#------------------------------------------------------------------------------ #$Date: 2010-01-30 13:59:17 +0000 (Sat, 30 Jan 2010) $ #$Revision: 966 $ #$URL: svn://www.crystallography.net/cod/cif/2/2205098.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2205098 loop_ _publ_author_name 'Naotake Nakamura' 'Hirotaka Shimizu' 'Yoshihiro Ogawa' _publ_section_title ; Henicosane-1,21-dithiol ; _journal_issue 2 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first o450 _journal_page_last o452 _journal_volume 61 _journal_year 2005 _chemical_formula_iupac 'C21 H44 S2' _chemical_formula_moiety 'C21 H44 S2' _chemical_formula_sum 'C21 H44 S2' _chemical_formula_weight 360.70 _chemical_name_systematic ; Henicosane-1,21-dithiol ; _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _cell_angle_alpha 87.619(13) _cell_angle_beta 87.920(9) _cell_angle_gamma 77.733(11) _cell_formula_units_Z 2 _cell_length_a 4.7477(5) _cell_length_b 5.5680(11) _cell_length_c 44.455(5) _cell_measurement_reflns_used 25 _cell_measurement_temperature 296.0(10) _cell_measurement_theta_max 18.8 _cell_measurement_theta_min 10.0 _cell_volume 1146.9(3) _computing_cell_refinement 'MSC/AFC Diffractometer Control Software' _computing_data_collection ; MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1992) ; _computing_data_reduction 'CrystalStructure (Molecular Structure Corporation & Rigaku, 2001)' _computing_molecular_graphics 'ORTEP-3 for Windows (Farrugia, 1997)' _computing_publication_material CrystalStructure _computing_structure_refinement 'CRYSTALS (Watkin et al., 1996)' _computing_structure_solution 'SIR92 (Altomare et al., 1994)' _diffrn_measured_fraction_theta_full 0.9616 _diffrn_measured_fraction_theta_max 0.9616 _diffrn_measurement_device_type 'Rigaku AFC-5R' _diffrn_measurement_method \w _diffrn_radiation_type 'Cu K\a' _diffrn_radiation_wavelength 1.5418 _diffrn_reflns_av_R_equivalents 0.019 _diffrn_reflns_limit_h_max 5 _diffrn_reflns_limit_h_min -5 _diffrn_reflns_limit_k_max 6 _diffrn_reflns_limit_k_min -1 _diffrn_reflns_limit_l_max 54 _diffrn_reflns_limit_l_min -54 _diffrn_reflns_number 5611 _diffrn_reflns_theta_full 70.13 _diffrn_reflns_theta_max 70.13 _diffrn_standards_decay_% 12.43 _diffrn_standards_interval_count 150 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 2.067 _exptl_absorpt_correction_T_max 0.9772 _exptl_absorpt_correction_T_min 0.6398 _exptl_absorpt_correction_type '\y scan' _exptl_absorpt_process_details '(North et al., 1968)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.044 _exptl_crystal_density_meas 'not measured' _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 404.00 _exptl_crystal_size_max 0.65 _exptl_crystal_size_mid 0.22 _exptl_crystal_size_min 0.01 _refine_diff_density_max 0.60 _refine_diff_density_min -0.48 _refine_ls_extinction_coef 23.40(10) _refine_ls_extinction_method 'Larson (1970)' _refine_ls_goodness_of_fit_ref 1.001 _refine_ls_hydrogen_treatment constr _refine_ls_number_parameters 257 _refine_ls_number_reflns 4187 _refine_ls_R_factor_gt 0.0560 _refine_ls_shift/su_max 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w = (4Fo^2^)/[0.0001Fo^2^ + 3.3\s^2^(Fo) + 0.55]' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_ref 0.1230 _reflns_number_gt 1926 _reflns_number_total 4187 _reflns_threshold_expression F^2^>2\s(F^2^) _[local]_cod_data_source_file is6041.cif loop_ _symmetry_equiv_pos_site_id _symmetry_equiv_pos_as_xyz 1 x,y,z 2 -x,-y,-z loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.018 0.009 ; International Tables for Crystallography (1992, Vol. C, Tables 4.2.6.8 and 6.1.1.4) ; H H 0.000 0.000 ; International Tables for Crystallography (1992, Vol. C, Table 6.1.1.4) ; S S 0.333 0.557 ; International Tables for Crystallography (1992, Vol. C, Tables 4.2.6.8 and 6.1.1.4) ; loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol S1 1.3600(3) -0.7742(2) 0.52661(3) 0.0952(5) Uani d . 1.00 S S2 0.3417(3) 2.8117(2) 0.97663(3) 0.0993(5) Uani d . 1.00 S C1 1.1122(8) -0.5364(6) 0.54564(7) 0.0751(13) Uani d . 1.00 C C2 1.2436(7) -0.4111(6) 0.56909(7) 0.0570(11) Uani d . 1.00 C C3 1.0232(7) -0.2212(6) 0.58586(7) 0.0565(11) Uani d . 1.00 C C4 1.1522(7) -0.0899(6) 0.60936(7) 0.0528(11) Uani d . 1.00 C C5 0.9320(7) 0.0949(5) 0.62651(7) 0.0527(11) Uani d . 1.00 C C6 1.0587(7) 0.2278(5) 0.64994(7) 0.0511(11) Uani d . 1.00 C C7 0.8380(7) 0.4129(5) 0.66726(6) 0.0500(11) Uani d . 1.00 C C8 0.9642(7) 0.5470(5) 0.69058(7) 0.0498(11) Uani d . 1.00 C C9 0.7431(7) 0.7302(5) 0.70789(7) 0.0505(11) Uani d . 1.00 C C10 0.8693(6) 0.8660(5) 0.73108(6) 0.0496(11) Uani d . 1.00 C C11 0.6480(7) 1.0485(5) 0.74846(7) 0.0502(10) Uani d . 1.00 C C12 0.7735(7) 1.1849(5) 0.77161(6) 0.0504(11) Uani d . 1.00 C C13 0.5528(7) 1.3678(5) 0.78911(6) 0.0507(11) Uani d . 1.00 C C14 0.6801(7) 1.5034(5) 0.81227(7) 0.0503(11) Uani d . 1.00 C C15 0.4586(7) 1.6854(5) 0.82977(6) 0.0512(11) Uani d . 1.00 C C16 0.5859(7) 1.8220(6) 0.85282(7) 0.0514(11) Uani d . 1.00 C C17 0.3640(7) 2.0029(6) 0.87054(7) 0.0534(11) Uani d . 1.00 C C18 0.4937(7) 2.1386(6) 0.89347(7) 0.0555(11) Uani d . 1.00 C C19 0.2728(7) 2.3168(6) 0.91171(7) 0.0587(12) Uani d . 1.00 C C20 0.4060(7) 2.4573(6) 0.93380(7) 0.0594(12) Uani d . 1.00 C C21 0.1831(8) 2.6256(7) 0.95274(8) 0.0789(14) Uani d . 1.00 C H1 1.0304 -0.4153 0.53095 0.089 Uiso c R 1.00 H H2 0.9645 -0.6064 0.55511 0.089 Uiso c R 1.00 H H3 1.3832 -0.3318 0.55954 0.068 Uiso c R 1.00 H H4 1.3351 -0.5326 0.58325 0.068 Uiso c R 1.00 H H5 0.8855 -0.3015 0.59561 0.067 Uiso c R 1.00 H H6 0.9297 -0.1016 0.57159 0.067 Uiso c R 1.00 H H7 1.2865 -0.0063 0.59956 0.063 Uiso c R 1.00 H H8 1.2496 -0.2098 0.62337 0.063 Uiso c R 1.00 H H9 0.7982 0.0109 0.63636 0.063 Uiso c R 1.00 H H10 0.8340 0.2141 0.61246 0.063 Uiso c R 1.00 H H11 1.1572 0.1085 0.66395 0.061 Uiso c R 1.00 H H12 1.1921 0.3121 0.64007 0.061 Uiso c R 1.00 H