#------------------------------------------------------------------------------ #$Date: 2025-08-19 11:43:10 +0100 (Tue, 19 Aug 2025) $ #$Revision: 301803 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/51/2205161.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2205161 loop_ _publ_author_name 'Sun, Yu-Xi' 'Gao, Gen-Zhi' 'Zhang, Rui' 'Pei, Hong-Xia' _publ_section_title ; Azido[1-(isobutylaminomethyliminomethyl)-2-naphtholato]nickel(II) ; _journal_issue 2 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first m397 _journal_page_last m398 _journal_paper_doi 10.1107/S1600536805001881 _journal_volume 61 _journal_year 2005 _chemical_formula_iupac '[Ni (C15 H17 N2 O) (N3)]' _chemical_formula_moiety 'C15 H17 N5 Ni O' _chemical_formula_sum 'C15 H17 N5 Ni O' _chemical_formula_weight 342.05 _chemical_name_systematic ; Azido[1-(isobutylaminomethyliminomethyl)-2-naphtholato]nickel(II) ; _space_group_IT_number 61 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall '-P 2ac 2ab' _symmetry_space_group_name_H-M 'P b c a' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 7.5760(10) _cell_length_b 13.300(2) _cell_length_c 30.306(2) _cell_measurement_reflns_used 7800 _cell_measurement_temperature 298(2) _cell_measurement_theta_max 27.533 _cell_measurement_theta_min 2.688 _cell_volume 3053.7(6) _computing_cell_refinement SMART _computing_data_collection 'SMART (Bruker, 2002)' _computing_data_reduction 'SAINT (Bruker, 2002)' _computing_molecular_graphics 'SHELXTL (Bruker, 2002)' _computing_publication_material SHELXTL _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_device_type 'Bruker APEX area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0261 _diffrn_reflns_av_sigmaI/netI 0.0179 _diffrn_reflns_limit_h_max 9 _diffrn_reflns_limit_h_min -9 _diffrn_reflns_limit_k_max 16 _diffrn_reflns_limit_k_min -16 _diffrn_reflns_limit_l_max 39 _diffrn_reflns_limit_l_min -39 _diffrn_reflns_number 24371 _diffrn_reflns_theta_full 27.50 _diffrn_reflns_theta_max 27.50 _diffrn_reflns_theta_min 1.34 _diffrn_standards_decay_% 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 1.279 _exptl_absorpt_correction_T_max 0.8827 _exptl_absorpt_correction_T_min 0.7080 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 1996)' _exptl_crystal_colour green _exptl_crystal_density_diffrn 1.488 _exptl_crystal_density_meas ? _exptl_crystal_density_method . _exptl_crystal_description block _exptl_crystal_F_000 1424 _exptl_crystal_size_max 0.29 _exptl_crystal_size_mid 0.12 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.966 _refine_diff_density_min -0.307 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.077 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 201 _refine_ls_number_reflns 3488 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.077 _refine_ls_R_factor_all 0.0534 _refine_ls_R_factor_gt 0.0433 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0564P)^2^+2.2975P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1134 _refine_ls_wR_factor_ref 0.1208 _reflns_number_gt 2859 _reflns_number_total 3488 _reflns_threshold_expression I>2\s(I) _cod_data_source_file su6160.