#------------------------------------------------------------------------------ #$Date: 2011-09-17 21:27:16 +0100 (Sat, 17 Sep 2011) $ #$Revision: 26029 $ #$URL: svn://www.crystallography.net/cod/cif/2/2204474.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2204474 loop_ _publ_author_name 'Weaver, Travis D.' 'Norris, Peter' 'Zeller, Matthias' _publ_section_title ; 6-Deoxy-1,2:3,4-di-O-isopropylidene-\a-D-galacto-heptodialdo-1,5- pyranose diphenyl dithioacetal ; _journal_issue 11 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first o2113 _journal_page_last o2114 _journal_volume 60 _journal_year 2004 _chemical_formula_iupac 'C25 H30 O5 S2' _chemical_formula_moiety 'C25 H30 O5 S2' _chemical_formula_sum 'C25 H30 O5 S2' _chemical_formula_weight 474.61 _chemical_name_systematic ; 6-Deoxy-1,2:3,4-di-O-isopropylidene-\a-D-galacto-heptodialdo-1,5- pyranose diphenyl dithioacetal ; _symmetry_cell_setting orthorhombic _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 9.0880(4) _cell_length_b 10.2194(5) _cell_length_c 26.5100(13) _cell_measurement_reflns_used 11023 _cell_measurement_temperature 100(2) _cell_measurement_theta_max 31.72 _cell_measurement_theta_min 2.72 _cell_volume 2462.1(2) _computing_cell_refinement 'SAINT-Plus (Bruker, 2003)' _computing_data_collection 'SMART (Bruker, 1997-2002)' _computing_data_reduction SAINT-Plus _computing_molecular_graphics SHELXTL _computing_publication_material SHELXTL _computing_structure_refinement SHELXTL _computing_structure_solution 'SHELXTL (Bruker, 2000)' _diffrn_ambient_temperature 100(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Bruker SMART APEX CCD' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0388 _diffrn_reflns_av_sigmaI/netI 0.0286 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_h_min -12 _diffrn_reflns_limit_k_max 10 _diffrn_reflns_limit_k_min -13 _diffrn_reflns_limit_l_max 34 _diffrn_reflns_limit_l_min -35 _diffrn_reflns_number 29848 _diffrn_reflns_theta_full 28.28 _diffrn_reflns_theta_max 28.28 _diffrn_reflns_theta_min 1.54 _exptl_absorpt_coefficient_mu 0.249 _exptl_absorpt_correction_T_max 0.97 _exptl_absorpt_correction_T_min 0.70238 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS in SAINT-Plus; Bruker, 1997-1999)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.280 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 1008 _exptl_crystal_size_max 0.43 _exptl_crystal_size_mid 0.25 _exptl_crystal_size_min 0.125 _refine_diff_density_max 0.404 _refine_diff_density_min -0.238 _refine_ls_abs_structure_details '(Flack, 1983)' _refine_ls_abs_structure_Flack 0.04(7) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.367 _refine_ls_hydrogen_treatment refxyz _refine_ls_matrix_type full _refine_ls_number_parameters 347 _refine_ls_number_reflns 6099 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.367 _refine_ls_R_factor_all 0.0455 _refine_ls_R_factor_gt 0.0452 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.106P)^2^+0.6861P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1065 _refine_ls_wR_factor_ref 0.1066 _reflns_number_gt 6072 _reflns_number_total 6099 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file cv6386.cif _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. '_exptl_absorpt_correction_type' value 'multi scan' changed to 'multi-scan' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2204474 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol C1 0.2855(2) 0.0913(2) 0.90422(8) 0.0162(4) Uani d . 1 C C2 0.3619(2) 0.1739(2) 0.94474(8) 0.0156(4) Uani d . 1 C C3 0.3155(2) 0.3162(2) 0.94497(9) 0.0170(4) Uani d . 1 C C4 0.1481(2) 0.3371(2) 0.93886(8) 0.0160(4) Uani d . 1 C C5 0.0691(2) 0.2135(2) 0.92124(8) 0.0155(4) Uani d . 1 C C6 -0.0801(2) 0.2428(2) 0.89773(9) 0.0153(4) Uani d . 1 C C7 -0.1529(2) 0.1220(2) 0.87451(8) 0.0151(4) Uani d . 1 C C8 0.2935(3) -0.0212(2) 0.98137(8) 0.0181(4) Uani d . 1 C C9 0.1698(3) -0.0708(3) 1.01396(11) 0.0273(5) Uani d . 1 C H9A 0.0787 -0.0250 1.0051 0.041 Uiso calc R 1 H H9B 0.1932 -0.0547 1.0495 0.041 Uiso calc R 1 H H9C 0.1571 -0.1650 1.0085 0.041 Uiso calc R 1 H C10 0.4364(3) -0.0950(2) 0.98963(9) 0.0201(4) Uani d . 1 C H10A 0.4686 -0.0836 1.0246 0.030 Uiso calc R 1 H H10B 0.5120 -0.0608 0.9668 0.030 Uiso calc R 1 H H10C 0.4209 -0.1882 0.9828 0.030 Uiso calc R 1 H C11 0.2817(3) 0.4792(2) 0.88708(9) 0.0204(5) Uani d . 1 C C12 0.2881(3) 0.4923(3) 0.83038(10) 0.0318(6) Uani d . 1 C H12A 0.2233 0.5637 0.8196 0.048 Uiso calc R 1 H H12B 0.2557 0.4103 0.8148 0.048 Uiso calc R 1 H H12C 0.3893 0.5114 0.8200 0.048 Uiso calc R 1 H C13 0.3182(3) 0.6051(2) 0.91528(10) 0.0253(5) Uani d . 1 C H13A 0.3118 0.5895 0.9517 0.038 Uiso calc R 1 H H13B 0.2480 0.6735 0.9057 0.038 Uiso calc R 1 H H13C 0.4182 0.6331 0.9066 0.038 Uiso calc R 1 H C21 -0.2175(3) -0.1405(2) 0.89023(8) 0.0194(4) Uani d . 1 C C22 -0.0970(3) -0.2232(3) 0.89085(10) 0.0263(5) Uani d . 1 C C23 -0.1023(3) -0.3406(3) 0.86469(11) 0.0340(6) Uani d . 1 C C24 -0.2251(4) -0.3737(3) 0.83709(11) 0.0354(6) Uani d . 1 C C25 -0.3448(3) -0.2901(3) 0.83609(12) 0.0336(6) Uani d . 