H13 0.7388 0.5316 0.65324 0.060 Uiso c R 1.00 H H14 0.7054 0.3284 0.67722 0.060 Uiso c R 1.00 H H15 1.0951 0.6335 0.68067 0.060 Uiso c R 1.00 H H16 1.0652 0.4282 0.70449 0.060 Uiso c R 1.00 H H17 0.6139 0.6434 0.71808 0.061 Uiso c R 1.00 H H18 0.6400 0.8476 0.69396 0.061 Uiso c R 1.00 H H19 0.9996 0.9523 0.72098 0.060 Uiso c R 1.00 H H20 0.9711 0.7482 0.74504 0.060 Uiso c R 1.00 H H21 0.5460 1.1661 0.73449 0.060 Uiso c R 1.00 H H22 0.5178 0.9621 0.75856 0.060 Uiso c R 1.00 H H23 0.8755 1.0671 0.78556 0.061 Uiso c R 1.00 H H24 0.9036 1.2712 0.76149 0.061 Uiso c R 1.00 H H25 0.4225 1.2818 0.79923 0.061 Uiso c R 1.00 H H26 0.4508 1.4860 0.77519 0.061 Uiso c R 1.00 H H27 0.8099 1.5900 0.80215 0.061 Uiso c R 1.00 H H28 0.7826 1.3854 0.82617 0.061 Uiso c R 1.00 H H29 0.3555 1.8029 0.81585 0.062 Uiso c R 1.00 H H30 0.3294 1.5986 0.83996 0.062 Uiso c R 1.00 H H31 0.6903 1.7044 0.86664 0.062 Uiso c R 1.00 H H32 0.7139 1.9098 0.84260 0.062 Uiso c R 1.00 H H33 0.2594 2.1207 0.85676 0.064 Uiso c R 1.00 H H34 0.2360 1.9154 0.88082 0.064 Uiso c R 1.00 H H35 0.6191 2.2282 0.88312 0.067 Uiso c R 1.00 H H36 0.6012 2.0204 0.90701 0.067 Uiso c R 1.00 H H37 0.1609 2.4322 0.89818 0.071 Uiso c R 1.00 H H38 0.1511 2.2268 0.92261 0.071 Uiso c R 1.00 H H39 0.5247 2.3422 0.94681 0.072 Uiso c R 1.00 H H40 0.5206 2.5536 0.92287 0.072 Uiso c R 1.00 H H41 0.0802 2.5280 0.96508 0.095 Uiso c R 1.00 H H42 0.0534 2.7309 0.93972 0.095 Uiso c R 1.00 H H1s 1.481(8) -0.702(7) 0.5148(8) 0.1113 Uiso d T 1.00 H H2s 0.330(8) 2.683(6) 0.9951(8) 0.1152 Uiso d T 1.00 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 0.1200(12) 0.0823(9) 0.0780(8) -0.0045(7) 0.0135(7) -0.0411(7) S2 0.1346(12) 0.0883(9) 0.0796(8) -0.0259(8) -0.0023(8) -0.0450(7) C1 0.081(3) 0.075(3) 0.067(2) -0.005(2) -0.005(2) -0.034(2) C2 0.064(3) 0.052(2) 0.053(2) -0.0070(18) -0.0002(18) -0.0179(18) C3 0.056(2) 0.054(2) 0.057(2) -0.0087(18) -0.0025(18) -0.0229(18) C4 0.054(2) 0.051(2) 0.054(2) -0.0070(18) -0.0017(18) -0.0204(18) C5 0.052(2) 0.054(2) 0.052(2) -0.0065(18) -0.0017(17) -0.0189(18) C6 0.053(2) 0.048(2) 0.052(2) -0.0064(17) -0.0024(17) -0.0191(17) C7 0.051(2) 0.048(2) 0.051(2) -0.0071(17) -0.0011(17) -0.0190(17) C8 0.052(2) 0.048(2) 0.050(2) -0.0073(17) -0.0004(17) -0.0197(17) C9 0.050(2) 0.051(2) 0.0496(19) -0.0063(17) -0.0005(17) -0.0174(17) C10 0.051(2) 0.049(2) 0.049(2) -0.0081(18) 0.0002(17) -0.0202(18) C11 0.053(2) 0.049(2) 0.0482(18) -0.0080(18) -0.0014(16) -0.0182(17) C12 0.052(2) 0.050(2) 0.049(2) -0.0074(18) -0.0005(18) -0.0193(18) C13 0.052(2) 0.051(2) 0.049(2) -0.0064(17) -0.0017(17) -0.0191(17) C14 0.051(2) 0.050(2) 0.050(2) -0.0088(17) -0.0025(17) -0.0209(17) C15 0.053(2) 0.051(2) 0.0498(19) -0.0090(17) -0.0013(17) -0.0192(17) C16 0.053(2) 0.052(2) 0.049(2) -0.0076(18) -0.0016(17) -0.0192(17) C17 0.054(2) 0.056(2) 0.050(2) -0.0082(18) -0.0026(17) -0.0174(18) C18 0.057(3) 0.058(2) 0.052(2) -0.0083(18) -0.0028(18) -0.0227(18) C19 