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2205161 _cod_database_fobs_code 2205161 loop_ _symmetry_equiv_pos_as_xyz x,y,z 1/2-x,-y,1/2+z 1/2+x,1/2-y,-z -x,1/2+y,1/2-z -x,-y,-z 1/2+x,y,1/2-z 1/2-x,1/2+y,z x,1/2-y,1/2+z loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol Ni1 0.60659(5) 0.45725(2) 0.612031(11) 0.04363(14) Uani d . 1 Ni O1 0.5695(3) 0.54969(12) 0.65520(6) 0.0466(4) Uani d . 1 O N1 0.7007(3) 0.36348(14) 0.64986(7) 0.0429(5) Uani d . 1 N N2 0.6465(4) 0.35972(19) 0.56495(8) 0.0605(7) Uani d . 1 N N3 0.5198(4) 0.55043(19) 0.56976(9) 0.0671(8) Uani d . 1 N N4 0.4163(4) 0.61455(18) 0.57709(7) 0.0542(6) Uani d . 1 N N5 0.3196(5) 0.6792(2) 0.58174(10) 0.0843(10) Uani d . 1 N C1 0.7959(5) 0.3942(4) 0.53841(15) 0.0968(14) Uani d . 1 C H1A 0.8154 0.3481 0.5145 0.145 Uiso calc R 1 H H1B 0.8997 0.3974 0.5565 0.145 Uiso calc R 1 H H1C 0.7707 0.4597 0.5267 0.145 Uiso calc R 1 H C2 0.4960(6) 0.3439(3) 0.53510(12) 0.0769(10) Uani d . 1 C H2A 0.4700 0.4054 0.5199 0.115 Uiso calc R 1 H H2B 0.3949 0.3234 0.5519 0.115 Uiso calc R 1 H H2C 0.5250 0.2926 0.5140 0.115 Uiso calc R 1 H C3 0.6747(6) 0.2596(3) 0.58726(13) 0.0787(10) Uani d . 1 C H3A 0.5617 0.2291 0.5941 0.094 Uiso calc R 1 H H3B 0.7386 0.2148 0.5677 0.094 Uiso calc R 1 H C4 0.7751(5) 0.2751(2) 0.62768(11) 0.0616(8) Uani d . 1 C H4A 0.8986 0.2863 0.6208 0.074 Uiso calc R 1 H H4B 0.7661 0.2165 0.6466 0.074 Uiso calc R 1 H C5 0.7124(3) 0.36995(18) 0.69229(9) 0.0421(5) Uani d . 1 C H5 0.7673 0.3170 0.7069 0.051 Uiso calc R 1 H C6 0.6494(3) 0.45042(16) 0.71866(9) 0.0386(5) Uani d . 1 C C7 0.5805(3) 0.53657(17) 0.69782(9) 0.0400(5) Uani d . 1 C C8 0.5189(3) 0.61777(19) 0.72460(9) 0.0463(6) Uani d . 1 C H8 0.4735 0.6750 0.7111 0.056 Uiso calc R 1 H C9 0.5252(4) 0.6129(2) 0.76883(10) 0.0497(6) Uani d . 1 C H9 0.4835 0.6671 0.7852 0.060 Uiso calc R 1 H C10 0.5935(3) 0.5276(2) 0.79150(10) 0.0465(6) Uani d . 1 C C11 0.6001(4) 0.5233(3) 0.83810(11) 0.0591(8) Uani d . 1 C H11 0.5597 0.5777 0.8545 0.071 Uiso calc R 1 H C12 0.6646(5) 0.4407(3) 0.85934(11) 0.0665(9) Uani d . 1 C H12 0.6688 0.4388 0.8900 0.080 Uiso calc R 1 H C13 0.7236(4) 0.3599(3) 0.83498(10) 0.0618(8) Uani d . 1 C H13 0.7674 0.3036 0.8495 0.074 Uiso calc R 1 H C14 0.7194(4) 0.3608(2) 0.78976(9) 0.0503(6) Uani d . 