#------------------------------------------------------------------------------ #$Date: 2011-09-17 21:27:16 +0100 (Sat, 17 Sep 2011) $ #$Revision: 26029 $ #$URL: svn://www.crystallography.net/cod/cif/2/2204461.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2204461 loop_ _publ_author_name 'Hu, Rui-Feng' 'Wen, Yi-Hang' 'Zhang, Jian' 'Li, Zhao-Ji' 'Yao, Yuan-Gen' _publ_section_title ; Hemi(4,4'-bipyridylium) hydrogen 2,2'-dithiodibenzoate monohydrate ; _journal_issue 11 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first o2029 _journal_page_last o2031 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C10 H10 N2 2+ , 2C14 H9 O4 S2 - , 2H2 O' _chemical_formula_moiety 'C10 H10 N2 2+ , 2C14 H9 O4 S2 - , 2H2 O' _chemical_formula_sum 'C38 H32 N2 O10 S4' _chemical_formula_weight 804.90 _chemical_name_systematic ; Hemi(4,4'-bipyridylium) hydrogen 2,2'-dithiodibenzoate monohydrate ; _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 64.80(2) _cell_angle_beta 82.26(3) _cell_angle_gamma 77.32(3) _cell_formula_units_Z 1 _cell_length_a 7.913(2) _cell_length_b 11.192(2) _cell_length_c 11.438(3) _cell_measurement_reflns_used 2035 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 25.00 _cell_measurement_theta_min 1.97 _cell_volume 893.3(4) _computing_cell_refinement 'SMART and SAINT (Siemens, 1994)' _computing_data_collection 'SMART (Siemens, 1996)' _computing_data_reduction 'XPREP in SHELXTL (Siemens, 1994)' _computing_molecular_graphics SHELXTL _computing_publication_material SHELXTL _computing_structure_refinement SHELXTL _computing_structure_solution SHELXTL _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.994 _diffrn_measured_fraction_theta_max 0.994 _diffrn_measurement_device_type 'Bruker P4' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0370 _diffrn_reflns_av_sigmaI/netI 0.0570 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min -13 _diffrn_reflns_limit_l_max 13 _diffrn_reflns_limit_l_min -13 _diffrn_reflns_number 5746 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 1.97 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 0 _diffrn_standards_interval_time 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.330 _exptl_absorpt_correction_T_max 0.984 _exptl_absorpt_correction_T_min 0.961 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 1996)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.496 _exptl_crystal_density_meas 'not measured' _exptl_crystal_density_method 'not measured' _exptl_crystal_description Prism _exptl_crystal_F_000 418 _exptl_crystal_size_max 0.40 _exptl_crystal_size_mid 0.10 _exptl_crystal_size_min 0.05 _refine_diff_density_max 0.332 _refine_diff_density_min -0.379 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.156 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 244 _refine_ls_number_reflns 3140 _refine_ls_number_restraints 