1 C C26 -0.3426(3) -0.1743(3) 0.86321(10) 0.0266(5) Uani d . 1 C C31 -0.2557(3) 0.2568(2) 0.78830(9) 0.0197(5) Uani d . 1 C C32 -0.3627(3) 0.3295(3) 0.76297(11) 0.0309(6) Uani d . 1 C H32 -0.452(4) 0.325(4) 0.7744(13) 0.037 Uiso d . 1 H C33 -0.3231(4) 0.4058(4) 0.72231(13) 0.0458(9) Uani d . 1 C H33 -0.393(4) 0.458(4) 0.7080(16) 0.055 Uiso d . 1 H C34 -0.1784(4) 0.4126(4) 0.70638(13) 0.0475(9) Uani d . 1 C H34 -0.156(5) 0.466(4) 0.6792(15) 0.057 Uiso d . 1 H C35 -0.0713(3) 0.3412(3) 0.73113(10) 0.0340(6) Uani d . 1 C H35 0.027(4) 0.345(4) 0.7183(13) 0.041 Uiso d . 1 H C36 -0.1101(3) 0.2621(3) 0.77187(9) 0.0233(5) Uani d . 1 C H36 -0.035(4) 0.209(3) 0.7876(12) 0.028 Uiso d . 1 H H1 0.344(4) 0.072(3) 0.8784(12) 0.028 Uiso d . 1 H H2 0.468(3) 0.164(3) 0.9422(12) 0.028 Uiso d . 1 H H3 0.351(3) 0.354(3) 0.9757(12) 0.028 Uiso d . 1 H H4 0.105(3) 0.370(3) 0.9693(12) 0.028 Uiso d . 1 H H5 0.062(3) 0.159(3) 0.9477(12) 0.028 Uiso d . 1 H H7 -0.084(3) 0.074(3) 0.8543(11) 0.028 Uiso d . 1 H H22 -0.015(4) -0.201(3) 0.9084(12) 0.028 Uiso d . 1 H H23 -0.025(4) -0.398(3) 0.8649(11) 0.028 Uiso d . 1 H H24 -0.227(4) -0.443(3) 0.8178(11) 0.028 Uiso d . 1 H H25 -0.422(4) -0.309(3) 0.8179(12) 0.028 Uiso d . 1 H H26 -0.425(4) -0.119(3) 0.8636(11) 0.028 Uiso d . 1 H H6A -0.065(3) 0.302(3) 0.8692(12) 0.028 Uiso d . 1 H H6B -0.141(3) 0.283(3) 0.9224(12) 0.028 Uiso d . 1 H O1 0.15783(17) 0.14869(15) 0.88402(6) 0.0159(3) Uani d . 1 O O2 0.25195(18) -0.02785(15) 0.92904(6) 0.0206(3) Uani d . 1 O O3 0.31337(19) 0.11639(15) 0.99096(6) 0.0176(3) Uani d . 1 O O4 0.37766(19) 0.37605(16) 0.90170(7) 0.0214(4) Uani d . 1 O O5 0.13749(18) 0.43632(16) 0.90108(7) 0.0216(4) Uani d . 1 O S1 -0.31891(6) 0.16211(6) 0.83969(2) 0.02087(12) Uani d . 1 S S2 -0.20971(6) 0.00966(6) 0.92426(2) 0.01927(12) Uani d . 1 S loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 0.0149(10) 0.0171(10) 0.0166(9) -0.0003(8) -0.0001(8) -0.0034(8) C2 0.0138(9) 0.0165(10) 0.0164(10) -0.0009(8) -0.0014(8) -0.0025(8) C3 0.0149(10) 0.0135(9) 0.0226(10) -0.0021(8) -0.0014(8) -0.0033(8) C4 0.0137(10) 0.0155(10) 0.0187(10) -0.0003(8) -0.0007(7) -0.0025(8) C5 0.0186(10) 0.0151(9) 0.0129(9) -0.0024(8) 0.0017(8) -0.0006(8) C6 0.0150(10) 0.0135(10) 0.0174(10) -0.0026(8) 0.0005(8) 0.0012(8) C7 0.0120(10) 0.0176(10) 0.0157(10) -0.0017(8) -0.0011(8) 0.0037(8) C8 0.0185(10) 0.0157(10) 0.0202(10) -0.0001(8) -0.0033(8) 0.0007(8) C9 0.0182(11) 0.0276(12) 0.0360(13) 0.0004(10) 0.0016(10) 0.0085(11) C10 0.0171(10) 0.0176(10) 