#------------------------------------------------------------------------------ #$Date: 2017-10-13 07:09:21 +0100 (Fri, 13 Oct 2017) $ #$Revision: 201973 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/51/2205180.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2205180 loop_ _publ_author_name 'Liang-Zhong Xu' 'Kai Li' 'Guan-Ping Yu' 'Guo-Dong Si' 'Cheng-Long Yu' _publ_section_title ; 2-Oxo-2-phenylethyl morpholine-4-carbodithioate ; _journal_issue 2 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o215 _journal_page_last o216 _journal_paper_doi 10.1107/S1600536804033999 _journal_volume 61 _journal_year 2005 _chemical_formula_iupac 'C13 H15 N O2 S2' _chemical_formula_moiety 'C13 H15 N O2 S2' _chemical_formula_sum 'C13 H15 N O2 S2' _chemical_formula_weight 281.38 _chemical_name_systematic ; 2-Oxo-2-phenylethyl morpholine-4-carbodithioate ; _space_group_IT_number 61 _symmetry_cell_setting orthorhombic _symmetry_space_group_name_Hall '-P 2ac 2ab' _symmetry_space_group_name_H-M 'P b c a' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.00 _cell_angle_gamma 90.00 _cell_formula_units_Z 8 _cell_length_a 9.5294(9) _cell_length_b 8.4805(8) _cell_length_c 33.362(3) _cell_measurement_reflns_used 2566 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 20.07 _cell_measurement_theta_min 2.44 _cell_volume 2696.1(4) _computing_cell_refinement SMART _computing_data_collection 'SMART (Bruker, 1998)' _computing_data_reduction 'SAINT (Bruker, 1999)' _computing_molecular_graphics 'SHELXTL (Bruker, 1999)' _computing_publication_material SHELXTL _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 1.000 _diffrn_measured_fraction_theta_max 1.000 _diffrn_measurement_device_type 'Bruker SMART 1000 CCD area-detector' _diffrn_measurement_method '\f and \w' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0527 _diffrn_reflns_av_sigmaI/netI 0.0568 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min -10 _diffrn_reflns_limit_l_max 39 _diffrn_reflns_limit_l_min -38 _diffrn_reflns_number 13423 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 1.22 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.388 _exptl_absorpt_correction_T_max 0.933 _exptl_absorpt_correction_T_min 0.801 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(SADABS; Sheldrick, 1996)' _exptl_crystal_colour colorless _exptl_crystal_density_diffrn 1.386 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 1184 _exptl_crystal_size_max 0.54 _exptl_crystal_size_mid 0.34 _exptl_crystal_size_min 0.18 _refine_diff_density_max 0.156 _refine_diff_density_min -0.163 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.866 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 163 _refine_ls_number_reflns 2367 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.866 _refine_ls_R_factor_all 0.0525 _refine_ls_R_factor_gt 0.0268 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0531P)^2^] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0645 _refine_ls_wR_factor_ref 0.0957 _reflns_number_gt 1349 _reflns_number_total 2367 _reflns_threshold_expression I>2\s(I) _cod_data_source_file wn6317.