#------------------------------------------------------------------------------ #$Date: 2011-01-02 20:00:31 +0000 (Sun, 02 Jan 2011) $ #$Revision: 5310 $ #$URL: svn://www.crystallography.net/cod/cif/2/2204321.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2204321 loop_ _publ_author_name 'Hong-Ping Xiao' 'Qian Shi' 'Ming-De Ye' _publ_section_title ; Di-\m-5-hydroxyisophthalato-bis[aqua(1,10-phenanthroline)copper(II)] trihydrate ; _journal_issue 10 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first m1498 _journal_page_last m1500 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac '[Cu2 (C8 H4 O5)2 (C12 H8 N2)2 (H2 O)2], 3H2 O' _chemical_formula_moiety 'C40 H28 Cu2 N4 O12, 3H2 O' _chemical_formula_sum 'C40 H34 Cu2 N4 O15' _chemical_formula_weight 937.79 _chemical_name_systematic ; Di-\m-5-hydroxyisophthalato-bis[aqua(1,10-phenanthroline)copper(II)] trihydrate ; _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 97.482(2) _cell_angle_beta 92.284(2) _cell_angle_gamma 101.475(2) _cell_formula_units_Z 1 _cell_length_a 7.2751(10) _cell_length_b 10.4797(14) _cell_length_c 12.7575(17) _cell_measurement_reflns_used 1209 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 23.33 _cell_measurement_theta_min 2.89 _cell_volume 942.9(2) _computing_cell_refinement 'SAINT (Bruker, 2002)' _computing_data_collection 'SMART (Bruker, 2002)' _computing_data_reduction SAINT _computing_molecular_graphics 'XP (Bruker, 2002)' _computing_publication_material 'SHELXTL (Bruker, 2002)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 298(2) _diffrn_measured_fraction_theta_full 0.992 _diffrn_measured_fraction_theta_max 0.992 _diffrn_measurement_device_type 'Bruker APEX area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0274 _diffrn_reflns_av_sigmaI/netI 0.0423 _diffrn_reflns_limit_h_max 8 _diffrn_reflns_limit_h_min -8 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -12 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 6956 _diffrn_reflns_theta_full 25.20 _diffrn_reflns_theta_max 25.20 _diffrn_reflns_theta_min 1.61 _diffrn_standards_decay_% 0 _diffrn_standards_interval_time 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 1.210 _exptl_absorpt_correction_T_max 0.8886 _exptl_absorpt_correction_T_min 0.7519 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Bruker, 2002)' _exptl_crystal_colour blue _exptl_crystal_density_diffrn 1.652 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 480 _exptl_crystal_size_max 0.25 _exptl_crystal_size_mid 0.16 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.914 _refine_diff_density_min -1.160 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.336 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 296 _refine_ls_number_reflns 3383 _refine_ls_number_restraints 6 _refine_ls_restrained_S_all 1.335 _refine_ls_R_factor_all 0.0845 _refine_ls_R_factor_gt 0.0838 