#------------------------------------------------------------------------------ #$Date: 2013-12-28 13:58:47 +0000 (Sat, 28 Dec 2013) $ #$Revision: 91933 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/50/2205061.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2205061 loop_ _publ_author_name 'Zavodnik, Valery E.' 'Shutalev, Anatoly D.' 'Gurskaya, Galina V.' 'Stash, Adam I. ' 'Tsirelson, Vladimir G.' _publ_section_title ; 5-Acetyl-4,6-dimethyl-1,2,3,4-tetrahydropyrimidin-2-one ; _journal_issue 2 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o365 _journal_page_last o367 _journal_volume 61 _journal_year 2005 _chemical_formula_iupac 'C8 H12 N2 O2' _chemical_formula_moiety 'C8 H12 N2 O2' _chemical_formula_sum 'C8 H12 N2 O2' _chemical_formula_weight 168.20 _chemical_name_systematic ; 5-acetyl-4,6-dimethyl-1,2,3,4-tetrahydropyrimidin-2-one ; _space_group_IT_number 15 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-C 2yc' _symmetry_space_group_name_H-M 'C 1 2/c 1' _atom_sites_solution_hydrogens difmap _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 90.00 _cell_angle_beta 103.37(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 14.473(3) _cell_length_b 6.9940(10) _cell_length_c 17.200(3) _cell_measurement_reflns_used 24 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 12.4 _cell_measurement_theta_min 11.7 _cell_volume 1693.9(6) _computing_cell_refinement 'CAD-4-PC Software' _computing_data_collection 'CAD-4-PC Software (Enraf--Nonius, 1993)' _computing_data_reduction 'CAD-4-PC Software' _computing_molecular_graphics 'SHELXL97 (Sheldrick, 1997)' _computing_publication_material 'SHELXL97 and CIFTAB (Sheldrick, 1997)' _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Enraf--Nonius CAD-4' _diffrn_measurement_method \q-2\q _diffrn_radiation_monochromator beta-filter _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0193 _diffrn_reflns_av_sigmaI/netI 0.0353 _diffrn_reflns_limit_h_max 15 _diffrn_reflns_limit_h_min -17 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min 0 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -21 _diffrn_reflns_number 1712 _diffrn_reflns_theta_full 25.97 _diffrn_reflns_theta_max 25.97 _diffrn_reflns_theta_min 2.43 _diffrn_standards_decay_% 0.5 _diffrn_standards_interval_time 60 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.096 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.319 _exptl_crystal_density_meas 'not measured' _exptl_crystal_density_method 'not measured' _exptl_crystal_description prism _exptl_crystal_F_000 720 _exptl_crystal_size_max 0.46 _exptl_crystal_size_mid 0.42 _exptl_crystal_size_min 0.12 _refine_diff_density_max 0.190 _refine_diff_density_min -0.119 _refine_ls_extinction_coef 0.0043(12) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method 'SHELXL97 (Sheldrick, 1997)' _refine_ls_goodness_of_fit_ref 1.070 _refine_ls_hydrogen_treatment refall _refine_ls_matrix_type full _refine_ls_number_parameters 158 _refine_ls_number_reflns 1660 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.070 _refine_ls_R_factor_all 0.0520 _refine_ls_R_factor_gt 0.0294 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0592P)^2^+0.1584P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0919 _refine_ls_wR_factor_ref 0.0948 _reflns_number_gt 1187 _reflns_number_total 1660 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file gh6009.cif _[local]_cod_data_source_block I _[local]_cod_cif_authors_sg_H-M 'C 2/c' _cod_database_code 2205061 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y, -z+1/2' 'x+1/2, y+1/2, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y, z-1/2' '-x+1/2, -y+1/2, -z' 'x+1/2, -y+1/2, z-1/2' loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_occupancy _atom_site_type_symbol O1 0.31811(7) 0.72513(15) 0.42729(5) 0.0529(3) Uani d 1 O O2 