#------------------------------------------------------------------------------ #$Date: 2012-01-04 09:47:25 +0000 (Wed, 04 Jan 2012) $ #$Revision: 31984 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/43/2204316.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2204316 loop_ _publ_author_name 'Bo Yang' 'Shu-Sheng Zhang' 'Yan-Fang Wang' 'Xue-Mei Li' 'Kui Jiao' 'M. Kassim' 'Yamin, Bohari M.' _publ_section_title ; Benzaldehyde 1-(2,3,4-tri-O-acetyl-\b-D-xylopyranosyl)thiosemicarbazone ; _journal_issue 10 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first o1902 _journal_page_last o1904 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C19 H23 N3 O7 S' _chemical_formula_moiety 'C19 H23 N3 O7 S' _chemical_formula_sum 'C19 H23 N3 O7 S' _chemical_formula_weight 437.46 _chemical_name_systematic ; Benzaldehyde 1-(2,3,4-tri-O-acetyl-\b-D-xylopyranosyl)thiosemicarbazone ; _symmetry_cell_setting orthorhombic _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.8789(9) _cell_length_b 12.6890(13) _cell_length_c 19.506(2) _cell_measurement_reflns_used 3603 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 25.0 _cell_measurement_theta_min 1.5 _cell_volume 2197.6(4) _computing_cell_refinement 'SAINT (Siemens, 1996)' _computing_data_collection 'SMART (Siemens, 1996)' _computing_data_reduction SAINT _computing_molecular_graphics SHELXTL _computing_publication_material ; SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 1990) ; _computing_structure_refinement SHELXTL _computing_structure_solution 'SHELXTL (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_detector_area_resol_mean 8.33 _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Simens SMART CCD area-detector' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0225 _diffrn_reflns_av_sigmaI/netI 0.0326 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 13 _diffrn_reflns_limit_k_min -15 _diffrn_reflns_limit_l_max 23 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 8924 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 1.91 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count none _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.191 _exptl_absorpt_correction_T_max 0.9573 _exptl_absorpt_correction_T_min 0.9138 _exptl_absorpt_correction_type empirical _exptl_absorpt_process_details '(SADABS; Sheldrick, 1996)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.322 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 920 _exptl_crystal_size_max 0.48 _exptl_crystal_size_mid 0.39 _exptl_crystal_size_min 0.23 _refine_diff_density_max 0.228 _refine_diff_density_min -0.179 _refine_ls_abs_structure_details 'Flack (1983), 1652 Friedel pairs [CHECK?]' _refine_ls_abs_structure_Flack 0.05(10) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.199 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 271 _refine_ls_number_reflns 3873 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.199 _refine_ls_R_factor_all 0.0570 _refine_ls_R_factor_gt 0.0521 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0459P)^2^+0.3313P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1125 _refine_ls_wR_factor_ref 0.1149 _reflns_number_gt 3603 _reflns_number_total 3873 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file cv6371.cif loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol S1 0.06591(9) 0.91157(6) 0.04843(4) 0.0545(2) Uani d . 1 S O1 0.3260(2) 0.68027(15) 0.08592(11) 0.0527(5) Uani d . 1 O O2 0.3020(2) 0.41288(17) 0.15746(11) 0.0566(5) Uani d . 1 O O3 0.5516(3) 0.4026(2) 0.16190(14) 0.0774(7) Uani d . 1 O O4 0.1600(2) 0.38632(15) 0.03111(11) 0.0511(5) Uani d . 1 O O5 -0.0856(3) 0.37321(19) 0.05722(14) 0.0727(7) Uani d . 1 O O6 0.0425(2) 0.56884(16) -0.03053(10) 0.0498(5) Uani d . 1 O O7 0.1764(3) 0.5919(3) -0.12668(13) 0.0863(8) Uani d . 1 O N1 0.2239(3) 0.75645(18) -0.01022(14) 0.0511(7) Uani d . 1 N H1A 0.2779 0.7365 -0.0444 0.061 Uiso calc R 1 H N2 0.2127(3) 0.90937(19) -0.06830(13) 0.0519(6) Uani d . 1 N H2A 0.1814 0.9729 -0.0739 0.062 Uiso calc R 1 H N3 0.3030(3) 0.86367(19) -0.11660(13) 0.0478(6) Uani d . 1 N C1 0.3240(4) 0.6018(2) 0.13752(16) 0.0547(8) Uani d . 1 C H1B 0.2391 0.6136 0.1679 0.066 Uiso calc R 1 H H1C 0.4156 0.6060 0.1645 0.066 Uiso calc R 1 H C2 0.3114(3) 0.4933(2) 0.10518(15) 0.0453(7) Uani d . 1 C H2B 0.3985 0.4801 0.0755 0.054 Uiso calc R 1 H C3 0.1689(3) 0.48808(19) 0.06388(15) 0.0423(7) Uani d . 1 C H3B 0.0810 0.4995 0.0934 0.051 Uiso calc R 1 H C4 0.1779(3) 0.5724(2) 0.00970(14) 0.0439(7) Uani d . 1 C H4A 0.2642 0.5578 -0.0201 0.053 Uiso calc R 1 H C5 0.1986(3) 0.6807(2) 0.04241(16) 0.0472(7) Uani d . 1 C H5A 0.1085 0.6996 0.0687 0.057 Uiso calc R 1 H C6 0.4320(4) 0.3704(2) 0.17908(16) 0.0556(8) Uani d . 1 C C7 0.4055(5) 0.2792(3) 0.2246(2) 0.0848(12) Uani d . 1 C H7A 0.5004 0.2507 0.2392 0.127 Uiso calc R 1 H H7B 0.3500 0.2262 0.2002 0.127 Uiso calc R 1 H H7C 0.3488 0.3015 0.2639 0.127 Uiso calc R 1 H C8 0.0246(4) 0.3369(2) 0.03212(18) 0.0576(9) Uani d . 