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius The following automatic conversions were performed: '_symmetry_cell_setting' value 'Orthorhombic' changed to 'orthorhombic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 2205180 _cod_database_fobs_code 2205180 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' '-x, -y, -z' 'x-1/2, y, -z-1/2' 'x, -y-1/2, z-1/2' '-x-1/2, y-1/2, z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_type_symbol S1 0.57422(8) 1.10672(9) 0.35357(2) 0.0678(3) Uani d . 1 S S2 0.35387(8) 1.02771(8) 0.41461(2) 0.0590(2) Uani d . 1 S N1 0.5458(2) 1.2449(2) 0.42437(6) 0.0505(5) Uani d . 1 N O1 0.69414(19) 1.3915(2) 0.48758(5) 0.0632(5) Uani d . 1 O O2 0.4933(2) 0.7222(2) 0.39559(5) 0.0667(5) Uani d . 1 O C1 0.5011(3) 1.1378(3) 0.39780(7) 0.0460(6) Uani d . 1 C C2 0.6645(3) 1.3496(3) 0.41651(7) 0.0566(7) Uani d . 1 C H2A 0.6310 1.4562 0.4121 0.068 Uiso calc R 1 H H2B 0.7134 1.3154 0.3925 0.068 Uiso calc R 1 H C3 0.7626(3) 1.3469(3) 0.45140(7) 0.0592(7) Uani d . 1 C H3A 0.8009 1.2416 0.4544 0.071 Uiso calc R 1 H H3B 0.8399 1.4185 0.4463 0.071 Uiso calc R 1 H C4 0.5852(3) 1.2832(3) 0.49581(8) 0.0663(8) Uani d . 1 C H4A 0.5400 1.3118 0.5208 0.080 Uiso calc R 1 H H4B 0.6247 1.1785 0.4990 0.080 Uiso calc R 1 H C5 0.4776(3) 1.2805(3) 0.46287(8) 0.0650(8) Uani d . 1 C H5A 0.4071 1.2011 0.4687 0.078 Uiso calc R 1 H H5B 0.4312 1.3821 0.4613 0.078 Uiso calc R 1 H C6 0.3215(3) 0.9038(3) 0.37217(8) 0.0568(7) Uani d . 1 C H6A 0.2262 0.8642 0.3739 0.068 Uiso calc R 1 H H6B 0.3280 0.9675 0.3481 0.068 Uiso calc R 1 H C7 0.4202(3) 0.7650(3) 0.36808(8) 0.0495(7) Uani d . 1 C C8 0.4194(3) 0.6798(3) 0.32903(7) 0.0489(7) Uani d . 1 C C9 0.5168(3) 0.5621(3) 0.32268(9) 0.0679(8) Uani d . 1 C H9 0.5824 0.5397 0.3425 0.082 Uiso calc R 1 H C10 0.5186(4) 0.4775(4) 0.28767(10) 0.0844(10) Uani d . 1 C H10 0.5844 0.3978 0.2840 0.101 Uiso calc R 1 H C11 0.4235(5) 0.5105(4) 0.25815(10) 0.0870(11) Uani d . 1 C H11 0.4254 0.4541 0.2342 0.104 Uiso calc R 1 H C12 0.3266(4) 0.6251(4) 0.26368(10) 0.0875(11) Uani d . 1 C H12 0.2621 0.6470 0.2435 0.105 Uiso calc R 1 H C13 0.3223(3) 0.7108(3) 0.29932(9) 0.0685(8) Uani d . 1 C H13 0.2545 0.7883 0.3031 0.082 Uiso calc R 1 H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 S1 0.0807(6) 0.0779(5) 0.0446(4) -0.0142(4) 0.0076(4) -0.0054(4) S2 0.0511(4) 0.0578(4) 0.0680(5) -0.0040(4) 0.0059(4) -0.0016(4) N1 0.0476(13) 0.0579(13) 0.0461(13) -0.0058(11) 0.0054(10) -0.0042(11) O1 0.0635(12) 0.0752(12) 0.0507(11) -0.0118(11) 0.0021(10) -0.0103(9) O2 0.0736(13) 0.0661(12) 0.0605(12) 0.0140(10) -0.0214(11) 0.0011(10) C1 0.0447(15) 0.0456(13) 0.0477(15) 0.0064(12) -0.0047(12) 0.0047(12) C2 0.0633(19) 0.0564(16) 0.0500(16) -0.0121(15) 0.0036(14) 0.0032(12) C3 0.0549(18) 0.0684(18) 0.0543(16) -0.0111(14) 0.0042(15) -0.0007(14) C4 0.072(2) 0.079(2) 0.0482(17) -0.0079(18) 0.0132(15) -0.0072(15) C5 0.0547(18) 0.078(2) 0.0622(19) -0.0038(16) 0.0127(15) -0.0172(15) C6 0.0483(17) 0.0519(15) 0.0702(18) -0.0050(14) -0.0125(14) 0.0022(13) C7 0.0438(15) 0.0473(15) 0.0574(17) -0.0035(13) -0.0067(14) 0.0118(13) C8 0.0516(16) 0.0464(15) 0.0488(16) -0.0076(13) -0.0047(14) 0.0096(12) C9 