0.11886(8) -0.00279(14) 0.27906(6) 0.0581(3) Uani d 1 O N1 0.19369(8) 0.53897(15) 0.44034(6) 0.0407(3) Uani d 1 N N3 0.27067(7) 0.48107(15) 0.34084(6) 0.0387(3) Uani d 1 N C2 0.26391(9) 0.59101(17) 0.40215(7) 0.0375(3) Uani d 1 C C4 0.19446(8) 0.35429(17) 0.30044(7) 0.0376(3) Uani d 1 C C5 0.14675(8) 0.26497(17) 0.36127(7) 0.0356(3) Uani d 1 C C5' 0.10586(9) 0.07488(18) 0.33966(7) 0.0396(3) Uani d 1 C C5'' 0.04751(11) -0.0303(2) 0.38736(9) 0.0506(4) Uani d 1 C C6 0.14486(8) 0.36756(17) 0.42763(7) 0.0358(3) Uani d 1 C C4' 0.12405(11) 0.4592(2) 0.23516(8) 0.0519(4) Uani d 1 C C6' 0.09575(11) 0.3223(2) 0.49339(8) 0.0473(3) Uani d 1 C H1 0.1901(11) 0.607(2) 0.4810(9) 0.049(4) Uiso d 1 H H3 0.3106(11) 0.510(2) 0.3153(9) 0.042(4) Uiso d 1 H H4 0.2235(9) 0.255(2) 0.2758(8) 0.039(3) Uiso d 1 H H41' 0.1562(13) 0.509(2) 0.1965(11) 0.069(5) Uiso d 1 H H42' 0.0723(13) 0.378(3) 0.2094(10) 0.067(5) Uiso d 1 H H43' 0.0966(12) 0.569(2) 0.2588(10) 0.057(4) Uiso d 1 H H51'' 0.0255(13) -0.147(3) 0.3555(11) 0.075(5) Uiso d 1 H H52'' 0.0840(14) -0.061(3) 0.4421(12) 0.080(6) Uiso d 1 H H53'' -0.0068(13) 0.047(3) 0.3957(10) 0.071(5) Uiso d 1 H H61' 0.1204(16) 0.213(3) 0.5214(13) 0.095(7) Uiso d 1 H H62' 0.0987(13) 0.435(3) 0.5288(11) 0.076(5) Uiso d 1 H H63' 0.0284(16) 0.309(3) 0.4739(12) 0.089(6) Uiso d 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O1 0.0623(6) 0.0563(6) 0.0438(5) -0.0194(5) 0.0197(4) -0.0117(4) O2 0.0692(7) 0.0551(6) 0.0602(7) -0.0178(5) 0.0360(5) -0.0197(5) N1 0.0500(6) 0.0413(5) 0.0353(5) -0.0029(5) 0.0189(4) -0.0063(4) N3 0.0398(5) 0.0449(6) 0.0351(5) -0.0054(4) 0.0164(4) -0.0017(4) C2 0.0418(6) 0.0402(6) 0.0307(5) -0.0008(5) 0.0088(5) 0.0007(5) C4 0.0432(6) 0.0392(6) 0.0343(6) -0.0034(5) 0.0171(5) -0.0060(5) C5 0.0364(6) 0.0392(6) 0.0339(6) 0.0022(5) 0.0140(4) 0.0015(5) C5' 0.0383(6) 0.0425(6) 0.0404(6) 0.0006(5) 0.0144(5) -0.0017(5) C5'' 0.0597(9) 0.0486(8) 0.0472(8) -0.0113(7) 0.0198(7) 0.0013(6) C6 0.0366(6) 0.0383(6) 0.0346(6) 0.0047(5) 0.0124(4) 0.0027(5) C4' 0.0551(8) 0.0644(9) 0.0351(6) -0.0096(7) 0.0081(6) 0.0031(6) C6' 0.0558(8) 0.0506(8) 0.0429(7) 0.0000(7) 0.0265(6) -0.0004(6) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O1 C2 1.2350(15) O2 C5' 1.2279(15) N1 C2 1.3803(16) N1 C6 1.3831(16) N1 H1 0.858(16) N3 C2 1.3270(15) N3 C4 1.4598(16) N3 H3 0.828(17) C4 C5 1.5152(15) C4 C4' 1.5192(19) C4 H4 0.959(14) C5 C6 1.3538(16) C5 C5' 1.4677(17) C5' C5'' 1.4993(18) C5'' H51'' 0.991(19) C5'' H52'' 0.99(2) C5'' H53'' 0.991(19) C6 C6' 1.5021(16) C4' H41' 0.960(19) C4' H42' 0.963(19) C4' H43' 0.997(18) C6' H61' 0.93(2) C6' H62' 0.99(2) C6' H63' 0.96(2) loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 N1 C6 123.98(10) C2 N1 H1 115.5(10) C6 N1 H1 119.1(10) C2 N3 C4 122.94(10) C2 N3 H3 117.9(10) C4 N3 H3 116.1(10) O1 C2 N3 124.11(11) O1 C2 N1 120.77(11) N3 C2 N1 115.03(11) N3 C4 C5 109.67(9) N3 C4 C4' 111.24(11) C5 C4 C4' 111.99(11) N3 C4 H4 106.8(8) C5 C4 H4 108.9(8) C4' C4 H4 108.0(8) C6 C5 C5' 127.45(10) C6 C5 C4 117.71(10) C5' C5 C4 114.83(10) O2 C5' C5 118.93(11) O2 C5' C5'' 117.63(12) C5 C5' C5'' 123.43(11) C5' C5'' H51'' 104.5(11) C5' C5'' H52'' 112.4(11) H51'' C5'' H52'' 112.5(15) C5' C5'' H53'' 112.2(11) H51'' C5'' H53'' 111.3(15) H52'' C5'' H53'' 104.2(15) C5 C6 N1 118.90(10) C5 C6 C6' 128.93(12) N1 C6 C6' 112.16(10) C4 C4' H41' 109.6(10) C4 C4' H42' 111.8(10) H41' C4' H42' 110.2(14) C4 C4' H43' 109.5(9) H41' C4' H43' 107.9(14) H42' C4' H43' 107.7(15) C6 C6' H61' 111.8(15) C6 C6' H62' 109.5(11) H61' C6' H62' 112.3(16) C6 C6' H63' 112.1(13) H61' C6' H63' 109.8(18) H62' C6' H63' 100.8(16) loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA N1 H1 O1 7_566 0.858(16) 1.991(17) 2.8487(15) 177.7(14) N3 H3 O2 4 0.828(17) 2.110(17) 2.8891(16) 156.8(13) _cod_database_fobs_code 2205061 _journal_paper_doi 10.1107/S1600536805000383