1 C C9 0.0357(6) 0.2327(3) -0.0023(3) 0.0969(14) Uani d . 1 C H9A -0.0607 0.1984 -0.0012 0.145 Uiso calc R 1 H H9B 0.1085 0.1898 0.0211 0.145 Uiso calc R 1 H H9C 0.0665 0.2424 -0.0490 0.145 Uiso calc R 1 H C10 0.0595(4) 0.5722(3) -0.09928(17) 0.0598(9) Uani d . 1 C C11 -0.0849(5) 0.5530(4) -0.1344(2) 0.0898(13) Uani d . 1 C H11A -0.0702 0.5566 -0.1831 0.135 Uiso calc R 1 H H11B -0.1566 0.6056 -0.1207 0.135 Uiso calc R 1 H H11C -0.1220 0.4845 -0.1222 0.135 Uiso calc R 1 H C12 0.1728(3) 0.8548(2) -0.01192(16) 0.0454(7) Uani d . 1 C C13 0.3373(3) 0.9170(2) -0.16893(16) 0.0506(7) Uani d . 1 C H13A 0.2982 0.9845 -0.1742 0.061 Uiso calc R 1 H C14 0.4370(3) 0.8743(2) -0.22109(15) 0.0474(7) Uani d . 1 C C15 0.4844(5) 0.9373(3) -0.27516(19) 0.0741(11) Uani d . 1 C H15A 0.4472 1.0056 -0.2791 0.089 Uiso calc R 1 H C16 0.5854(5) 0.9005(4) -0.3232(2) 0.0836(12) Uani d . 1 C H16A 0.6149 0.9440 -0.3591 0.100 Uiso calc R 1 H C17 0.6420(5) 0.8020(3) -0.3187(2) 0.0774(11) Uani d . 1 C H17A 0.7105 0.7774 -0.3511 0.093 Uiso calc R 1 H C18 0.5966(5) 0.7388(3) -0.2656(2) 0.0788(11) Uani d . 1 C H18A 0.6354 0.6710 -0.2619 0.095 Uiso calc R 1 H C19 0.4954(4) 0.7735(2) -0.21777(17) 0.0622(9) Uani d . 1 C H19A 0.4655 0.7287 -0.1826 0.075 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 0.0497(4) 0.0520(4) 0.0617(5) 0.0128(4) 0.0014(4) -0.0080(4) O1 0.0556(14) 0.0414(11) 0.0612(13) -0.0035(10) -0.0032(11) -0.0040(10) O2 0.0502(12) 0.0600(13) 0.0597(13) -0.0001(11) 0.0074(11) 0.0133(11) O3 0.0556(15) 0.0757(16) 0.1010(19) -0.0053(14) -0.0074(14) 0.0295(15) O4 0.0441(11) 0.0385(10) 0.0706(14) -0.0011(9) 0.0092(10) -0.0084(9) O5 0.0520(14) 0.0649(14) 0.1013(19) -0.0140(12) 0.0149(14) -0.0114(14) O6 0.0369(11) 0.0588(13) 0.0538(13) 0.0026(9) 0.0023(10) 0.0021(9) O7 0.0582(16) 0.138(3) 0.0627(16) 0.0024(18) 0.0111(13) -0.0023(16) N1 0.0565(16) 0.0395(13) 0.0573(16) 0.0062(11) 0.0181(13) 0.0010(11) N2 0.0502(14) 0.0385(12) 0.0670(16) 0.0107(12) 0.0037(13) 0.0022(13) N3 0.0442(14) 0.0434(13) 0.0559(16) -0.0021(12) 0.0061(13) 0.0006(12) C1 0.059(2) 0.0507(18) 0.0544(18) 0.0024(17) 0.0006(16) -0.0050(14) C2 0.0436(17) 0.0411(15) 0.0512(18) 0.0004(14) 0.0094(15) 0.0030(13) C3 0.0357(15) 0.0382(14) 0.0530(17) -0.0007(12) 0.0079(14) -0.0069(13) C4 0.0362(15) 0.0435(15) 0.0519(17) 0.0051(13) 0.0043(14) -0.0038(13) C5 0.0439(17) 0.0403(15) 0.0574(19) 0.0008(13) 0.0101(16) 0.0032(14) C6 0.060(2) 0.0520(18) 0.0543(19) -0.0086(17) -0.0033(18) 0.0051(14) C7 0.093(3) 0.073(3) 