0.0257(11) 0.0009(9) -0.0024(9) 0.0009(9) C11 0.0200(11) 0.0161(10) 0.0251(11) -0.0056(9) 0.0001(9) 0.0006(9) C12 0.0399(15) 0.0276(13) 0.0278(13) -0.0041(13) 0.0013(11) 0.0036(10) C13 0.0228(12) 0.0172(10) 0.0358(13) -0.0039(9) -0.0017(10) -0.0009(10) C21 0.0237(11) 0.0154(10) 0.0192(10) -0.0041(9) 0.0004(9) 0.0041(8) C22 0.0254(13) 0.0291(13) 0.0242(12) 0.0008(10) -0.0041(10) 0.0056(10) C23 0.0396(16) 0.0277(14) 0.0349(15) 0.0118(13) 0.0003(12) 0.0031(12) C24 0.0543(18) 0.0206(12) 0.0314(13) -0.0062(12) 0.0018(14) 0.0002(11) C25 0.0339(15) 0.0281(13) 0.0387(15) -0.0106(12) -0.0086(13) -0.0026(12) C26 0.0195(12) 0.0254(12) 0.0349(13) -0.0040(10) -0.0047(10) -0.0007(11) C31 0.0233(12) 0.0179(10) 0.0178(10) -0.0042(9) -0.0030(9) 0.0017(8) C32 0.0223(12) 0.0312(14) 0.0391(15) -0.0053(11) -0.0095(11) 0.0136(12) C33 0.0394(17) 0.052(2) 0.0465(18) -0.0069(16) -0.0188(15) 0.0309(16) C34 0.0438(19) 0.060(2) 0.0391(16) -0.0202(18) -0.0137(15) 0.0305(16) C35 0.0335(14) 0.0457(17) 0.0228(12) -0.0079(14) 0.0003(11) 0.0086(12) C36 0.0266(13) 0.0266(13) 0.0167(11) -0.0013(10) -0.0002(9) 0.0027(10) O1 0.0154(7) 0.0170(7) 0.0154(7) 0.0011(6) -0.0005(6) -0.0039(6) O2 0.0244(8) 0.0148(7) 0.0226(8) -0.0012(6) -0.0076(7) -0.0019(6) O3 0.0199(8) 0.0157(7) 0.0173(7) 0.0005(6) -0.0001(6) -0.0016(6) O4 0.0192(8) 0.0173(8) 0.0276(9) -0.0021(6) 0.0024(7) 0.0021(7) O5 0.0170(8) 0.0172(8) 0.0307(9) -0.0020(6) -0.0038(7) 0.0075(7) S1 0.0135(2) 0.0267(3) 0.0224(3) -0.0034(2) -0.0019(2) 0.0063(2) S2 0.0215(3) 0.0197(3) 0.0166(2) -0.0055(2) 0.0011(2) 0.0025(2) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O1 C1 O2 110.96(18) O1 C1 C2 114.27(18) O2 C1 C2 104.20(17) O1 C1 H1 107(2) O2 C1 H1 107(2) C2 C1 H1 113(2) O3 C2 C3 107.78(18) O3 C2 C1 103.57(17) C3 C2 C1 113.92(18) O3 C2 H2 108.7(19) C3 C2 H2 112(2) C1 C2 H2 110.1(19) O4 C3 C2 107.45(18) O4 C3 C4 104.37(18) C2 C3 C4 114.01(18) O4 C3 H3 112.3(19) C2 C3 H3 107.2(19) C4 C3 H3 111.6(19) O5 C4 C5 109.96(18) O5 C4 C3 103.77(17) C5 C4 C3 112.36(19) O5 C4 H4 108.4(19) C5 C4 H4 111(2) C3 C4 H4 111.2(18) O1 C5 C6 108.02(18) O1 C5 C4 109.17(18) C6 C5 C4 112.42(19) O1 C5 H5 107(2) C6 C5 H5 112(2) C4 C5 H5 108(2) C5 C6 C7 113.05(19) C5 C6 H6A 108.4(19) C7 C6 H6A 104.3(19) C5 C6 H6B 108.7(19) C7 C6 H6B 112(2) H6A C6 H6B 111(3) C6 C7 S1 112.44(16) C6 C7 S2 109.84(15) S1 C7 S2 105.94(11) C6 C7 H7 110.6(19) S1 C7 H7 112.0(18) S2 C7 H7 105.6(19) O2 C8 O3 104.41(16) O2 C8 C9 109.96(19) O3 C8 C9 108.70(19) O2 C8 C10 109.90(19) O3 C8 C10 110.61(18) C9 C8 C10 112.90(19) C8 