0.059(2) 0.061(2) 0.057(2) -0.0085(19) -0.0027(18) -0.0264(19) C20 0.063(3) 0.062(2) 0.055(2) -0.0131(19) 0.0013(19) -0.0248(19) C21 0.078(3) 0.087(3) 0.073(3) -0.013(2) 0.007(2) -0.042(2) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag S1 C1 1.792(3) no S2 C21 1.803(3) no C1 C2 1.502(4) no C2 C3 1.519(3) no C3 C4 1.517(3) no C4 C5 1.511(3) no C5 C6 1.514(3) no C6 C7 1.517(3) no C7 C8 1.513(3) no C8 C9 1.512(3) no C9 C10 1.515(3) no C10 C11 1.512(3) no C11 C12 1.515(3) no C12 C13 1.514(3) no C13 C14 1.516(3) no C14 C15 1.514(3) no C15 C16 1.516(3) no C16 C17 1.517(3) no C17 C18 1.515(3) no C18 C19 1.518(3) no C19 C20 1.515(4) no C20 C21 1.512(4) no S1 H1s 0.91(4) no S2 H2s 1.08(4) no C1 H1 0.95 no C1 H2 0.95 no C2 H3 0.95 no C2 H4 0.95 no C3 H5 0.95 no C3 H6 0.95 no C4 H7 0.95 no C4 H8 0.95 no C5 H9 0.95 no C5 H10 0.95 no C6 H11 0.95 no C6 H12 0.95 no C7 H13 0.95 no C7 H14 0.95 no C8 H15 0.95 no C8 H16 0.95 no C9 H17 0.95 no C9 H18 0.95 no C10 H19 0.95 no C10 H20 0.95 no C11 H21 0.95 no C11 H22 0.95 no C12 H23 0.95 no C12 H24 0.95 no C13 H25 0.95 no C13 H26 0.95 no C14 H27 0.95 no C14 H28 0.95 no C15 H29 0.95 no C15 H30 0.95 no C16 H31 0.95 no C16 H32 0.95 no C17 H33 0.95 no C17 H34 0.95 no C18 H35 0.95 no C18 H36 0.95 no C19 H37 0.95 no C19 H38 0.95 no C20 H39 0.95 no C20 H40 0.95 no C21 H41 0.95 no C21 H42 0.95 no loop_ _geom_contact_atom_site_label_1 _geom_contact_atom_site_label_2 _geom_contact_distance _geom_contact_site_symmetry_1 _geom_contact_site_symmetry_2 _geom_contact_publ_flag S1 S1 3.5401(18) . 2_836 no S2 S2 3.5919(19) 1_535 2_697 no loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_2 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag S1 C1 C2 . . . 114.8(2) no C1 C2 C3 . . . 113.0(3) no C2 C3 C4 . . . 113.8(3) no C3 C4 C5 . . . 113.8(3) no C4 C5 C6 . . . 114.2(3) no C5 C6 C7 . . . 114.3(2) no C6 C7 C8 . . . 114.5(2) no C7 C8 C9 . . . 114.2(3) no C8 C9 C10 . . . 114.3(2) no C9 C10 C11 . . . 114.2(2) no C10 C11 C12 . . . 114.4(3) no C11 C12 C13 . . . 114.6(2) no C12 C13 C14 . . . 114.3(2) no C13 C14 C15 . . . 114.1(2) no C14 C15 C16 . . . 114.1(2) no C15 C16 C17 . . . 114.2(3) no C16 C17 C18 . . . 113.7(3) no C17 C18 C19 . . . 114.1(3) no C18 C19 C20 . . . 113.5(3) no C19 C20 C21 . . . 112.8(3) no S2 C21 C20 . . . 112.5(2) no C1 S1 H1s . . . 108(2) no C21 S2 H2s . . . 89.6(19) no S1 C1 H1 . . . 107.9 no C2 C1 H1 . . . 108.0 no S1 C1 H2 . . . 108.3 no C2 C1 H2 . . . 108.3 no H1 C1 H2 . . . 109.5 no C1 C2 H3 . . . 108.7 no C3 C2 H3 . . . 108.7 no C1 C2 H4 . . . 108.4 no C3 C2 H4 . . . 108.5 no H3 C2 H4 . . . 109.5 no C2 C3 H5 . . . 108.5 no C4 C3 H5 . . . 108.4 no C2 C3 H6 . . . 108.3 no C4 C3 H6 . . . 108.3 no H5 C3 H6 . . . 109.5 no C3 C4 H7 . . . 108.5 no C5 C4 H7 . . . 108.4 no C3 C4 H8 . . . 108.3 no C5 C4 H8 . . . 108.3 no H7 C4 H8 . . . 109.5 no C4 C5 H9 . . . 108.3 no C6 C5 H9 . . . 108.3 no C4 C5 H10 . . . 