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0361P)^2^+4.7073P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1720 _refine_ls_wR_factor_ref 0.1724 _reflns_number_gt 3353 _reflns_number_total 3383 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file cv6376.cif _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_absorpt_correction_type' value 'Multi-scan' changed to 'multi-scan' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2204321 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol Cu1 0.56165(10) 0.94671(7) 0.77592(6) 0.0210(2) Uani d . 1 Cu O1 0.8321(6) 1.0023(5) 0.6939(4) 0.0343(11) Uani d . 1 O O2 1.1211(6) 1.1180(4) 0.7375(4) 0.0398(12) Uani d . 1 O O3 1.3257(7) 0.9752(4) 1.0839(3) 0.0317(11) Uani d . 1 O O4 1.3084(7) 0.7613(4) 1.0883(4) 0.0372(12) Uani d . 1 O O5 0.9753(7) 0.5502(4) 0.7323(4) 0.0371(12) Uani d . 1 O H5 1.0170 0.4982 0.7647 0.056 Uiso calc R 1 H O6 0.4817(6) 1.1077(4) 0.7444(3) 0.0286(10) Uani d D 1 O H6B 0.3674 1.0981 0.7473 0.043 Uiso calc R 1 H H6C 0.5343 1.1533 0.7984 0.043 Uiso d RD 1 H O8 0.7893(16) 0.8366(9) 0.4906(7) 0.040(2) Uani d PD 0.50 O N1 0.5685(7) 0.7675(5) 0.8149(4) 0.0243(11) Uani d . 1 N N2 0.4239(7) 0.8399(5) 0.6453(4) 0.0244(11) Uani d . 1 N C1 0.6418(9) 0.7354(7) 0.9015(5) 0.0326(15) Uani d . 1 C H1 0.6987 0.8021 0.9551 0.039 Uiso calc R 1 H C2 0.6371(10) 0.6045(7) 0.9156(6) 0.0381(17) Uani d . 1 C H2 0.6893 0.5847 0.9776 0.046 Uiso calc R 1 H C3 0.5555(11) 0.5075(7) 0.8375(6) 0.0431(18) Uani d . 1 C H3 0.5527 0.4204 0.8461 0.052 Uiso calc R 1 H C4 0.4753(9) 0.5360(6) 0.7443(6) 0.0340(16) Uani d . 1 C C5 0.3827(11) 0.4412(7) 0.6579(6) 0.0441(19) Uani d . 1 C H5A 0.3749 0.3521 0.6611 0.053 Uiso calc R 1 H C6 0.3073(11) 0.4786(7) 0.5726(6) 0.0428(18) Uani d . 1 C H6A 0.2465 0.4146 0.5181 0.051 Uiso calc R 1 H C7 0.3173(9) 0.6146(7) 0.5627(5) 0.0332(15) Uani d . 1 C C8 0.2417(11) 0.6603(8) 0.4761(6) 0.0444(19) Uani d . 1 C H8 0.1790 0.6010 0.4192 0.053 Uiso calc R 1 H C9 0.2599(10) 0.7912(8) 0.4750(5) 0.0410(18) Uani d . 1 C H9 0.2115 0.8223 0.4170 0.049 Uiso calc R 1 H C10 0.3515(9) 0.8789(7) 0.5615(5) 0.0333(15) Uani d . 1 C H10 0.3621 0.9686 0.5601 0.040 Uiso calc R 1 H C11 0.4084(9) 0.7087(6) 0.6452(5) 0.0267(14) Uani d . 1 C C12 0.4873(8) 0.6696(6) 0.7367(5) 0.0234(13) Uani d . 1 C C13 0.9937(9) 1.0161(6) 0.7352(5) 0.0279(14) Uani d . 1 C C14 1.0433(8) 0.9042(6) 0.7871(5) 0.0229(13) Uani d . 1 C C15 1.1397(9) 0.9297(6) 0.8854(5) 0.0251(13) Uani d . 1 C H15 1.1789 1.0161 0.9182 0.030 Uiso calc R 1 H C16 1.1785(8) 0.8275(6) 0.9358(5) 0.0223(12) Uani d . 1 C C17 1.2784(9) 0.8555(6) 1.0440(5) 0.0251(13) Uani d . 1 C C18 1.1244(8) 0.6993(6) 0.8857(5) 0.0248(13) Uani d . 1 C H18 1.1510 0.6305 0.9189 0.030 Uiso calc R 1 H C19 1.0301(9) 0.6734(6) 0.7859(5) 0.0258(13) Uani d . 1 C C20 0.9855(9) 0.7759(6) 0.7379(5) 0.0259(13) Uani d . 