0.088(3) -0.003(2) -0.006(2) 0.028(2) C8 0.057(2) 0.0459(17) 0.070(2) -0.0103(16) -0.0004(18) 0.0003(16) C9 0.096(3) 0.070(3) 0.125(4) -0.028(2) 0.013(3) -0.035(2) C10 0.050(2) 0.076(2) 0.054(2) 0.0105(19) 0.0017(17) -0.0101(17) C11 0.068(3) 0.123(4) 0.078(3) 0.004(3) -0.011(2) -0.015(3) C12 0.0366(16) 0.0414(16) 0.0583(19) -0.0018(13) -0.0091(15) -0.0040(14) C13 0.0476(17) 0.0393(15) 0.065(2) 0.0008(14) -0.0067(16) 0.0065(15) C14 0.0457(17) 0.0463(16) 0.0503(17) -0.0051(14) -0.0060(15) 0.0044(13) C15 0.087(3) 0.058(2) 0.077(3) 0.013(2) 0.007(2) 0.0239(19) C16 0.089(3) 0.093(3) 0.070(2) 0.004(3) 0.019(2) 0.019(2) C17 0.087(3) 0.084(3) 0.061(2) -0.001(2) 0.012(2) -0.009(2) C18 0.106(3) 0.054(2) 0.077(3) 0.004(2) 0.018(2) -0.0050(19) C19 0.084(2) 0.0451(17) 0.058(2) -0.0084(17) 0.0100(19) 0.0015(15) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag S1 C12 1.675(3) yes O1 C5 1.415(4) yes O1 C1 1.416(4) yes O2 C6 1.342(4) ? O2 C2 1.445(3) ? O3 C6 1.186(4) ? O4 C8 1.356(4) ? O4 C3 1.443(3) ? O5 C8 1.187(4) ? O6 C10 1.350(4) ? O6 C4 1.436(3) ? O7 C10 1.194(4) ? N1 C12 1.328(4) ? N1 C5 1.424(4) ? N1 H1A 0.8600 ? N2 C12 1.347(4) ? N2 N3 1.366(3) ? N2 H2A 0.8600 ? N3 C13 1.262(4) ? C1 C2 1.519(4) yes C1 H1B 0.9700 ? C1 H1C 0.9700 ? C2 C3 1.501(4) yes C2 H2B 0.9800 ? C3 C4 1.506(4) yes C3 H3B 0.9800 ? C4 C5 1.526(4) yes C4 H4A 0.9800 ? C5 H5A 0.9800 ? C6 C7 1.477(5) ? C7 H7A 0.9600 ? C7 H7B 0.9600 ? C7 H7C 0.9600 ? C8 C9 1.487(5) ? C9 H9A 0.9600 ? C9 H9B 0.9600 ? C9 H9C 0.9600 ? C10 C11 1.474(5) ? C11 H11A 0.9600 ? C11 H11B 0.9600 ? C11 H11C 0.9600 ? C13 C14 1.454(4) ? C13 H13A 0.9300 ? C14 C19 1.381(4) ? C14 C15 1.389(4) ? C15 C16 1.378(5) ? C15 H15A 0.9300 ? C16 C17 1.350(6) ? C16 H16A 0.9300 ? C17 C18 1.371(5) ? C17 H17A 0.9300 ? C18 C19 1.368(5) ? C18 H18A 0.9300 ? C19 H19A 0.9300 ? loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C5 O1 C1 114.8(2) C6 O2 C2 117.1(2) C8 O4 C3 117.1(2) C10 O6 C4 116.6(2) C12 N1 C5 126.7(3) C12 N1 H1A 116.6 C5 N1 H1A 116.6 C12 N2 N3 119.9(2) C12 N2 H2A 120.0 N3 N2 H2A 120.0 C13 N3 N2 118.1(3) O1 C1 C2 110.1(2) O1 C1 H1B 109.6 C2 C1 H1B 109.6 O1 C1 H1C 109.6 C2 C1 H1C 109.6 H1B C1 H1C 108.2 O2 C2 C3 107.4(2) O2 C2 C1 110.6(2) C3 C2 C1 109.0(2) O2 C2 H2B 110.0 C3 C2 H2B 110.0 C1 C2 H2B 110.0 O4 C3 C2 108.8(2) O4 C3 C4 109.1(2) C2 C3 C4 107.5(2) O4 C3 H3B 110.4 C2 C3 H3B 110.4 C4 C3 H3B 110.4 O6 C4 C3 108.5(2) O6 C4 C5 111.0(2) C3 C4 C5 110.7(2) O6 C4 H4A 108.9 C3 C4 H4A 108.9 C5 C4 H4A 108.9 O1 C5 N1 108.0(2) O1 