#------------------------------------------------------------------------------ #$Date: 2013-08-29 16:37:19 +0100 (Thu, 29 Aug 2013) $ #$Revision: 88064 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/51/2205131.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2205131 loop_ _publ_author_name 'Punzo, Francesco' 'Watkin, David J.' 'Iezzi Simone, Michela ' 'Fleet, George W. J.' _publ_section_title (3R,4R,5S)-5-(Acetamidomethyl)-N-benzyl-3,4-dihydroxytetrahydrofuran-3-carboxamide _journal_issue 2 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o513 _journal_page_last o515 _journal_volume 61 _journal_year 2005 _chemical_formula_iupac 'C15 H20 N2 O5' _chemical_formula_moiety 'C15 H20 N2 O5' _chemical_formula_sum 'C15 H20 N2 O5' _chemical_formula_weight 308.33 _chemical_name_systematic ; (3R,4R,5S)-5-(Acetamidomethyl)-N-benzyl-3,4-dihydroxytetrahydrofuran- 3-carboxamide ; _space_group_IT_number 19 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 15.3802(6) _cell_length_b 5.4473(2) _cell_length_c 18.0635(8) _cell_measurement_reflns_used 3224 _cell_measurement_temperature 120 _cell_measurement_theta_max 27 _cell_measurement_theta_min 5 _cell_volume 1513.37(11) _computing_cell_refinement 'DENZO/SCALEPACK (Otwinowski & Minor, 1997)' _computing_data_collection 'COLLECT (Nonius, 2001)' _computing_data_reduction DENZO/SCALEPACK _computing_molecular_graphics 'CAMERON (Watkin et al., 1996)' _computing_publication_material CRYSTALS _computing_structure_refinement 'CRYSTALS (Betteridge et al., 2003)' _computing_structure_solution 'SIR92 (Altomare et al., 1994)' _diffrn_ambient_temperature 120 _diffrn_measured_fraction_theta_full 0.989 _diffrn_measured_fraction_theta_max 0.987 _diffrn_measurement_device_type 'Nonius KappaCCD' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_type 'Mo K\a' _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.048 _diffrn_reflns_limit_h_max 19 _diffrn_reflns_limit_h_min -19 _diffrn_reflns_limit_k_max 5 _diffrn_reflns_limit_k_min -7 _diffrn_reflns_limit_l_max 23 _diffrn_reflns_limit_l_min -23 _diffrn_reflns_number 5747 _diffrn_reflns_theta_full 26.542 _diffrn_reflns_theta_max 27.363 _diffrn_reflns_theta_min 5.115 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.102 _exptl_absorpt_correction_T_max 0.998 _exptl_absorpt_correction_T_min 0.820 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(DENZO/SCALEPACK; Otwinowski & Minor, 1997)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.353 _exptl_crystal_density_method 'not measured' _exptl_crystal_description needle _exptl_crystal_F_000 656 _exptl_crystal_size_max 0.40 _exptl_crystal_size_mid 0.04 _exptl_crystal_size_min 0.02 _refine_diff_density_max 0.27 _refine_diff_density_min -0.23 _refine_ls_abs_structure_details 'see text' _refine_ls_extinction_coef 16(5) _refine_ls_extinction_method 'Larson (1970)' _refine_ls_goodness_of_fit_ref 0.9344 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 200 _refine_ls_number_reflns 1973 _refine_ls_number_restraints 0 _refine_ls_R_factor_all 0.0465 _refine_ls_R_factor_gt 0.0340 _refine_ls_shift/su_max 0.000530 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details ; w=1/[\s^2^(F^2^) + 0.02 + 0.04P], where P = (max(Fo^2^, 0) + 2Fc^2^)/3 ; _refine_ls_weighting_scheme calc _refine_ls_wR_factor_all 0.0769 _refine_ls_wR_factor_gt 0.0735 _refine_ls_wR_factor_ref 0.0769 _reflns_number_gt 1594 _reflns_number_total 1973 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file ob6459.cif _[local]_cod_data_source_block 4 _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_cell_volume 1513.37(10) _cod_database_code 2205131 loop_ _symmetry_equiv_pos_as_xyz x,y,z x+1/2,-y+1/2,-z -x,y+1/2,-z+1/2 -x+1/2,-y,z+1/2 loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_type_symbol C1 0.88317(12) 0.7829(4) 0.87417(9) 0.0223 Uani 1.0000 C C2 0.97505(11) 0.8760(3) 0.85276(9) 0.0218 Uani 1.0000 C C3 1.03223(13) 0.7093(3) 0.89934(10) 0.0236 Uani 1.0000 C O4 0.98853(9) 0.4761(2) 0.90166(8) 0.0325 Uani 1.0000 O C5 0.89837(13) 0.5078(4) 0.88312(11) 0.0253 Uani 1.0000 C C6 1.12326(12) 0.6622(4) 0.86972(10) 0.0280 Uani 1.0000 C N7 1.17646(10) 0.8825(3) 0.87016(8) 0.0265 Uani 1.0000 N C8 1.23146(13) 0.9302(4) 0.92556(10) 0.0277 Uani 1.0000 C O9 1.23594(9) 0.7976(3) 0.98096(7) 0.0359 Uani 1.0000 O C10 1.28844(14) 1.1520(4) 0.91690(12) 0.0382 Uani 1.0000 C O11 0.99245(8) 0.8649(2) 0.77563(6) 0.0260 Uani 1.0000 O C12 0.81349(12) 0.8364(3) 0.81569(9) 0.0223 Uani 1.0000 C N13 0.76255(10) 1.0272(3) 0.83168(8) 0.0270 Uani 1.0000 N C14 0.69186(12) 1.1100(4) 0.78430(10) 0.0302 Uani 1.0000 C C15 0.62532(12) 1.2545(4) 0.82810(10) 0.0258 Uani 1.0000 C C16 0.59055(13) 1.4675(4) 0.79875(11) 0.0290 Uani 1.0000 C C17 0.52648(15) 1.5955(4) 0.83627(11) 0.0364 Uani 1.0000 C C18 0.49727(14) 1.5138(4) 0.90401(11) 0.0369 Uani 1.0000 C C19 0.53254(14) 1.3028(4) 0.93495(12) 0.0344 Uani 1.0000 C C20 0.59632(13) 1.1732(4) 0.89712(11) 0.0308 Uani 1.0000 C O21 0.80707(9) 0.7148(3) 0.75824(7) 0.0310 Uani 1.0000 O O22 0.86476(8) 0.9015(3) 0.94242(6) 0.0267 Uani 1.0000 O H21 0.9824 1.0484 0.8695 0.0249 Uiso 1.0000 H H31 1.0346 0.7770 0.9505 0.0275 Uiso 1.0000 H H51 0.8628 0.4350 0.9230 0.0314 Uiso 1.0000 H H52 0.8863 0.4194 0.8351 0.0314 Uiso 1.0000 H H61 1.1528 0.5378 0.9019 0.0351 Uiso 1.0000 H H62 