#------------------------------------------------------------------------------
#$Date: 2016-02-20 03:06:23 +0000 (Sat, 20 Feb 2016) $
#$Revision: 176774 $
#$URL: svn://www.crystallography.net/cod/cif/2/20/49/2204983.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/. The original data for this entry
# were provided by IUCr Journals, http://journals.iucr.org/.
#
# The file may be used within the scientific community so long as
# proper attribution is given to the journal article from which the
# data were obtained.
#
data_2204983
loop_
_publ_author_name
'Calmuschi, Beatrice'
'Englert, Ulli'
_publ_section_title
rac-[2-(1-Aminoethyl)phenyl-\k^2^C^1^,N](hexafluoroacetylacetonato-\k^2^O,O')palladium(II)
_journal_issue 1
_journal_name_full 'Acta Crystallographica Section E'
_journal_page_first m168
_journal_page_last m170
_journal_paper_doi 10.1107/S1600536804032866
_journal_volume 61
_journal_year 2005
_chemical_formula_iupac '[Pd (C8 H11 N) (C5 F6 O2)]'
_chemical_formula_moiety 'C13 H11 F6 N O2 Pd'
_chemical_formula_sum 'C13 H11 F6 N O2 Pd'
_chemical_formula_weight 433.63
_chemical_name_systematic
;
rac-[2-(1-Aminoethyl)phenyl-\k^2^C^1^,N](hexafluoroacetylacetonato-
\k^2^O,O')palladium(II)
;
_space_group_IT_number 15
_symmetry_cell_setting monoclinic
_symmetry_space_group_name_Hall '-C 2yc'
_symmetry_space_group_name_H-M 'C 1 2/c 1'
_atom_sites_solution_hydrogens geom
_atom_sites_solution_primary direct
_atom_sites_solution_secondary difmap
_audit_creation_method SHELXL97
_cell_angle_alpha 90.00
_cell_angle_beta 112.5743(13)
_cell_angle_gamma 90.00
_cell_formula_units_Z 8
_cell_length_a 23.283(12)
_cell_length_b 8.824(6)
_cell_length_c 15.562(10)
_cell_measurement_reflns_used 25
_cell_measurement_temperature 293(2)
_cell_measurement_theta_max 27.00
_cell_measurement_theta_min 2.50
_cell_volume 2952(3)
_computing_cell_refinement 'CAD-4 Operations Manual'
_computing_data_collection
'CAD-4 Operations Manual (Enraf-Nonius, 1977)'
_computing_data_reduction 'PROCESS in MolEN (Fair, 1990)'
_computing_molecular_graphics 'PLATON (Spek, 2003)'
_computing_publication_material SHELXL97
_computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)'
_computing_structure_solution 'SHELXS97 (Sheldrick, 1997)'
_diffrn_ambient_temperature 223(2)
_diffrn_measured_fraction_theta_full 0.94
_diffrn_measured_fraction_theta_max 0.94
_diffrn_measurement_device_type 'Enraf-Nonius CAD-4'
_diffrn_measurement_method \q/2\q
_diffrn_radiation_monochromator graphite
_diffrn_radiation_source 'fine-focus sealed tube'
_diffrn_radiation_type MoK\a
_diffrn_radiation_wavelength 0.71073
_diffrn_reflns_av_R_equivalents 0.0635
_diffrn_reflns_av_sigmaI/netI 0.0841
_diffrn_reflns_limit_h_max 29
_diffrn_reflns_limit_h_min 0
_diffrn_reflns_limit_k_max 11
_diffrn_reflns_limit_k_min 0
_diffrn_reflns_limit_l_max 18
_diffrn_reflns_limit_l_min -19
_diffrn_reflns_number 3450
_diffrn_reflns_theta_full 27.00
_diffrn_reflns_theta_max 27.00
_diffrn_reflns_theta_min 2.50
_diffrn_standards_decay_% 0
_diffrn_standards_interval_time 120
_diffrn_standards_number 3
_exptl_absorpt_coefficient_mu 1.331
_exptl_absorpt_correction_T_max 0.8784
_exptl_absorpt_correction_T_min 0.4784
_exptl_absorpt_correction_type '\y scan'
_exptl_absorpt_process_details '(North et al., 1968)'
_exptl_crystal_colour yellow
_exptl_crystal_density_diffrn 1.951
_exptl_crystal_density_meas ?
_exptl_crystal_density_method .
