#------------------------------------------------------------------------------ #$Date: 2011-01-02 20:00:31 +0000 (Sun, 02 Jan 2011) $ #$Revision: 5310 $ #$URL: svn://www.crystallography.net/cod/cif/2/2205212.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2205212 loop_ _publ_author_name 'Huo, Li-Hua' 'Cheng, Xiao Li' 'Zhao, Hui' 'Ng, Seik Weng' _publ_section_title ; catena-Poly[[diaqua[3-(2-pyridyl)-1H-pyrazole-\kN^2^]cadmium(II)]- \m-squarato-\k^2^O:O'] ; _journal_issue 3 _journal_name_full 'Acta Crystallographica, Section E' _journal_page_first m460 _journal_page_last m462 _journal_volume 61 _journal_year 2005 _chemical_formula_iupac '[Cd (C4 O4) (C8 H7 N3) (H2 O)2]' _chemical_formula_moiety 'C12 H11 Cd N3 O6' _chemical_formula_sum 'C12 H11 Cd N3 O6' _chemical_formula_weight 405.64 _chemical_name_systematic ; catena-Poly[[diaqua[3-(2-pyridyl)-1H-pyrazole-\kN^2^]cadmium(II)]- \m-squarato-\k^2^O:O'] ; _symmetry_cell_setting triclinic _symmetry_space_group_name_Hall '-P 1' _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 104.87(3) _cell_angle_beta 97.27(3) _cell_angle_gamma 93.29(3) _cell_formula_units_Z 2 _cell_length_a 6.0660(10) _cell_length_b 8.643(2) _cell_length_c 13.272(3) _cell_measurement_reflns_used 6304 _cell_measurement_temperature 295(2) _cell_measurement_theta_max 27.5 _cell_measurement_theta_min 3.2 _cell_volume 664.2(2) _computing_cell_refinement RAPID-AUTO _computing_data_collection 'RAPID-AUTO (Rigaku, 1998)' _computing_data_reduction 'CrystalStructure (Rigaku/MSC, 2002)' _computing_molecular_graphics 'ORTEPII (Johnson, 1976)' _computing_publication_material SHELXL97 _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 295(2) _diffrn_measured_fraction_theta_full 0.97 _diffrn_measured_fraction_theta_max 0.97 _diffrn_measurement_device_type 'Rigaki R-AXIS RAPID IP' _diffrn_measurement_method \w _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.013 _diffrn_reflns_av_sigmaI/netI 0.016 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_h_min -7 _diffrn_reflns_limit_k_max 11 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 17 _diffrn_reflns_limit_l_min -17 _diffrn_reflns_number 6388 _diffrn_reflns_theta_full 27.5 _diffrn_reflns_theta_max 27.5 _diffrn_reflns_theta_min 3.2 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 0 _diffrn_standards_interval_time 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 1.680 _exptl_absorpt_correction_T_max 0.737 _exptl_absorpt_correction_T_min 0.504 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details '(ABSCOR; Higashi, 1995)' _exptl_crystal_colour Yellow _exptl_crystal_density_diffrn 2.028 _exptl_crystal_density_method 'not measured' _exptl_crystal_description Prism _exptl_crystal_F_000 400 _exptl_crystal_size_max 0.38 _exptl_crystal_size_mid 0.25 _exptl_crystal_size_min 0.18 _refine_diff_density_max 0.45 _refine_diff_density_min -0.41 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.34 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 212 _refine_ls_number_reflns 2938 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.34 _refine_ls_R_factor_all 0.024 _refine_ls_R_factor_gt 0.022 _refine_ls_shift/su_max 0.001 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.0287P)^2^+0.7719P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.072 _refine_ls_wR_factor_ref 0.073 _reflns_number_gt 2774 _reflns_number_total 2938 _reflns_threshold_expression I>2\s(I) _[local]_cod_data_source_file bt6598.cif _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic' according to '/home/saulius/struct/CIF-dictionaries/cif_core.dic' dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_enum 1527 2010-12-29 10:47:43Z saulius ; _cod_database_code 2205212 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_calc_flag _atom_site_refinement_flags _atom_site_occupancy _atom_site_disorder_assembly _atom_site_disorder_group _atom_site_type_symbol Cd1 0.62460(3) 0.71725(2) 0.80709(2) 0.02507(8) Uani d . 