1 C H14 0.7595 0.3049 0.7742 0.060 Uiso calc R 1 H C15 0.6551(3) 0.44500(18) 0.76629(9) 0.0418(5) Uani d . 1 C loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Ni1 0.0501(2) 0.0332(2) 0.0476(2) 0.00406(13) -0.00118(14) 0.00136(13) O1 0.0575(11) 0.0296(8) 0.0527(11) 0.0051(7) -0.0011(8) 0.0029(7) N1 0.0445(12) 0.0307(10) 0.0534(12) 0.0041(8) -0.0008(9) -0.0013(9) N2 0.0790(18) 0.0499(14) 0.0528(14) 0.0126(13) -0.0049(13) -0.0057(11) N3 0.095(2) 0.0549(15) 0.0514(14) 0.0248(15) 0.0025(14) 0.0088(11) N4 0.0746(17) 0.0462(13) 0.0419(12) 0.0049(12) -0.0098(11) 0.0031(10) N5 0.106(2) 0.0742(19) 0.0727(19) 0.0413(19) -0.0108(17) -0.0027(16) C1 0.077(3) 0.113(3) 0.101(3) -0.005(2) 0.022(2) -0.039(3) C2 0.101(3) 0.067(2) 0.063(2) -0.016(2) -0.0063(19) -0.0068(16) C3 0.106(3) 0.0514(18) 0.078(2) 0.0151(19) -0.010(2) -0.0095(17) C4 0.077(2) 0.0414(14) 0.0666(18) 0.0185(14) -0.0023(16) -0.0088(13) C5 0.0385(13) 0.0318(11) 0.0562(15) 0.0012(10) -0.0049(11) 0.0058(10) C6 0.0314(11) 0.0303(11) 0.0542(14) -0.0037(9) -0.0005(10) -0.0003(10) C7 0.0344(12) 0.0314(12) 0.0543(14) -0.0049(9) 0.0000(10) -0.0003(10) C8 0.0437(14) 0.0335(12) 0.0618(17) 0.0009(10) 0.0023(12) -0.0019(11) C9 0.0429(14) 0.0410(14) 0.0652(17) -0.0024(11) 0.0071(12) -0.0118(12) C10 0.0374(13) 0.0479(14) 0.0542(15) -0.0108(11) 0.0007(11) -0.0046(12) C11 0.0530(17) 0.0687(19) 0.0556(17) -0.0132(14) 0.0041(13) -0.0094(15) C12 0.0592(18) 0.088(2) 0.0518(17) -0.0188(18) -0.0028(14) 0.0064(16) C13 0.0571(18) 0.0666(19) 0.0616(18) -0.0114(15) -0.0084(14) 0.0173(15) C14 0.0465(15) 0.0458(14) 0.0586(16) -0.0079(12) -0.0038(12) 0.0068(12) C15 0.0315(12) 0.0408(13) 0.0530(14) -0.0106(10) -0.0021(10) 0.0024(11) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Ni Ni 0.3393 1.1124 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag O1 Ni1 N1 94.00(10) y O1 Ni1 N3 89.50(10) y N1 Ni1 N3 176.00(10) y O1 Ni1 N2 179.10(10) y N1 Ni1 N2 86.80(10) y N3 Ni1 N2 89.70(10) y C7 O1 Ni1 127.7(2) ? C5 N1 C4 118.9(2) ? C5 N1 Ni1 127.05(17) ? C4 N1 Ni1 114.01(19) ? C1 N2 C2 107.9(3) ? C1 N2 C3 114.4(3) ? C2 N2 C3 105.0(3) ? C1 N2 Ni1 108.3(2) ? C2 N2 Ni1 115.1(2) ? C3 N2 Ni1 106.3(2) ? N4 N3 Ni1 125.1(2) ? N5 N4 N3 175.7(3) ? N2 C1 H1A 109.5 ? N2 C1 H1B 109.5 ? H1A C1 H1B 109.5 ? N2 C1 H1C 109.5 ? H1A C1 H1C 109.5 ? H1B C1 H1C 109.5 ? N2 C2 H2A 109.5 ? N2 C2 H2B 109.5 ? H2A C2 H2B 109.5 ? N2 C2 H2C 109.5 ? H2A C2 H2C 109.5 ? H2B C2 H2C 109.5 ? C4 C3 N2 109.0(3) ? C4 C3 H3A 109.9 ? N2 C3 H3A 109.9 ? C4 C3 H3B 109.9 ? N2 C3 H3B 109.9 ? H3A C3 H3B 108.3 ? C3 C4 N1 107.3(3) ? C3 C4 H4A 110.2 ? N1 C4 H4A 110.2 ? C3 C4 H4B 110.2 ? N1 C4 H4B 110.2 ? H4A C4 H4B 108.5 ? N1 C5 C6 126.0(2) ? N1 C5 H5 117.0 ? C6 C5 H5 117.0 ? C7 C6 C5 119.1(2) ? C7 C6 C15 119.9(2) ? C5 C6 C15 121.0(2) ? O1 C7 