C5 C4 110.1(2) N1 C5 C4 109.0(2) O1 C5 H5A 109.9 N1 C5 H5A 109.9 C4 C5 H5A 109.9 O3 C6 O2 122.9(3) O3 C6 C7 125.6(3) O2 C6 C7 111.5(3) C6 C7 H7A 109.5 C6 C7 H7B 109.5 H7A C7 H7B 109.5 C6 C7 H7C 109.5 H7A C7 H7C 109.5 H7B C7 H7C 109.5 O5 C8 O4 123.9(3) O5 C8 C9 125.9(3) O4 C8 C9 110.3(3) C8 C9 H9A 109.5 C8 C9 H9B 109.5 H9A C9 H9B 109.5 C8 C9 H9C 109.5 H9A C9 H9C 109.5 H9B C9 H9C 109.5 O7 C10 O6 123.2(3) O7 C10 C11 125.7(3) O6 C10 C11 111.1(3) C10 C11 H11A 109.5 C10 C11 H11B 109.5 H11A C11 H11B 109.5 C10 C11 H11C 109.5 H11A C11 H11C 109.5 H11B C11 H11C 109.5 N1 C12 N2 114.4(3) N1 C12 S1 125.5(2) N2 C12 S1 120.1(2) N3 C13 C14 120.9(3) N3 C13 H13A 119.6 C14 C13 H13A 119.6 C19 C14 C15 117.1(3) C19 C14 C13 122.7(3) C15 C14 C13 120.1(3) C16 C15 C14 121.2(4) C16 C15 H15A 119.4 C14 C15 H15A 119.4 C17 C16 C15 120.9(4) C17 C16 H16A 119.6 C15 C16 H16A 119.6 C16 C17 C18 118.7(4) C16 C17 H17A 120.7 C18 C17 H17A 120.7 C19 C18 C17 121.4(4) C19 C18 H18A 119.3 C17 C18 H18A 119.3 C18 C19 C14 120.8(3) C18 C19 H19A 119.6 C14 C19 H19A 119.6 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag C12 N2 N3 C13 179.5(3) ? C5 O1 C1 C2 58.3(3) ? C6 O2 C2 C3 150.6(3) yes C6 O2 C2 C1 -90.7(3) yes O1 C1 C2 O2 -177.3(2) ? O1 C1 C2 C3 -59.5(3) ? C8 O4 C3 C2 136.6(3) yes C8 O4 C3 C4 -106.3(3) yes O2 C2 C3 O4 -62.4(3) ? C1 C2 C3 O4 177.8(2) ? O2 C2 C3 C4 179.6(2) ? C1 C2 C3 C4 59.8(3) ? C10 O6 C4 C3 -133.5(3) yes C10 O6 C4 C5 104.8(3) yes O4 C3 C4 O6 62.1(3) ? C2 C3 C4 O6 180.0(2) ? O4 C3 C4 C5 -176.0(2) ? C2 C3 C4 C5 -58.1(3) ? C1 O1 C5 N1 -174.5(2) ? C1 O1 C5 C4 -55.6(3) ? C12 N1 C5 O1 -98.1(3) ? C12 N1 C5 C4 142.3(3) ? O6 C4 C5 O1 175.6(2) ? C3 C4 C5 O1 55.1(3) ? O6 C4 C5 N1 -66.2(3) ? C3 C4 C5 N1 173.4(2) ? C2 O2 C6 O3 7.1(5) ? C2 O2 C6 C7 -171.6(3) ? C3 O4 C8 O5 1.2(5) ? C3 O4 C8 C9 -178.8(3) ? C4 O6 C10 O7 -10.4(5) ? C4 O6 C10 C11 172.1(3) ? C5 N1 C12 N2 -179.5(3) yes C5 N1 C12 S1 0.0(5) yes N3 N2 C12 N1 -2.2(4) ? N3 N2 C12 S1 178.3(2) ? N2 N3 C13 C14 177.9(3) ? N3 C13 C14 C19 2.1(5) ? N3 C13 C14 C15 -174.2(3) ? C19 C14 C15 C16 -0.1(5) ? C13 C14 C15 C16 176.4(3) ? C14 C15 C16 C17 -0.4(6) ? C15 C16 C17 C18 0.3(7) ? C16 C17 C18 C19 0.3(6) ? C17 C18 C19 C14 -0.9(6) ? C15 C14 C19 C18 0.7(5) ? C13 C14 C19 C18 -175.7(3) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag N1 H1A N3 1_555 0.86 2.15 2.579(4) 110 yes C4 H4A S1 4_565 0.98 2.76 3.633(3) 148 yes C7 H7C O7 2_565 0.96 2.54 3.409(5) 151 yes C11 H11B S1 4_465 0.96 2.85 3.553(4) 131 yes _cod_database_code 2204316