3 _refine_ls_restrained_S_all 1.156 _refine_ls_R_factor_gt 0.0579 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0812P)^2^+0.5264P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1459 _refine_ls_wR_factor_ref 0.1860 _reflns_number_gt 2300 _reflns_number_total 3140 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file ci6457.cif _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2204461 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol S1 0.51749(14) 0.19868(10) 0.26432(10) 0.0457(3) Uani d . 1 S S2 0.62103(14) 0.00481(10) 0.28699(11) 0.0463(3) Uani d . 1 S O1 0.1382(4) 0.5754(3) 0.1103(3) 0.0694(10) Uani d . 1 O H1 0.0922 0.5964 0.1692 0.104 Uiso calc R 1 H O2 0.3007(4) 0.4177(3) 0.2676(3) 0.0616(9) Uani d . 1 O O3 0.9871(4) -0.3504(3) 0.2877(3) 0.0580(9) Uani d . 1 O O4 0.7378(4) -0.2463(3) 0.3422(3) 0.0557(8) Uani d . 1 O C1 0.4429(5) 0.2827(4) 0.1024(4) 0.0397(9) Uani d . 1 C C2 0.5041(5) 0.2291(4) 0.0112(4) 0.0456(10) Uani d . 1 C H2 0.5850 0.1497 0.0342 0.055 Uiso calc R 1 H C3 0.4454(6) 0.2928(5) -0.1127(4) 0.0520(11) Uani d . 1 C H3 0.4843 0.2547 -0.1717 0.062 Uiso calc R 1 H C4 0.3306(6) 0.4115(5) -0.1491(5) 0.0585(13) Uani d . 1 C H4 0.2931 0.4545 -0.2332 0.070 Uiso calc R 1 H C5 0.2704(6) 0.4676(4) -0.0622(4) 0.0495(11) Uani d . 1 C H5 0.1923 0.5485 -0.0880 0.059 Uiso calc R 1 H C6 0.3249(5) 0.4048(4) 0.0646(4) 0.0386(9) Uani d . 1 C C7 0.2546(5) 0.4657(4) 0.1571(4) 0.0437(10) Uani d . 1 C C8 0.8397(5) 0.0074(4) 0.2184(4) 0.0366(9) Uani d . 1 C C9 0.9021(5) 0.1276(4) 0.1585(4) 0.0431(10) Uani d . 1 C H9 0.8314 0.2075 0.1543 0.052 Uiso calc R 1 H C10 1.0703(5) 0.1274(4) 0.1052(4) 0.0503(11) Uani d . 1 C H10 1.1131 0.2073 0.0671 0.060 Uiso calc R 1 H C11 1.1737(6) 0.0112(5) 0.1081(5) 0.0528(11) Uani d . 1 C H11 1.2857 0.0127 0.0712 0.063 Uiso calc R 1 H C12 1.1128(5) -0.1081(4) 0.1654(4) 0.0476(10) Uani d . 1 C H12 1.1843 -0.1868 0.1672 0.057 Uiso calc R 1 H C13 0.9447(5) -0.1121(4) 0.2209(4) 0.0364(9) Uani d . 1 C C14 0.8865(5) -0.2458(4) 0.2869(4) 0.0409(10) Uani d . 1 C N1 0.2185(5) 0.6895(3) 0.5036(3) 0.0488(9) Uani d . 1 N H1A 0.2715 0.6138 0.5033 0.059 Uiso calc R 1 H C15 0.2997(7) 0.7938(5) 0.4564(5) 0.0588(12) Uani d . 1 C H15 0.4138 0.7843 0.4239 0.071 Uiso calc R 1 H C16 0.2166(6) 0.9155(4) 0.4554(5) 0.0519(11) Uani d . 1 C H16 0.2759 0.9871 0.4225 0.062 Uiso calc R 1 H C17 0.0479(5) 0.9341(4) 0.5017(4) 0.0404(9) Uani d . 1 C C18 -0.0310(6) 0.8216(4) 0.5521(4) 0.0486(11) Uani d . 1 C H18 -0.1442 0.8282 0.5868 0.058 Uiso calc R 1 H C19 0.0550(6) 0.7015(4) 0.5516(5) 0.0498(11) Uani d . 