C6 125.2(2) ? O1 C7 C8 116.1(2) ? C6 C7 C8 118.8(2) ? C9 C8 C7 121.3(3) ? C9 C8 H8 119.4 ? C7 C8 H8 119.4 ? C8 C9 C10 122.2(3) ? C8 C9 H9 118.9 ? C10 C9 H9 118.9 ? C11 C10 C15 119.7(3) ? C11 C10 C9 121.7(3) ? C15 C10 C9 118.5(3) ? C12 C11 C10 121.0(3) ? C12 C11 H11 119.5 ? C10 C11 H11 119.5 ? C11 C12 C13 119.4(3) ? C11 C12 H12 120.3 ? C13 C12 H12 120.3 ? C14 C13 C12 121.5(3) ? C14 C13 H13 119.3 ? C12 C13 H13 119.3 ? C13 C14 C15 121.2(3) ? C13 C14 H14 119.4 ? C15 C14 H14 119.4 ? C14 C15 C10 117.1(3) ? C14 C15 C6 123.5(2) ? C10 C15 C6 119.3(2) ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag Ni1 O1 1.817(2) y Ni1 N1 1.838(2) y Ni1 N3 1.900(3) y Ni1 N2 1.952(2) y O1 C7 1.306(3) ? N1 C5 1.292(3) ? N1 C4 1.467(3) ? N2 C1 1.462(5) ? N2 C2 1.470(4) ? N2 C3 1.508(4) ? N3 N4 1.180(3) ? N4 N5 1.139(4) ? C1 H1A 0.9600 ? C1 H1B 0.9600 ? C1 H1C 0.9600 ? C2 H2A 0.9600 ? C2 H2B 0.9600 ? C2 H2C 0.9600 ? C3 C4 1.456(5) ? C3 H3A 0.9700 ? C3 H3B 0.9700 ? C4 H4A 0.9700 ? C4 H4B 0.9700 ? C5 C6 1.419(3) ? C5 H5 0.9300 ? C6 C7 1.409(3) ? C6 C15 1.446(4) ? C7 C8 1.429(3) ? C8 C9 1.343(4) ? C8 H8 0.9300 ? C9 C10 1.425(4) ? C9 H9 0.9300 ? C10 C11 1.414(4) ? C10 C15 1.417(4) ? C11 C12 1.365(5) ? C11 H11 0.9300 ? C12 C13 1.378(5) ? C12 H12 0.9300 ? C13 C14 1.371(4) ? C13 H13 0.9300 ? C14 C15 1.413(4) ? C14 H14 0.9300 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag C1 H1C N3 . 0.96 2.60 3.098(5) 112 ? C2 H2A N3 . 0.96 2.48 2.946(5) 110 ? C4 H4B O1 7_645 0.97 2.56 3.327(3) 136 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion N1 Ni1 O1 C7 -10.8(2) N3 Ni1 O1 C7 171.3(2) O1 Ni1 N1 C5 5.0(2) N2 Ni1 N1 C5 -175.4(2) O1 Ni1 N1 C4 -172.3(2) N2 Ni1 N1 C4 7.3(2) N1 Ni1 N2 C1 -106.7(3) N3 Ni1 N2 C1 71.2(3) N1 Ni1 N2 C2 132.5(2) N3 Ni1 N2 C2 -49.6(2) N1 Ni1 N2 C3 16.7(2) N3 Ni1 N2 C3 -165.4(3) O1 Ni1 N3 N4 -28.1(3) N2 Ni1 N3 N4 152.3(3) C1 N2 C3 C4 81.9(4) C2 N2 C3 C4 -160.0(3) Ni1 N2 C3 C4 -37.5(4) N2 C3 C4 N1 43.6(4) C5 N1 C4 C3 152.1(3) Ni1 N1 C4 C3 -30.4(3) C4 N1 C5 C6 179.3(3) Ni1 N1 C5 C6 2.1(4) N1 C5 C6 C7 -6.0(4) N1 C5 C6 C15 174.0(2) Ni1 O1 C7 C6 9.9(4) Ni1 O1 C7 C8 -170.89(17) C5 C6 C7 O1 -0.2(4) C15 C6 C7 O1 179.8(2) C5 C6 C7 C8 -179.4(2) C15 C6 C7 C8 0.6(3) O1 C7 C8 C9 -179.5(2) C6 C7 C8 C9 -0.2(4) C7 C8 C9 C10 0.2(4) C8 C9 C10 C11 179.8(3) C8 C9 C10 C15 -0.6(4) C15 C10 C11 C12 -0.1(4) C9 C10 C11 C12 179.5(3) C10 C11 C12 C13 -0.3(5) C11 C12 C13 C14 0.1(5) C12 C13 C14 C15 0.4(5) C13 C14 C15 C10 -0.8(4) C13 C14 C15 C6 179.3(3) C11 C10 C15 C14 0.6(4) C9 C10 C15 C14 -179.0(2) C11 C10 C15 C6 -179.4(2) C9 C10 C15 C6 1.0(3) C7 C6 C15 C14 178.9(2) C5 C6 C15 C14 -1.1(4) C7 C6 C15 C10 -1.0(3) C5 C6 C15 C10 179.0(2) loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 PubChem 168308819