_exptl_crystal_description rod
_exptl_crystal_F_000 1696
_exptl_crystal_size_max 0.65
_exptl_crystal_size_mid 0.12
_exptl_crystal_size_min 0.10
_refine_diff_density_max 1.179
_refine_diff_density_min -1.333
_refine_ls_extinction_method none
_refine_ls_goodness_of_fit_ref 0.991
_refine_ls_hydrogen_treatment constr
_refine_ls_matrix_type full
_refine_ls_number_parameters 209
_refine_ls_number_reflns 3220
_refine_ls_number_restraints 0
_refine_ls_restrained_S_all 0.991
_refine_ls_R_factor_all 0.1029
_refine_ls_R_factor_gt 0.0566
_refine_ls_shift/su_max 0.000
_refine_ls_shift/su_mean 0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'calc w = 1/[\s^2^(Fo^2^)+(0.075P)^2^] where P=(Fo^2^+2Fc^2^)/3'
_refine_ls_weighting_scheme calc
_refine_ls_wR_factor_gt 0.1224
_refine_ls_wR_factor_ref 0.1375
_reflns_number_gt 2123
_reflns_number_total 3220
_reflns_threshold_expression I>2\s(I)
_cod_data_source_file ww6316.cif
_cod_data_source_block I
_cod_depositor_comments
;
The following automatic conversions were performed:
'_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic'
according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic'
dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29.
Automatic conversion script
Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius
The following automatic conversions were performed:
'_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic'
according to /home/saulius/struct/CIF-dictionaries/cif_core.dic
dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29.
Automatic conversion script
Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana
;
_cod_original_sg_symbol_H-M C2/c
_cod_database_code 2204983
_cod_database_fobs_code 2204983
loop_
_symmetry_equiv_pos_as_xyz
'x, y, z'
'-x, y, -z+1/2'
'x+1/2, y+1/2, z'
'-x+1/2, y+1/2, -z+1/2'
'-x, -y, -z'
'x, -y, z-1/2'
'-x+1/2, -y+1/2, -z'
'x+1/2, -y+1/2, z-1/2'
loop_
_atom_site_label
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_calc_flag
_atom_site_refinement_flags
_atom_site_occupancy
_atom_site_type_symbol
Pd1 0.03237(2) 0.47106(6) 0.17376(3) 0.02853(17) Uani d . 1 Pd
O1 0.1181(2) 0.5506(6) 0.2713(3) 0.0388(12) Uani d . 1 O
O2 0.0579(2) 0.2536(5) 0.2123(3) 0.0355(11) Uani d . 1 O
N1 0.0039(3) 0.6793(7) 0.1197(4) 0.0398(14) Uani d . 1 N
H1A 0.0167 0.7517 0.1686 0.052 Uiso calc R 1 H
H1B 0.0236 0.7041 0.0782 0.052 Uiso calc R 1 H
C1 -0.0468(3) 0.4126(8) 0.0756(4) 0.0292(14) Uani d . 1 C
C2 -0.0649(3) 0.2673(8) 0.0458(5) 0.0341(16) Uani d . 1 C
H2 -0.0386 0.1819 0.0782 0.044 Uiso calc R 1 H
C3 -0.1200(3) 0.2398(9) -0.0298(5) 0.0409(17) Uani d . 1 C
H3 -0.1329 0.1355 -0.0497 0.053 Uiso calc R 1 H
C4 -0.1565(3) 0.3597(10) -0.0769(5) 0.0466(19) Uani d . 1 C
H4 -0.1944 0.3407 -0.1319 0.061 Uiso calc R 1 H
C5 -0.1400(3) 0.5059(9) -0.0468(5) 0.045(2) Uani d . 1 C
H5 -0.1671 0.5900 -0.0793 0.058 Uiso calc R 1 H
C6 -0.0851(3) 0.5359(9) 0.0292(5) 0.0345(14) Uani d . 1 C
C7 -0.0642(3) 0.6899(8) 0.0694(5) 0.0396(17) Uani d . 1 C
H7 -0.0824 0.7089 0.1156 0.051 Uiso calc R 1 H