1 C H20 0.9168 0.7583 0.6728 0.031 Uiso calc R 1 H H8B 0.847(18) 0.852(12) 0.440(6) 0.039 Uiso d PD 0.50 H H8C 0.794(19) 0.889(9) 0.541(6) 0.039 Uiso d PD 0.50 H O7 0.0422(9) 0.3563(5) 0.8358(5) 0.0556(16) Uani d D 1 O H7B 0.062(10) 0.293(5) 0.799(5) 0.03(2) Uiso d D 1 H H7C -0.060(6) 0.331(7) 0.858(6) 0.04(2) Uiso d D 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cu1 0.0225(4) 0.0163(4) 0.0236(4) 0.0029(3) -0.0021(3) 0.0035(3) O1 0.023(2) 0.041(3) 0.042(3) 0.005(2) 0.000(2) 0.017(2) O2 0.022(2) 0.027(3) 0.070(4) 0.000(2) -0.002(2) 0.019(2) O3 0.050(3) 0.021(2) 0.022(2) 0.007(2) -0.008(2) -0.0001(18) O4 0.049(3) 0.021(2) 0.040(3) 0.006(2) -0.013(2) 0.005(2) O5 0.050(3) 0.020(2) 0.037(3) 0.007(2) -0.006(2) -0.006(2) O6 0.028(2) 0.022(2) 0.036(3) 0.0056(18) -0.0068(19) 0.0055(19) O8 0.069(7) 0.028(5) 0.022(5) 0.007(5) 0.005(5) -0.001(4) N1 0.021(3) 0.026(3) 0.027(3) 0.003(2) 0.005(2) 0.006(2) N2 0.024(3) 0.023(3) 0.024(3) 0.000(2) 0.002(2) 0.002(2) C1 0.034(4) 0.036(4) 0.030(4) 0.005(3) 0.004(3) 0.012(3) C2 0.044(4) 0.043(4) 0.036(4) 0.020(3) 0.009(3) 0.021(3) C3 0.047(4) 0.033(4) 0.057(5) 0.017(3) 0.021(4) 0.017(4) C4 0.032(4) 0.027(4) 0.045(4) 0.008(3) 0.015(3) 0.007(3) C5 0.057(5) 0.024(4) 0.050(5) 0.007(3) 0.016(4) 0.001(3) C6 0.045(4) 0.033(4) 0.044(4) -0.001(3) 0.003(3) -0.005(3) C7 0.034(4) 0.032(4) 0.031(4) 0.004(3) 0.008(3) -0.001(3) C8 0.045(5) 0.044(5) 0.036(4) 0.001(4) -0.004(3) -0.009(3) C9 0.044(4) 0.057(5) 0.022(3) 0.009(4) -0.006(3) 0.006(3) C10 0.036(4) 0.030(4) 0.033(4) 0.006(3) 0.001(3) 0.005(3) C11 0.028(3) 0.020(3) 0.031(3) 0.004(3) 0.006(3) -0.001(3) C12 0.024(3) 0.019(3) 0.028(3) 0.006(2) 0.011(2) 0.000(2) C13 0.029(3) 0.031(3) 0.025(3) 0.011(3) 0.000(3) 0.003(3) C14 0.018(3) 0.021(3) 0.029(3) 0.003(2) 0.006(2) 0.003(2) C15 0.030(3) 0.020(3) 0.024(3) 0.005(3) 0.002(3) 0.000(2) C16 0.020(3) 0.022(3) 0.024(3) 0.004(2) 0.003(2) 0.002(2) C17 0.027(3) 0.025(3) 0.024(3) 0.008(3) 0.005(3) 0.002(3) C18 0.029(3) 0.019(3) 0.028(3) 0.005(3) 0.006(3) 0.003(2) C19 0.025(3) 0.020(3) 0.032(3) 0.005(2) 0.009(3) -0.001(3) C20 0.029(3) 0.027(3) 0.021(3) 0.005(3) 0.002(2) 0.002(3) O7 0.065(4) 0.027(3) 0.078(4) 0.009(3) 0.029(4) 0.011(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cu Cu 0.3201 1.2651 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag O3 Cu1 O6 2_777 . 94.36(18) yes O3 Cu1 N2 2_777 . 169.7(2) yes O6 Cu1 N2 . . 92.6(2) yes O3 Cu1 N1 2_777 . 89.20(19) yes O6 Cu1 N1 . . 164.33(19) yes N2 Cu1 N1 . . 82.1(2) yes O3 Cu1 O1 2_777 . 94.25(19) yes O6 Cu1 O1 . . 90.84(18) yes N2 Cu1 O1 . . 93.33(19) yes N1 Cu1 O1 . . 104.13(18) yes C13 O1 Cu1 . . 125.5(4) ? C17 O3 Cu1 . 2_777 129.8(4) ? C19 O5 H5 . . 109.5 ? Cu1 O6 H6B . . 109.5 ? Cu1 O6 H6C . . 94.6 ? H6B O6 H6C . . 109.6 ? H8B O8 H8C . . 122(6) ? C1 N1 C12 . . 118.4(6) ? C1 N1 Cu1 . . 129.5(5) ? C12 N1 Cu1 . . 112.1(4) ? C10 N2 C11 . . 117.7(5) ? C10 N2 Cu1 . . 129.4(4) ? C11 N2 Cu1 . . 112.9(4) ? N1 C1 C2 . . 122.3(7) ? N1 C1 H1 . . 118.8 ? C2 C1 H1 . . 118.8 ? C3 C2 C1 . . 