#------------------------------------------------------------------------------ #$Date: 2008-02-08 10:23:56 +0000 (Fri, 08 Feb 2008) $ #$Revision: 101 $ #$URL: svn://www.crystallography.net/cod/cif/2/2204265.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_2204265 loop_ _publ_author_name 'Thomas C. Lewis' 'Derek A. Tocher' _publ_section_title ; Redetermination of 5,5-dihydroxybarbituric acid trihydrate (alloxan tetrahydrate) ; _journal_issue 10 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first o1748 _journal_page_last o1750 _journal_volume 60 _journal_year 2004 _chemical_formula_moiety 'C4 H4 N2 O5, 3H2 O' _chemical_formula_sum 'C4 H10 N2 O8' _chemical_formula_weight 214.14 _chemical_name_systematic ; 5,5-dihydroxybarbituric acid trihydrate ; _symmetry_cell_setting monoclinic _symmetry_space_group_name_H-M C2/m _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _cell_angle_alpha 90.00 _cell_angle_beta 91.4650(10) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 9.4614(8) _cell_length_b 12.2095(10) _cell_length_c 7.2973(6) _cell_measurement_reflns_used 3125 _cell_measurement_temperature 150(2) _cell_measurement_theta_max 28.22 _cell_measurement_theta_min 2.72 _cell_volume 842.70(12) _computing_cell_refinement 'SAINT (Bruker, 2000)' _computing_data_collection 'SMART (Bruker, 2000)' _computing_data_reduction SAINT _computing_molecular_graphics ; Mercury (Bruno et al., 2002) and SHELXTL (Bruker, 2000) ; _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1990)' _diffrn_ambient_temperature 150(2) _diffrn_measured_fraction_theta_full 0.985 _diffrn_measured_fraction_theta_max 0.953 _diffrn_measurement_device_type 'Bruker SMART APEX diffractometer' _diffrn_measurement_method '\w rotation with narrow frames' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0145 _diffrn_reflns_av_sigmaI/netI 0.0128 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_h_min -12 _diffrn_reflns_limit_k_max 15 _diffrn_reflns_limit_k_min -15 _diffrn_reflns_limit_l_max 9 _diffrn_reflns_limit_l_min -9 _diffrn_reflns_number 3701 _diffrn_reflns_theta_full 26.00 _diffrn_reflns_theta_max 28.22 _diffrn_reflns_theta_min 2.72 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.167 _exptl_absorpt_correction_T_max 0.9819 _exptl_absorpt_correction_T_min 0.8893 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 1996)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.688 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 448 _exptl_crystal_size_max 0.72 _exptl_crystal_size_mid 0.62 _exptl_crystal_size_min 0.11 _refine_diff_density_max 0.411 _refine_diff_density_min -0.237 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.116 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 100 _refine_ls_number_reflns 1036 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.116 _refine_ls_R_factor_all 0.0286 _refine_ls_R_factor_gt 0.0283 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0445P)^2^+0.3397P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0771 _refine_ls_wR_factor_ref 0.0775 _reflns_number_gt 1019 _reflns_number_total 1036 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file bt6507.cif loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z' '-x, -y, -z' 'x, -y, z' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z' loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol O2 0.07576(10) 0.0000 0.71087(12) 0.0213(2) Uani d S 1 O O6 0.37126(7) 0.19208(5) 0.35604(9) 0.02282(19) Uani d . 