C8 -0.0830(4) 0.8183(10) 0.0011(6) 0.059(2) Uani d . 1 C
H8A -0.0674 0.9139 0.0338 0.076 Uiso calc R 1 H
H8B -0.1285 0.8224 -0.0290 0.076 Uiso calc R 1 H
H8C -0.0654 0.8026 -0.0463 0.076 Uiso calc R 1 H
C9 0.2199(3) 0.5476(11) 0.3780(6) 0.057(2) Uani d . 1 C
C10 0.1606(3) 0.4641(10) 0.3194(5) 0.0389(16) Uani d . 1 C
C11 0.1601(3) 0.3080(9) 0.3224(5) 0.0452(19) Uani d . 1 C
H11 0.1978 0.2571 0.3646 0.059 Uiso calc R 1 H
C12 0.1104(4) 0.2181(8) 0.2702(5) 0.0378(17) Uani d . 1 C
C13 0.1190(4) 0.0483(9) 0.2815(5) 0.050(2) Uani d . 1 C
F1 0.2556(2) 0.4726(7) 0.4524(4) 0.0892(19) Uani d . 1 F
F2 0.2095(3) 0.6762(7) 0.4098(5) 0.102(2) Uani d . 1 F
F3 0.2542(3) 0.5695(13) 0.3296(5) 0.140(4) Uani d . 1 F
F4 0.1186(5) -0.0163(7) 0.2065(5) 0.125(3) Uani d . 1 F
F5 0.0715(4) -0.0190(7) 0.2928(6) 0.118(3) Uani d . 1 F
F6 0.1656(4) 0.0038(7) 0.3502(7) 0.160(5) Uani d . 1 F
loop_
_atom_site_aniso_label
_atom_site_aniso_U_11
_atom_site_aniso_U_22
_atom_site_aniso_U_33
_atom_site_aniso_U_12
_atom_site_aniso_U_13
_atom_site_aniso_U_23
Pd1 0.0293(3) 0.0316(3) 0.0253(2) -0.0017(3) 0.01120(18) -0.0009(2)
O1 0.034(3) 0.045(3) 0.035(3) -0.001(2) 0.011(2) -0.004(2)
O2 0.040(3) 0.029(3) 0.035(3) 0.005(2) 0.011(2) 0.002(2)
N1 0.043(3) 0.034(4) 0.040(3) -0.002(3) 0.012(3) 0.000(3)
C1 0.030(3) 0.036(4) 0.026(3) -0.003(3) 0.016(3) 0.001(3)
C2 0.038(4) 0.030(4) 0.038(4) -0.005(3) 0.019(3) 0.000(3)
C3 0.038(4) 0.045(5) 0.041(4) -0.016(3) 0.017(3) -0.008(3)
C4 0.033(4) 0.061(5) 0.041(4) -0.011(4) 0.009(3) -0.005(4)
C5 0.034(4) 0.050(6) 0.043(4) 0.005(3) 0.007(3) 0.006(3)
C6 0.031(3) 0.040(4) 0.034(3) -0.004(3) 0.013(3) 0.002(3)
C7 0.039(4) 0.036(4) 0.043(4) 0.002(3) 0.014(3) -0.006(3)
C8 0.066(6) 0.042(5) 0.061(6) 0.013(4) 0.017(5) 0.019(4)
C9 0.028(4) 0.076(7) 0.061(5) -0.003(4) 0.010(4) -0.015(5)
C10 0.026(3) 0.057(5) 0.033(3) 0.004(3) 0.009(3) -0.010(4)
C11 0.029(4) 0.053(5) 0.048(4) 0.014(3) 0.010(3) 0.001(4)
C12 0.052(4) 0.037(4) 0.030(4) 0.011(3) 0.022(3) 0.004(3)
C13 0.065(5) 0.041(5) 0.039(4) 0.007(4) 0.013(4) 0.001(3)
F1 0.050(3) 0.107(5) 0.076(4) -0.007(3) -0.015(3) -0.008(3)
F2 0.059(4) 0.076(4) 0.131(6) -0.009(3) -0.008(4) -0.043(4)
F3 0.070(4) 0.265(11) 0.093(5) -0.085(6) 0.041(4) -0.037(6)
F4 0.249(10) 0.057(4) 0.098(5) 0.042(5) 0.100(6) 0.002(3)
F5 0.154(7) 0.050(4) 0.190(9) 0.012(4) 0.111(7) 0.027(4)
F6 0.156(7) 0.059(5) 0.151(7) 0.033(4) -0.069(6) 0.007(4)
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
Pd Pd -.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
F F .0171 .0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O .0106 .0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N .0061 .0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
C C .0033 .0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H .0000 .0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
_geom_angle_publ_flag
C1 Pd1 N1 81.7(3) yes
C1 Pd1 O2 93.6(2) yes
N1 Pd1 O2 173.3(2) yes
C1 Pd1 O1 174.7(2) yes
N1 Pd1 O1 93.8(2) yes
O2 Pd1 O1 90.74(19) yes
C10 O1 Pd1 122.8(5) ?