0.072(2) 0.077(2) 0.0547(19) 0.0046(18) 0.0018(16) 0.0070(16) C10 0.101(3) 0.085(2) 0.067(2) 0.005(2) 0.017(2) -0.0037(19) C11 0.129(3) 0.075(2) 0.057(2) -0.030(2) 0.009(2) -0.0003(18) C12 0.114(3) 0.080(2) 0.068(2) -0.028(2) -0.037(2) 0.0129(19) C13 0.081(2) 0.0547(17) 0.070(2) -0.0104(16) -0.0235(17) 0.0084(15) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C1 S2 C6 101.24(12) yes C1 N1 C2 122.6(2) ? C1 N1 C5 125.2(2) ? C2 N1 C5 112.0(2) yes C4 O1 C3 109.21(18) yes N1 C1 S1 124.42(19) yes N1 C1 S2 113.49(18) yes S1 C1 S2 122.09(15) yes N1 C2 C3 109.6(2) ? N1 C2 H2A 109.8 ? C3 C2 H2A 109.8 ? N1 C2 H2B 109.8 ? C3 C2 H2B 109.8 ? H2A C2 H2B 108.2 ? O1 C3 C2 111.7(2) ? O1 C3 H3A 109.3 ? C2 C3 H3A 109.3 ? O1 C3 H3B 109.3 ? C2 C3 H3B 109.3 ? H3A C3 H3B 107.9 ? O1 C4 C5 111.6(2) ? O1 C4 H4A 109.3 ? C5 C4 H4A 109.3 ? O1 C4 H4B 109.3 ? C5 C4 H4B 109.3 ? H4A C4 H4B 108.0 ? N1 C5 C4 109.9(2) ? N1 C5 H5A 109.7 ? C4 C5 H5A 109.7 ? N1 C5 H5B 109.7 ? C4 C5 H5B 109.7 ? H5A C5 H5B 108.2 ? C7 C6 S2 114.88(17) ? C7 C6 H6A 108.5 ? S2 C6 H6A 108.5 ? C7 C6 H6B 108.5 ? S2 C6 H6B 108.5 ? H6A C6 H6B 107.5 ? O2 C7 C8 121.4(2) ? O2 C7 C6 121.6(2) ? C8 C7 C6 116.9(2) ? C9 C8 C13 118.6(3) ? C9 C8 C7 118.8(2) ? C13 C8 C7 122.6(3) ? C10 C9 C8 121.2(3) ? C10 C9 H9 119.4 ? C8 C9 H9 119.4 ? C11 C10 C9 119.9(3) ? C11 C10 H10 120.1 ? C9 C10 H10 120.1 ? C12 C11 C10 120.1(3) ? C12 C11 H11 120.0 ? C10 C11 H11 120.0 ? C11 C12 C13 120.7(3) ? C11 C12 H12 119.7 ? C13 C12 H12 119.7 ? C8 C13 C12 119.6(3) ? C8 C13 H13 120.2 ? C12 C13 H13 120.2 ? loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag S1 C1 1.653(3) yes S2 C1 1.776(3) yes S2 C6 1.790(2) yes N1 C1 1.339(3) yes N1 C2 1.462(3) yes N1 C5 1.471(3) yes O1 C4 1.413(3) yes O1 C3 1.423(3) yes O2 C7 1.208(3) yes C2 C3 1.493(3) yes C2 H2A 0.9700 ? C2 H2B 0.9700 ? C3 H3A 0.9700 ? C3 H3B 0.9700 ? C4 C5 1.503(4) yes C4 H4A 0.9700 ? C4 H4B 0.9700 ? C5 H5A 0.9700 ? C5 H5B 0.9700 ? C6 C7 1.513(3) yes C6 H6A 0.9700 ? C6 H6B 0.9700 ? C7 C8 1.490(3) yes C8 C9 1.380(3) ? C8 C13 1.381(3) ? C9 C10 1.371(4) ? C9 H9 0.9300 ? C10 C11 1.368(4) ? C10 H10 0.9300 ? C11 C12 1.354(4) ? C11 H11 0.9300 ? C12 C13 1.394(4) ? C12 H12 0.9300 ? C13 H13 0.9300 ? loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag C2 H2B S1 0.97 2.57 3.065(3) 112 yes C5 H5A S2 0.97 2.38 2.928(6) 115 yes C6 H6B S1 0.97 2.63 3.024(3) 104 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C2 N1 C1 S1 1.2(3) C5 N1 C1 S1 176.4(2) C2 N1 C1 S2 -179.28(17) C5 N1 C1 S2 -4.1(3) C6 S2 C1 N1 178.53(17) C6 S2 C1 S1 -1.95(18) C1 N1 C2 C3 -131.3(2) C5 N1 C2 C3 52.9(3) C4 O1 C3 C2 61.4(3) N1 C2 C3 O1 -57.5(3) C3 O1 C4 C5 -60.5(3) C1 N1 C5 C4 132.1(2) C2 N1 C5 C4 -52.3(3) O1 C4 C5 N1 56.2(3) C1 S2 C6 C7 77.46(19) S2 C6 C7 O2 15.6(3) S2 C6 C7 C8 -166.61(18) O2 C7 C8 C9 -8.2(4) C6 C7 C8 C9 174.0(2) O2 C7 C8 C13 169.9(2) C6 C7 C8 C13 -7.9(3) C13 C8 C9 C10 0.4(4) C7 C8 C9 C10 178.5(2) C8 C9 C10 C11 0.6(5) C9 C10 C11 C12 -0.8(5) C10 C11 C12 C13 0.0(5) C9 C8 C13 C12 -1.2(4) C7 C8 C13 C12 -179.2(2) C11 C12 C13 C8 1.0(4) loop_ _cod_related_entry_id _cod_related_entry_database _cod_related_entry_code 1 ChemSpider 668001