1.1197 0.6002 0.8182 0.0351 Uiso 1.0000 H H101 1.3496 1.1069 0.9211 0.0460 Uiso 1.0000 H H102 1.2828 1.2342 0.8676 0.0460 Uiso 1.0000 H H103 1.2789 1.2808 0.9548 0.0460 Uiso 1.0000 H H141 0.7154 1.2151 0.7437 0.0369 Uiso 1.0000 H H142 0.6659 0.9606 0.7617 0.0369 Uiso 1.0000 H H161 0.6108 1.5234 0.7492 0.0370 Uiso 1.0000 H H171 0.5021 1.7491 0.8141 0.0440 Uiso 1.0000 H H181 0.4517 1.6088 0.9321 0.0440 Uiso 1.0000 H H191 0.5124 1.2389 0.9851 0.0400 Uiso 1.0000 H H201 0.6219 1.0239 0.9186 0.0366 Uiso 1.0000 H H3 0.7724 1.0854 0.8803 0.0500 Uiso 1.0000 H H6 0.8250 0.7940 0.9658 0.0500 Uiso 1.0000 H H12 1.1800 0.9957 0.8266 0.0500 Uiso 1.0000 H H1 0.9932 0.6928 0.7664 0.0500 Uiso 1.0000 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 C1 0.0245(10) 0.0238(9) 0.0187(8) -0.0028(9) 0.0037(8) -0.0028(8) C2 0.0248(10) 0.0213(8) 0.0192(8) -0.0016(9) 0.0011(8) -0.0008(8) C3 0.0272(10) 0.0211(8) 0.0226(9) -0.0026(9) -0.0003(8) 0.0003(8) O4 0.0278(8) 0.0248(7) 0.0450(8) -0.0026(7) -0.0068(7) 0.0071(7) C5 0.0249(10) 0.0249(10) 0.0263(10) -0.0029(9) 0.0005(8) 0.0003(9) C6 0.0288(10) 0.0282(10) 0.0270(10) 0.0034(10) -0.0045(9) -0.0033(9) N7 0.0221(8) 0.0322(8) 0.0252(8) -0.0006(8) -0.0029(7) 0.0027(8) C8 0.0217(10) 0.0331(11) 0.0284(10) 0.0027(9) -0.0032(8) 0.0007(10) O9 0.0339(8) 0.0421(9) 0.0316(7) -0.0004(8) -0.0118(6) 0.0080(7) C10 0.0323(12) 0.0396(12) 0.0428(12) -0.0034(11) -0.0087(10) 0.0039(11) O11 0.0267(7) 0.0315(7) 0.0198(6) 0.0008(7) 0.0037(6) 0.0033(6) C12 0.0216(9) 0.0232(9) 0.0222(10) -0.0032(9) 0.0032(8) -0.0013(8) N13 0.0239(8) 0.0292(8) 0.0278(8) 0.0028(8) -0.0027(7) -0.0039(8) C14 0.0256(10) 0.0372(10) 0.0276(10) 0.0032(10) -0.0002(8) 0.0000(9) C15 0.0228(10) 0.0295(9) 0.0252(9) -0.0032(9) -0.0023(8) -0.0022(9) C16 0.0284(11) 0.0308(10) 0.0279(10) 0.0009(10) -0.0012(9) -0.0004(9) C17 0.0377(12) 0.0365(11) 0.0351(11) 0.0071(11) -0.0083(10) -0.0029(10) C18 0.0291(11) 0.0471(13) 0.0344(11) 0.0054(11) -0.0015(10) -0.0111(11) C19 0.0324(11) 0.0405(11) 0.0304(10) -0.0035(11) 0.0039(9) -0.0016(10) C20 0.0327(11) 0.0298(10) 0.0299(10) -0.0009(9) -0.0014(9) 0.0010(9) O21 0.0299(8) 0.0380(7) 0.0251(7) 0.0014(7) -0.0014(6) -0.0076(7) O22 0.0281(7) 0.0316(7) 0.0204(6) -0.0023(7) 0.0040(6) -0.0042(6) loop_ _atom_type_symbol _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C 0.0033 0.0016 'International Tables Vol C 4.2.6.8 and 6.1.1.4' H 0.0000 0.0000 'International Tables Vol C 4.2.6.8 and 6.1.1.4' O 0.0106 0.0060 'International Tables Vol C 4.2.6.8 and 6.1.1.4' N 0.0061 0.0033 'International Tables Vol C 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C2 C1 C5 102.01(15) ? C2 C1 C12 113.72(14) ? C5 