1 O O7 0.28600(10) 0.0000 0.13202(12) 0.0194(2) Uani d S 1 O O8 0.50741(9) 0.0000 0.28277(13) 0.0178(2) Uani d S 1 O O1W 0.0000 0.15469(8) 1.0000 0.0266(2) Uani d S 1 O O2W 0.15495(8) 0.33927(6) 0.11287(12) 0.0282(2) Uani d . 1 O N1 0.21286(7) 0.09635(6) 0.51944(9) 0.01624(19) Uani d . 1 N C2 0.16226(12) 0.0000 0.59004(16) 0.0154(2) Uani d S 1 C C5 0.36230(12) 0.0000 0.29895(16) 0.0151(2) Uani d S 1 C C6 0.31848(9) 0.10501(7) 0.39599(11) 0.0157(2) Uani d . 1 C H1 0.1840(14) 0.1584(11) 0.574(2) 0.032(3) Uiso d . 1 H H7 0.303(3) 0.058(2) 0.076(5) 0.040(8) Uiso d P 0.50 H H8 0.535(3) -0.056(2) 0.244(4) 0.034(7) Uiso d P 0.50 H H9 0.0322(19) 0.1122(16) 0.915(2) 0.055(5) Uiso d . 1 H H10 0.1164(17) 0.2799(16) 0.078(2) 0.051(4) Uiso d . 1 H H11A 0.181(3) 0.373(3) 0.031(5) 0.036(8) Uiso d P 0.50 H H11B 0.090(3) 0.373(3) 0.160(4) 0.027(6) Uiso d P 0.50 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O2 0.0226(4) 0.0201(5) 0.0216(5) 0.000 0.0089(3) 0.000 O6 0.0270(4) 0.0156(3) 0.0263(4) -0.0019(2) 0.0091(3) 0.0007(2) O7 0.0256(5) 0.0181(5) 0.0145(4) 0.000 -0.0013(3) 0.000 O8 0.0157(4) 0.0151(4) 0.0229(4) 0.000 0.0058(3) 0.000 O1W 0.0331(5) 0.0177(5) 0.0296(5) 0.000 0.0112(4) 0.000 O2W 0.0274(4) 0.0198(4) 0.0369(4) 0.0010(3) -0.0067(3) -0.0012(3) N1 0.0183(3) 0.0130(4) 0.0177(4) 0.0003(2) 0.0041(3) -0.0011(3) C2 0.0152(5) 0.0158(5) 0.0153(5) 0.000 0.0008(4) 0.000 C5 0.0162(5) 0.0153(5) 0.0141(5) 0.000 0.0026(4) 0.000 C6 0.0171(4) 0.0153(4) 0.0146(4) 0.0001(3) 0.0005(3) 0.0006(3) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance O2 C2 . 1.2183(15) O6 C6 . 1.2132(11) O7 C5 . 1.4000(14) O7 H7 . 0.83(3) O8 C5 . 1.3810(14) O8 H8 . 0.78(3) O1W H9 . 0.868(18) O2W H10 . 0.85(2) O2W H11A . 0.77(4) O2W H11B . 0.82(3) N1 C6 . 1.3666(11) N1 C2 . 1.3752(9) N1 H1 . 0.901(14) C2 N1 6 1.3752(9) C5 C6 . 1.5272(10) C5 C6 6 1.5272(10) loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_3 _geom_angle C5 O7 H7 . 109(2) C5 O8 H8 . 112(2) H10 O2W H11A . 111(3) H10 O2W H11B . 104(2) H11A O2W H11B . 108(3) C6 N1 C2 . 125.49(8) C6 N1 H1 . 117.5(8) C2 N1 H1 . 116.2(9) O2 C2 N1 . 121.19(5) O2 C2 N1 6 121.19(5) N1 C2 N1 6 117.62(10) O8 C5 O7 . 114.66(10) O8 C5 C6 . 108.78(6) O7 C5 C6 . 105.27(6) O8 C5 C6 6 108.78(6) O7 C5 C6 6 105.27(6) C6 C5 C6 6 114.19(9) O6 C6 N1 . 122.59(8) O6 C6 C5 . 120.40(7) N1 C6 C5 . 116.90(7) loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 _geom_torsion C6 N1 C2 O2 . . 173.91(10) C6 N1 C2 N1 . 6 -6.06(16) C2 N1 C6 O6 . . -170.32(9) C2 N1 C6 C5 . . 13.52(13) O8 C5 C6 O6 . . 42.76(12) O7 C5 C6 O6 . . -80.59(10) C6 C5 C6 O6 6 . 164.45(6) O8 C5 C6 N1 . . -140.99(8) O7 C5 C6 N1 . . 95.66(9) C6 C5 C6 N1 6 . -19.30(13) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H1 O6 7_556 0.901(14) 1.970(14) 2.8580(10) 168.1(13) O7 H7 O2W 7 0.83(3) 1.92(3) 2.7217(11) 163(3) O8 H8 O2W 3_545 0.78(3) 1.98(3) 2.7250(10) 160(3) O1W H9 O2 . 0.868(18) 2.075(19) 2.9343(9) 170.6(16) O2W H10 O1W 1_554 0.85(2) 1.96(2) 2.8009(11) 171.3(15) O2W H11A O7 7 0.77(4) 1.99(4) 2.7217(11) 160(3) O2W H11B O8 3_455 0.82(3) 1.96(3) 2.7250(10) 154(3)