119.0(7) ? C3 C2 H2 . . 120.5 ? C1 C2 H2 . . 120.5 ? C2 C3 C4 . . 121.1(7) ? C2 C3 H3 . . 119.5 ? C4 C3 H3 . . 119.5 ? C3 C4 C12 . . 116.1(7) ? C3 C4 C5 . . 125.6(7) ? C12 C4 C5 . . 118.3(7) ? C6 C5 C4 . . 121.0(7) ? C6 C5 H5A . . 119.5 ? C4 C5 H5A . . 119.5 ? C5 C6 C7 . . 121.9(7) ? C5 C6 H6A . . 119.0 ? C7 C6 H6A . . 119.0 ? C11 C7 C8 . . 117.0(6) ? C11 C7 C6 . . 118.1(6) ? C8 C7 C6 . . 124.9(7) ? C9 C8 C7 . . 119.9(7) ? C9 C8 H8 . . 120.0 ? C7 C8 H8 . . 120.0 ? C8 C9 C10 . . 119.5(7) ? C8 C9 H9 . . 120.3 ? C10 C9 H9 . . 120.3 ? N2 C10 C9 . . 122.6(6) ? N2 C10 H10 . . 118.7 ? C9 C10 H10 . . 118.7 ? N2 C11 C7 . . 123.3(6) ? N2 C11 C12 . . 116.4(5) ? C7 C11 C12 . . 120.3(6) ? N1 C12 C4 . . 123.1(6) ? N1 C12 C11 . . 116.5(5) ? C4 C12 C11 . . 120.3(6) ? O1 C13 O2 . . 124.5(6) ? O1 C13 C14 . . 118.4(6) ? O2 C13 C14 . . 117.0(5) ? C15 C14 C20 . . 119.9(6) ? C15 C14 C13 . . 120.1(5) ? C20 C14 C13 . . 120.0(6) ? C14 C15 C16 . . 120.6(6) ? C14 C15 H15 . . 119.7 ? C16 C15 H15 . . 119.7 ? C18 C16 C15 . . 119.6(6) ? C18 C16 C17 . . 120.0(5) ? C15 C16 C17 . . 120.3(5) ? O4 C17 O3 . . 124.8(6) ? O4 C17 C16 . . 118.9(5) ? O3 C17 C16 . . 116.3(5) ? C16 C18 C19 . . 120.0(6) ? C16 C18 H18 . . 120.0 ? C19 C18 H18 . . 120.0 ? O5 C19 C20 . . 117.3(6) ? O5 C19 C18 . . 122.8(6) ? C20 C19 C18 . . 119.9(6) ? C14 C20 C19 . . 120.0(6) ? C14 C20 H20 . . 120.0 ? C19 C20 H20 . . 120.0 ? H7B O7 H7C . . 104(8) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Cu1 O3 2_777 1.942(4) yes Cu1 O6 . 1.974(4) yes Cu1 N2 . 1.992(5) yes Cu1 N1 . 2.013(5) yes Cu1 O1 . 2.274(5) yes O1 C13 . 1.243(8) ? O2 C13 . 1.263(8) ? O3 C17 . 1.265(7) ? O3 Cu1 2_777 1.942(4) ? O4 C17 . 1.250(7) ? O5 C19 . 1.355(7) ? O5 H5 . 0.8200 ? O6 H6B . 0.8200 ? O6 H6C . 0.8185 ? O8 H8B . 0.80(3) ? O8 H8C . 0.79(3) ? N1 C1 . 1.319(8) ? N1 C12 . 1.356(8) ? N2 C10 . 1.321(8) ? N2 C11 . 1.357(8) ? C1 C2 . 1.400(9) ? C1 H1 . 0.9300 ? C2 C3 . 1.351(11) ? C2 H2 . 0.9300 ? C3 C4 . 1.397(11) ? C3 H3 . 0.9300 ? C4 C12 . 1.402(9) ? C4 C5 . 1.430(10) ? C5 C6 . 1.337(11) ? C5 H5A . 0.9300 ? C6 C7 . 1.434(10) ? C6 H6A . 0.9300 ? C7 C11 . 1.391(9) ? C7 C8 . 1.396(10) ? C8 C9 . 1.353(11) ? C8 H8 . 0.9300 ? C9 C10 . 1.393(9) ? C9 H9 . 0.9300 ? C10 H10 . 0.9300 ? C11 C12 . 1.423(9) ? C13 C14 . 1.515(9) ? C14 C15 . 1.380(8) ? C14 C20 . 1.383(8) ? C15 C16 . 1.387(8) ? C15 H15 . 0.9300 ? C16 C18 . 1.384(8) ? C16 C17 . 1.500(8) ? C18 C19 . 1.390(9) ? C18 H18 . 0.9300 ? C19 C20 . 1.389(9) ? C20 H20 . 0.9300 ? O7 H7B . 0.81(3) ? O7 H7C . 0.81(3) ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O5 H5 O7 1_655 0.82 1.88 2.673(8) 164 O6 H6B O2 1_455 0.82 1.85 2.645(6) 164 O6 H6C O4 2_777 0.82 1.82 2.630(6) 168 O6 H6C O3 2_777 0.82 2.46 2.872(6) 112 O8 H8B O2 2_776 0.80(3) 2.35(7) 3.084(11) 155(14) O8 H8C O1 . 0.79(3) 2.12(4) 2.896(10) 168(15) O7 H7B O2 1_445 0.81(3) 2.03(3) 2.820(8) 167(8) O7 H7C O4 2_667 0.81(3) 2.06(3) 2.867(8) 171(7)