1 C H19 -0.0006 0.6279 0.5848 0.060 Uiso calc R 1 H O1W 0.3367(4) 0.4652(3) 0.4780(3) 0.0578(8) Uani d D 1 O H1WA 0.3027 0.4010 0.5415 0.087 Uiso d RD 1 H H1WB 0.3037 0.4700 0.4094 0.087 Uiso d RD 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 0.0507(7) 0.0354(6) 0.0443(6) 0.0085(5) -0.0012(5) -0.0180(4) S2 0.0425(6) 0.0328(5) 0.0545(7) 0.0037(4) 0.0051(5) -0.0166(5) O1 0.073(2) 0.053(2) 0.073(2) 0.0313(17) -0.0172(19) -0.0329(17) O2 0.072(2) 0.0484(18) 0.059(2) 0.0147(16) -0.0054(17) -0.0274(16) O3 0.058(2) 0.0372(16) 0.074(2) 0.0101(14) 0.0001(17) -0.0283(15) O4 0.0499(19) 0.0358(16) 0.076(2) 0.0007(14) 0.0069(16) -0.0242(15) C1 0.034(2) 0.037(2) 0.047(2) -0.0004(17) -0.0012(18) -0.0195(17) C2 0.040(2) 0.046(2) 0.054(3) 0.0019(19) 0.000(2) -0.029(2) C3 0.045(2) 0.066(3) 0.048(3) -0.007(2) 0.001(2) -0.029(2) C4 0.056(3) 0.064(3) 0.051(3) -0.001(2) -0.012(2) -0.021(2) C5 0.049(3) 0.039(2) 0.054(3) 0.0013(19) -0.011(2) -0.0153(19) C6 0.033(2) 0.033(2) 0.051(2) -0.0046(16) 0.0008(18) -0.0199(17) C7 0.042(2) 0.031(2) 0.057(3) -0.0005(17) -0.001(2) -0.0201(19) C8 0.036(2) 0.0299(19) 0.039(2) 0.0025(16) -0.0049(17) -0.0129(16) C9 0.041(2) 0.031(2) 0.051(2) -0.0008(17) -0.0042(19) -0.0132(17) C10 0.045(2) 0.047(2) 0.058(3) -0.018(2) 0.003(2) -0.017(2) C11 0.037(2) 0.057(3) 0.061(3) -0.011(2) 0.008(2) -0.023(2) C12 0.037(2) 0.048(2) 0.059(3) 0.0024(19) 0.000(2) -0.029(2) C13 0.032(2) 0.039(2) 0.038(2) 0.0013(16) -0.0049(16) -0.0184(16) C14 0.043(2) 0.034(2) 0.046(2) 0.0061(18) -0.0078(19) -0.0204(17) N1 0.056(2) 0.0290(17) 0.054(2) -0.0012(16) -0.0017(18) -0.0131(15) C15 0.057(3) 0.046(3) 0.074(3) 0.003(2) -0.001(2) -0.031(2) C16 0.053(3) 0.040(2) 0.062(3) -0.004(2) 0.000(2) -0.024(2) C17 0.050(2) 0.036(2) 0.034(2) -0.0012(18) -0.0079(18) -0.0151(16) C18 0.045(2) 0.032(2) 0.062(3) -0.0061(18) 0.005(2) -0.0143(19) C19 0.045(2) 0.037(2) 0.064(3) -0.0088(19) -0.002(2) -0.016(2) O1W 0.067(2) 0.0409(17) 0.068(2) -0.0095(15) -0.0021(17) -0.0250(15) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag C1 S1 S2 . 105.11(14) yes C8 S2 S1 . 106.17(13) yes C7 O1 H1 . 109.5 no C2 C1 C6 . 118.8(4) no C2 C1 S1 . 120.6(3) no C6 C1 S1 . 120.6(3) no C3 C2 C1 . 120.6(4) no C3 C2 H2 . 119.7 no C1 C2 H2 . 119.7 no C4 C3 C2 . 120.4(4) no C4 C3 H3 . 119.8 no C2 C3 H3 . 119.8 no C3 C4 C5 . 120.3(4) no C3 C4 H4 . 119.9 no C5 C4 H4 . 119.9 no C4 C5 C6 . 120.8(4) no C4 C5 H5 . 119.6 no C6 C5 H5 . 119.6 no C5 C6 C1 . 119.1(4) no C5 C6 C7 . 119.7(4) no C1 C6 C7 . 121.2(4) no O2 C7 O1 . 122.9(4) no O2 C7 C6 . 122.7(4) no O1 C7 C6 . 114.4(4) no C9 C8 C13 . 120.0(4) no C9 C8 S2 . 120.6(3) no C13 C8 S2 . 119.4(3) no C10 C9 C8 . 119.6(4) no C10 C9 H9 . 120.2 no C8 C9 H9 . 120.2 no C11 C10 C9 . 120.7(4) no C11 C10 H10 . 119.7 no C9 C10 H10 . 119.7 no C10 C11 C12 . 120.3(4) no C10 C11 H11 . 119.8 no C12 C11 H11 . 119.8 no C11 C12 C13 . 120.6(4) no C11 C12 H12 . 119.7 no C13 C12 H12 . 119.7 no C12 C13 C8 . 118.8(4) no C12 C13 C14 . 118.6(4) no C8 C13 C14 . 122.6(4) no O4 C14 O3 . 123.3(4) no O4 C14 C13 . 116.7(3) no O3 C14 C13 . 120.0(4) no C15 N1 C19 . 120.4(4) no C15 N1 H1A . 119.8 no C19 N1 H1A . 