.6(5) N5 C10 C11 N4 . -46.1(5) N5 C10 C11 N3 . 132.1(3) C17 C12 C13 C14 . 0.0(6) N4 C12 C13 C14 . 179.6(4) C12 C13 C14 C15 . -0.7(7) C13 C14 C15 C16 . 1.4(7) C14 C15 C16 C17 . -1.1(6) C13 C12 C17 N3 . -179.7(3) N4 C12 C17 N3 . 0.6(4) C13 C12 C17 C16 . 0.2(5) N4 C12 C17 C16 . -179.4(3) C15 C16 C17 N3 . -179.8(3) C15 C16 C17 C12 . 0.3(5) N2 C1 N1 C2 . 0.6(4) C8 C1 N1 C2 . -177.0(3) C3 C2 N1 C1 . -177.4(4) C7 C2 N1 C1 . -0.3(3) N1 C1 N2 C7 . -0.7(4) C8 C1 N2 C7 . 177.0(3) C2 C7 N2 C1 . 0.5(4) C6 C7 N2 C1 . -179.9(4) N4 C11 N3 C17 . 0.4(4) C10 C11 N3 C17 . -178.1(3) C12 C17 N3 C11 . -0.6(3) C16 C17 N3 C11 . 179.5(4) N3 C11 N4 C12 . 0.0(4) C10 C11 N4 C12 . 178.4(3) C13 C12 N4 C11 . 180.0(4) C17 C12 N4 C11 . -0.4(4) C1 C8 N5 C9 . 153.4(3) C1 C8 N5 C10 . -80.2(4) C9 C9 N5 C8 2_565 -84.1(4) C9 C9 N5 C10 2_565 150.5(4) C11 C10 N5 C8 . 173.0(3) C11 C10 N5 C9 . -61.0(4) O1 C18 C19 O2 . -69.1(6)