C9 H9A 109.5 C8 C9 H9B 109.5 H9A C9 H9B 109.5 C8 C9 H9C 109.5 H9A C9 H9C 109.5 H9B C9 H9C 109.5 C8 C10 H10A 109.5 C8 C10 H10B 109.5 H10A C10 H10B 109.5 C8 C10 H10C 109.5 H10A C10 H10C 109.5 H10B C10 H10C 109.5 O4 C11 O5 105.29(17) O4 C11 C12 108.3(2) O5 C11 C12 108.7(2) O4 C11 C13 110.99(19) O5 C11 C13 109.3(2) C12 C11 C13 113.9(2) C11 C12 H12A 109.5 C11 C12 H12B 109.5 H12A C12 H12B 109.5 C11 C12 H12C 109.5 H12A C12 H12C 109.5 H12B C12 H12C 109.5 C11 C13 H13A 109.5 C11 C13 H13B 109.5 H13A C13 H13B 109.5 C11 C13 H13C 109.5 H13A C13 H13C 109.5 H13B C13 H13C 109.5 C22 C21 C26 120.2(2) C22 C21 S2 119.26(19) C26 C21 S2 120.6(2) C21 C22 C23 119.7(3) C21 C22 H22 120(2) C23 C22 H22 120(2) C24 C23 C22 120.4(3) C24 C23 H23 118(2) C22 C23 H23 122(2) C23 C24 C25 119.7(3) C23 C24 H24 122(2) C25 C24 H24 118(2) C24 C25 C26 120.4(3) C24 C25 H25 120(2) C26 C25 H25 119(2) C25 C26 C21 119.5(3) C25 C26 H26 120(2) C21 C26 H26 120(2) C36 C31 C32 119.3(2) C36 C31 S1 124.82(19) C32 C31 S1 115.8(2) C33 C32 C31 119.7(3) C33 C32 H32 123(2) C31 C32 H32 117(2) C32 C33 C34 121.0(3) C32 C33 H33 118(3) C34 C33 H33 120(3) C35 C34 C33 119.9(3) C35 C34 H34 122(3) C33 C34 H34 119(3) C34 C35 C36 119.7(3) C34 C35 H35 118(2) C36 C35 H35 122(2) C31 C36 C35 120.3(3) C31 C36 H36 120.8(19) C35 C36 H36 119(2) C1 O1 C5 113.20(16) C1 O2 C8 110.53(16) C2 O3 C8 106.79(16) C3 O4 C11 107.20(17) C4 O5 C11 109.75(16) C31 S1 C7 104.20(11) C21 S2 C7 100.79(10) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 O1 1.406(3) C1 O2 1.417(3) C1 C2 1.533(3) C1 H1 0.89(3) C2 O3 1.429(3) C2 C3 1.515(3) C2 H2 0.97(3) C3 O4 1.417(3) C3 C4 1.545(3) C3 H3 0.96(3) C4 O5 1.428(3) C4 C5 1.526(3) C4 H4 0.96(3) C5 O1 1.436(3) C5 C6 1.522(3) C5 H5 0.90(3) C6 C7 1.530(3) C6 H6A 0.98(3) C6 H6B 0.95(3) C7 S1 1.816(2) C7 S2 1.823(2) C7 H7 0.96(3) C8 O2 1.439(3) C8 O3 1.441(3) C8 C9 1.506(3) C8 C10 1.517(3) C9 H9A 0.9800 C9 H9B 0.9800 C9 H9C 0.9800 C10 H10A 0.9800 C10 H10B 0.9800 C10 H10C 0.9800 C11 O4 1.423(3) C11 O5 1.431(3) C11 C12 1.510(3) C11 C13 1.524(3) C12 H12A 0.9800 C12 H12B 0.9800 C12 H12C 0.9800 C13 H13A 0.9800 C13 H13B 0.9800 C13 H13C 0.9800 C21 C22 1.383(4) C21 C26 1.387(3) C21 S2 1.782(2) C22 C23 1.387(4) C22 H22 0.91(3) C23 C24 1.376(4) C23 H23 0.91(3) C24 C25 1.383(5) C24 H24 0.87(3) C25 C26 1.385(4) C25 H25 0.87(3) C26 H26 0.94(3) C31 C36 1.394(4) C31 C32 1.396(3) C31 S1 1.767(2) C32 C33 1.378(4) C32 H32 0.87(4) C33 C34 1.383(5) C33 H33 0.91(4) C34 C35 1.382(5) C34 H34 0.93(4) C35 C36 1.394(4) C35 H35 0.96(4) C36 H36 0.97(3)