C1 C12 111.54(15) ? C2 C1 O22 104.54(14) ? C5 C1 O22 112.69(15) ? C12 C1 O22 111.80(15) ? C1 C2 C3 101.14(14) ? C1 C2 O11 113.85(14) ? C3 C2 O11 114.10(15) ? C1 C2 H21 109.7 no C3 C2 H21 109.4 no O11 C2 H21 108.5 no C2 C3 O4 105.93(15) ? C2 C3 C6 116.01(15) ? O4 C3 C6 106.97(15) ? C2 C3 H31 108.3 no O4 C3 H31 108.5 no C6 C3 H31 110.9 no C3 O4 C5 109.77(14) ? C1 C5 O4 106.88(16) ? C1 C5 H51 112.7 no O4 C5 H51 108.5 no C1 C5 H52 110.5 no O4 C5 H52 108.6 no H51 C5 H52 109.6 no C3 C6 N7 112.17(15) ? C3 C6 H61 109.1 no N7 C6 H61 107.5 no C3 C6 H62 109.7 no N7 C6 H62 108.5 no H61 C6 H62 109.8 no C6 N7 C8 121.40(16) ? C6 N7 H12 122.4 no C8 N7 H12 115.7 no N7 C8 O9 121.84(19) ? N7 C8 C10 116.61(17) ? O9 C8 C10 121.55(18) ? C8 C10 H101 110.7 no C8 C10 H102 113.8 no H101 C10 H102 105.3 no C8 C10 H103 114.2 no H101 C10 H103 105.6 no H102 C10 H103 106.6 no C2 O11 H1 102.4 no C1 C12 N13 114.19(15) ? C1 C12 O21 122.15(16) ? N13 C12 O21 123.65(17) ? C12 N13 C14 123.60(16) ? C12 N13 H3 111.7 no C14 N13 H3 124.1 no N13 C14 C15 111.03(15) ? N13 C14 H141 109.7 no C15 C14 H141 109.4 no N13 C14 H142 106.7 no C15 C14 H142 111.6 no H141 C14 H142 108.3 no C14 C15 C16 119.78(17) ? C14 C15 C20 121.25(17) ? C16 C15 C20 118.95(19) ? C15 C16 C17 120.64(19) ? C15 C16 H161 118.6 no C17 C16 H161 120.7 no C16 C17 C18 120.4(2) ? C16 C17 H171 119.5 no C18 C17 H171 120.1 no C17 C18 C19 119.8(2) ? C17 C18 H181 120.6 no C19 C18 H181 119.6 no C18 C19 C20 119.90(19) ? C18 C19 H191 121.4 no C20 C19 H191 118.7 no C15 C20 C19 120.33(19) ? C15 C20 H201 119.1 no C19 C20 H201 120.6 no C1 O22 H6 103.7 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag C1 C2 1.551(2) yes C1 C5 1.525(3) yes C1 C12 1.531(3) yes C1 O22 1.421(2) yes C2 C3 1.518(3) yes C2 O11 1.421(2) yes C2 H21 0.993 no C3 O4 1.438(2) yes C3 C6 1.522(3) yes C3 H31 0.996 no O4 C5 1.436(2) yes C5 H51 0.988 no C5 H52 1.009 no C6 N7 1.453(2) yes C6 H61 1.001 no C6 H62 0.991 no N7 C8 1.334(2) yes N7 H12 1.001 no C8 O9 1.236(2) yes C8 C10 1.501(3) yes C10 H101 0.975 no C10 H102 1.001 no C10 H103 0.992 no O11 H1 0.952 no C12 N13 1.333(2) yes C12 O21 1.235(2) yes N13 C14 1.454(2) yes N13 H3 0.946 no C14 C15 1.515(3) yes C14 H141 0.998 no C14 H142 0.994 no C15 C16 1.383(3) ? C15 C20 1.397(3) ? C16 C17 1.386(3) ? C16 H161 0.996 no C17 C18 1.378(3) ? C17 H171 1.000 no C18 C19 1.388(3) ? C18 H181 1.009 no C19 C20 1.389(3) ? C19 H191 1.020 no C20 H201 0.983 no O22 H6 0.947 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O22 H6 O9 2_467 0.95 1.75 2.649(2) 158 yes N7 H12 O21 3_756 1.00 1.95 2.953(2) 177 yes O11 H1 O11 3_746 0.95 1.95 2.886(2) 166 yes _cod_database_fobs_code 2205131