108.2 no C6 C5 H10 . . . 108.2 no H9 C5 H10 . . . 109.5 no C5 C6 H11 . . . 108.2 no C7 C6 H11 . . . 108.2 no C5 C6 H12 . . . 108.3 no C7 C6 H12 . . . 108.3 no H11 C6 H12 . . . 109.5 no C6 C7 H13 . . . 108.2 no C8 C7 H13 . . . 108.1 no C6 C7 H14 . . . 108.3 no C8 C7 H14 . . . 108.2 no H13 C7 H14 . . . 109.5 no C7 C8 H15 . . . 108.5 no C9 C8 H15 . . . 107.9 no C7 C8 H16 . . . 108.2 no C9 C8 H16 . . . 108.5 no H15 C8 H16 . . . 109.5 no C8 C9 H17 . . . 108.0 no C10 C9 H17 . . . 108.0 no C8 C9 H18 . . . 108.5 no C10 C9 H18 . . . 108.5 no H17 C9 H18 . . . 109.4 no C9 C10 H19 . . . 108.3 no C11 C10 H19 . . . 108.3 no C9 C10 H20 . . . 108.2 no C11 C10 H20 . . . 108.2 no H19 C10 H20 . . . 109.5 no C10 C11 H21 . . . 108.2 no C12 C11 H21 . . . 108.1 no C10 C11 H22 . . . 108.3 no C12 C11 H22 . . . 108.3 no H21 C11 H22 . . . 109.5 no C11 C12 H23 . . . 108.1 no C13 C12 H23 . . . 108.1 no C11 C12 H24 . . . 108.2 no C13 C12 H24 . . . 108.2 no H23 C12 H24 . . . 109.5 no C12 C13 H25 . . . 108.3 no C14 C13 H25 . . . 108.3 no C12 C13 H26 . . . 108.2 no C14 C13 H26 . . . 108.2 no H25 C13 H26 . . . 109.5 no C13 C14 H27 . . . 108.4 no C15 C14 H27 . . . 108.4 no C13 C14 H28 . . . 108.2 no C15 C14 H28 . . . 108.2 no H27 C14 H28 . . . 109.5 no C14 C15 H29 . . . 108.2 no C16 C15 H29 . . . 108.3 no C14 C15 H30 . . . 108.3 no C16 C15 H30 . . . 108.4 no H29 C15 H30 . . . 109.5 no C15 C16 H31 . . . 108.2 no C17 C16 H31 . . . 108.2 no C15 C16 H32 . . . 108.4 no C17 C16 H32 . . . 108.3 no H31 C16 H32 . . . 109.5 no C16 C17 H33 . . . 108.3 no C18 C17 H33 . . . 108.3 no C16 C17 H34 . . . 108.5 no C18 C17 H34 . . . 108.5 no H33 C17 H34 . . . 109.5 no C17 C18 H35 . . . 108.4 no C19 C18 H35 . . . 108.4 no C17 C18 H36 . . . 108.2 no C19 C18 H36 . . . 108.2 no H35 C18 H36 . . . 109.5 no C18 C19 H37 . . . 108.4 no C20 C19 H37 . . . 108.3 no C18 C19 H38 . . . 108.5 no C20 C19 H38 . . . 108.6 no H37 C19 H38 . . . 109.4 no C19 C20 H39 . . . 108.5 no C21 C20 H39 . . . 108.6 no C19 C20 H40 . . . 108.8 no C21 C20 H40 . . . 108.7 no H39 C20 H40 . . . 109.5 no S2 C21 H41 . . . 108.6 no C20 C21 H41 . . . 108.7 no S2 C21 H42 . . . 108.8 no C20 C21 H42 . . . 108.7 no H41 C21 H42 . . . 109.5 no C1 S1 S1 . . 2_836 160.19(13) no C21 S2 S2 1_535 1_535 2_697 179.21(14) no loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag S1 C1 C2 C3 -176.7(2) no C1 C2 C3 C4 -179.2(3) no C2 C3 C4 C5 -178.7(3) no C3 C4 C5 C6 -179.7(3) no C4 C5 C6 C7 -179.8(3) no C5 C6 C7 C8 -179.7(3) no C6 C7 C8 C9 -179.7(3) no C7 C8 C9 C10 -179.5(2) no C8 C9 C10 C11 -179.8(3) no C9 C10 C11 C12 -179.9(3) no C10 C11 C12 C13 -180.0(2) no C11 C12 C13 C14 179.9(3) no C12 C13 C14 C15 -179.8(2) no C13 C14 C15 C16 -179.7(2) no C14 C15 C16 C17 -179.5(3) no C15 C16 C17 C18 -179.9(3) no C16 C17 C18 C19 -179.0(3) no C17 C18 C19 C20 -178.1(3) no C18 C19 C20 C21 -177.5(3) no C19 C20 C21 S2 -174.9(2) no C2 C1 S1 H1s -69(2) no C20 C21 S2 H2s -98(2) no _cod_database_code 2205098