119.8 no N1 C15 C16 . 120.5(5) no N1 C15 H15 . 119.8 no C16 C15 H15 . 119.8 no C15 C16 C17 . 121.6(4) no C15 C16 H16 . 119.2 no C17 C16 H16 . 119.2 no C16 C17 C18 . 115.9(4) no C16 C17 C17 2_576 123.0(5) no C18 C17 C17 2_576 121.1(5) no C19 C18 C17 . 121.2(4) no C19 C18 H18 . 119.4 no C17 C18 H18 . 119.4 no N1 C19 C18 . 120.4(4) no N1 C19 H19 . 119.8 no C18 C19 H19 . 119.8 no H1WA O1W H1WB . 110.1 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag S1 C1 . 1.798(4) yes S1 S2 . 2.0602(15) yes S2 C8 . 1.802(4) yes O1 C7 . 1.312(5) yes O1 H1 . 0.82 no O2 C7 . 1.216(5) yes O3 C14 . 1.260(5) yes O4 C14 . 1.259(5) yes C1 C2 . 1.397(6) no C1 C6 . 1.404(5) no C2 C3 . 1.379(6) no C2 H2 . 0.93 no C3 C4 . 1.366(6) no C3 H3 . 0.93 no C4 C5 . 1.372(7) no C4 H4 . 0.93 no C5 C6 . 1.396(6) no C5 H5 . 0.93 no C6 C7 . 1.478(6) no C8 C9 . 1.392(5) no C8 C13 . 1.402(5) no C9 C10 . 1.387(6) no C9 H9 . 0.93 no C10 C11 . 1.366(6) no C10 H10 . 0.93 no C11 C12 . 1.378(6) no C11 H11 . 0.93 no C12 C13 . 1.395(6) no C12 H12 . 0.93 no C13 C14 . 1.506(6) no N1 C15 . 1.329(6) yes N1 C19 . 1.337(6) yes N1 H1A . 0.86 no C15 C16 . 1.372(6) yes C15 H15 . 0.93 no C16 C17 . 1.374(6) yes C16 H16 . 0.93 no C17 C18 . 1.392(6) yes C17 C17 2_576 1.490(8) yes C18 C19 . 1.369(6) yes C18 H18 . 0.93 no C19 H19 . 0.93 no O1W H1WA . 0.84 no O1W H1WB . 0.84 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA O1 H1 O3 1_465 0.82 1.75 2.566(5) 177 O1W H1WA O4 2_656 0.84 1.74 2.569(4) 167 N1 H1A O1W . 0.86 1.76 2.605(5) 165 O1W H1WB O2 . 0.84 1.95 2.738(5) 157 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag C1 S1 S2 C8 . . 83.48(19) yes S2 S1 C1 C2 . . -18.4(4) yes S2 S1 C1 C6 . . 162.9(3) yes C6 C1 C2 C3 . . -2.0(6) no S1 C1 C2 C3 . . 179.3(3) no C1 C2 C3 C4 . . 2.0(7) no C2 C3 C4 C5 . . -1.0(7) no C3 C4 C5 C6 . . 0.0(7) no C4 C5 C6 C1 . . 0.0(6) no C4 C5 C6 C7 . . -178.5(4) no C2 C1 C6 C5 . . 1.0(6) no S1 C1 C6 C5 . . 179.7(3) no C2 C1 C6 C7 . . 179.5(4) no S1 C1 C6 C7 . . -1.8(5) no C5 C6 C7 O2 . . -177.9(4) no C1 C6 C7 O2 . . 3.6(6) no C5 C6 C7 O1 . . 2.3(6) no C1 C6 C7 O1 . . -176.2(4) no S1 S2 C8 C9 . . -3.3(3) no S1 S2 C8 C13 . . 179.3(3) no C13 C8 C9 C10 . . -2.0(6) no S2 C8 C9 C10 . . -179.3(3) no C8 C9 C10 C11 . . 1.6(7) no C9 C10 C11 C12 . . -0.7(7) no C10 C11 C12 C13 . . 0.2(7) no C11 C12 C13 C8 . . -0.7(6) no C11 C12 C13 C14 . . -177.7(4) no C9 C8 C13 C12 . . 1.6(6) no S2 C8 C13 C12 . . 178.9(3) no C9 C8 C13 C14 . . 178.5(4) no S2 C8 C13 C14 . . -4.2(5) no C12 C13 C14 O4 . . 176.0(4) no C8 C13 C14 O4 . . -0.9(6) no C12 C13 C14 O3 . . -2.1(6) no C8 C13 C14 O3 . . -179.1(4) no C19 N1 C15 C16 . . -0.5(7) no N1 C15 C16 C17 . . -0.4(7) no C15 C16 C17 C18 . . 1.4(7) no C15 C16 C17 C17 . 2_576 -178.1(5) no C16 C17 C18 C19 . . -1.6(6) no C17 C17 C18 C19 2_576 . 177.9(5) no C15 N1 C19 C18 . . 0.3(7) no C17 C18 C19 N1 . . 0.8(7) no