C12 O2 Pd1 123.0(5) ?
C7 N1 Pd1 113.0(5) ?
C7 N1 H1A 109.0 ?
Pd1 N1 H1A 109.0 ?
C7 N1 H1B 109.0 ?
Pd1 N1 H1B 109.0 ?
H1A N1 H1B 107.8 ?
C2 C1 C6 119.6(6) ?
C2 C1 Pd1 125.7(5) ?
C6 C1 Pd1 114.5(5) ?
C1 C2 C3 120.8(7) ?
C1 C2 H2 119.6 ?
C3 C2 H2 119.6 ?
C4 C3 C2 119.8(7) ?
C4 C3 H3 120.1 ?
C2 C3 H3 120.1 ?
C5 C4 C3 120.3(7) ?
C5 C4 H4 119.9 ?
C3 C4 H4 119.9 ?
C4 C5 C6 120.8(7) ?
C4 C5 H5 119.6 ?
C6 C5 H5 119.6 ?
C5 C6 C1 118.7(7) ?
C5 C6 C7 124.8(7) ?
C1 C6 C7 116.4(6) ?
N1 C7 C6 105.9(6) ?
N1 C7 C8 112.7(7) ?
C6 C7 C8 115.5(7) ?
N1 C7 H7 107.5 ?
C6 C7 H7 107.5 ?
C8 C7 H7 107.5 ?
C7 C8 H8A 109.5 ?
C7 C8 H8B 109.5 ?
H8A C8 H8B 109.5 ?
C7 C8 H8C 109.5 ?
H8A C8 H8C 109.5 ?
H8B C8 H8C 109.5 ?
F2 C9 F3 109.6(9) ?
F2 C9 F1 104.6(8) ?
F3 C9 F1 105.3(7) ?
F2 C9 C10 113.1(7) ?
F3 C9 C10 109.9(7) ?
F1 C9 C10 113.9(8) ?
O1 C10 C11 128.1(7) ?
O1 C10 C9 113.1(8) ?
C11 C10 C9 118.7(7) ?
C10 C11 C12 124.7(7) ?
C10 C11 H11 117.6 ?
C12 C11 H11 117.6 ?
O2 C12 C11 130.4(7) ?
O2 C12 C13 112.5(7) ?
C11 C12 C13 117.2(7) ?
F6 C13 F4 109.5(9) ?
F6 C13 F5 103.8(9) ?
F4 C13 F5 101.9(8) ?
F6 C13 C12 116.1(7) ?
F4 C13 C12 112.1(7) ?
F5 C13 C12 112.3(7) ?
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
_geom_bond_publ_flag
Pd1 C1 1.959(6) yes
Pd1 N1 2.024(6) yes
Pd1 O2 2.030(5) yes
Pd1 O1 2.110(5) yes
O1 C10 1.246(9) yes
O2 C12 1.248(8) yes
N1 C7 1.478(9) ?
N1 H1A 0.9500 ?
N1 H1B 0.9500 ?
C1 C2 1.373(9) ?
C1 C6 1.415(10) ?
C2 C3 1.389(10) ?
C2 H2 0.9800 ?
C3 C4 1.378(11) ?
C3 H3 0.9800 ?
C4 C5 1.376(11) ?
C4 H4 0.9800 ?
C5 C6 1.394(9) ?
C5 H5 0.9800 ?
C6 C7 1.496(10) ?
C7 C8 1.500(10) ?
C7 H7 0.9800 ?
C8 H8A 0.9801 ?
C8 H8B 0.9801 ?
C8 H8C 0.9801 ?
C9 F2 1.297(10) ?
C9 F3 1.304(10) ?
C9 F1 1.315(11) ?
C9 C10 1.522(10) ?
C10 C11 1.379(11) ?
C11 C12 1.382(11) ?
C11 H11 0.9800 ?
C12 C13 1.512(11) ?
C13 F6 1.259(10) ?
C13 F4 1.296(10) ?
C13 F5 1.326(11) ?