1 . . Cd O1w 0.420(2) 0.8281(9) 0.9450(7) 0.033(2) Uani d P 0.59(3) A 1 O O1w' 0.525(4) 0.8390(10) 0.9700(10) 0.039(3) Uani d P 0.41(3) A 2 O O2w 0.4143(4) 0.4914(3) 0.7966(2) 0.0327(5) Uani d . 1 A . O O1 0.9381(4) 0.6824(3) 0.9044(2) 0.0411(6) Uani d . 1 A . O O2 0.6527(4) 0.3684(3) 0.9353(2) 0.0333(5) Uani d . 1 . . O O3 0.7597(3) 0.5917(3) 0.6483(2) 0.0287(4) Uani d . 1 A . O O4 0.6985(4) 0.6391(3) 0.4110(2) 0.0374(6) Uani d . 1 . . O N1 0.7774(4) 0.9589(3) 0.7895(2) 0.0249(5) Uani d . 1 A . N N2 0.3586(4) 0.8138(3) 0.7008(2) 0.0261(5) Uani d . 1 A . N N3 0.1620(4) 0.7612(3) 0.6383(2) 0.0305(6) Uani d . 1 . . N C1 0.9790(5) 1.0326(4) 0.8361(2) 0.0330(7) Uani d . 1 . . C C2 1.0708(5) 1.1665(4) 0.8135(3) 0.0359(7) Uani d . 1 A . C C3 0.9493(6) 1.2308(4) 0.7418(3) 0.0356(7) Uani d . 1 . . C C4 0.7405(5) 1.1580(4) 0.6940(2) 0.0289(6) Uani d . 1 A . C C5 0.6599(5) 1.0208(3) 0.7188(2) 0.0221(5) Uani d . 1 . . C C6 0.4417(5) 0.9355(3) 0.6681(2) 0.0224(5) Uani d . 1 A . C C7 0.2960(5) 0.9607(4) 0.5848(3) 0.0329(7) Uani d . 1 . . C C8 0.1198(5) 0.8465(4) 0.5687(3) 0.0355(7) Uani d . 1 A . C C9 0.9687(5) 0.5809(4) 0.9562(2) 0.0274(6) Uani d . 1 . . C C10 0.8420(5) 0.4410(4) 0.9708(2) 0.0264(6) Uani d . 1 . . C C11 0.6177(5) 0.5418(3) 0.5664(2) 0.0229(5) Uani d . 1 . . C C12 0.5917(5) 0.5632(3) 0.4599(2) 0.0245(6) Uani d . 1 . . C H1w1 0.2812 0.8127 0.9216 0.040 Uiso calc PR 0.59(3) A 1 H H1w2 0.4473 0.7830 0.9945 0.040 Uiso calc PR 0.59(3) A 1 H H1w3 0.4228 0.7789 0.9830 0.047 Uiso calc PR 0.41(3) A 2 H H1w4 0.6382 0.8530 1.0169 0.047 Uiso calc PR 0.41(3) A 2 H H2w1 0.3836 0.4372 0.7326 0.039 Uiso calc R 1 . . H H2w2 0.4852 0.4363 0.8322 0.039 Uiso calc R 1 . . H H3n 0.0754 0.6831 0.6426 0.037 Uiso calc R 1 A . H H1 1.0601 0.9911 0.8858 0.040 Uiso calc R 1 A . H H2 1.2125 1.2130 0.8461 0.043 Uiso calc R 1 . . H H3 1.0073 1.3222 0.7259 0.043 Uiso calc R 1 A . H H4 0.6551 1.2000 0.6459 0.035 Uiso calc R 1 . . H H7 0.3145 1.0381 0.5484 0.040 Uiso calc R 1 A . H H8 -0.0064 0.8313 0.5183 0.043 Uiso calc R 1 . . H loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 Cd1 0.02630(10) 0.02510(10) 0.02580(10) -0.00070(10) 0.00010(10) 0.01280(10) O1w 0.038(5) 0.034(3) 0.032(3) 0.008(3) 0.008(3) 0.014(2) O1w' 0.042(8) 0.042(4) 0.033(4) -0.011(4) 0.011(4) 0.011(3) O2w 0.0330(10) 0.0330(10) 0.0330(10) -0.0060(10) -0.0020(10) 0.0150(10) O1 0.04570(10) 0.0360(10) 0.0440(10) -0.0050(10) -0.0160(10) 0.0260(10) O2 0.03240(10) 0.0380(10) 0.0300(10) -0.0040(10) -0.0030(10) 0.0160(10) O3 0.02360(10) 0.0380(10) 0.0230(10) -0.0050(10) -0.0010(10) 0.0070(10) O4 0.03530(10) 0.0470(10) 0.0290(10) -0.0190(10) -0.0020(10) 0.0170(10) N1 0.02210(10) 0.0250(10) 0.0280(10) -0.0010(10) -0.0010(10) 0.0090(10) N2 0.02070(10) 0.0290(10) 0.0300(10) -0.0020(10) -0.0020(10) 0.0110(10) N3 0.02050(10) 0.0320(10) 0.0370(10) -0.0060(10) 0.0000(10) 0.0070(10) C1 0.0269(2) 0.039(2) 0.031(2) 0.0000(10) -0.0050(10) 0.0080(10) C2 0.0242(2) 0.038(2) 0.039(2) -0.0100(10) 0.0010(10) 0.0020(10) C3 0.0341(2) 0.032(2) 0.039(2) -0.0100(10) 0.0090(10) 0.0070(10) C4 0.0329(2) 0.0250(10) 0.032(2) 0.0010(10) 0.0050(10) 0.0120(10) C5 0.02160(10) 0.0220(10) 0.0240(10) 0.0020(10) 0.0030(10) 0.0070(10) C6 0.01940(10) 0.0230(10) 0.0260(10) 0.0010(10) 0.0030(10) 0.0080(10) C7 0.0268(2) 0.039(2) 0.036(2) -0.0020(10) -0.0040(10) 0.0180(10) C8 0.0242(2) 0.047(2) 0.033(2) 0.0010(10) -0.0060(10) 0.0110(10) C9 0.034(2) 0.0240(10) 0.0230(10) 0.0030(10) -0.0030(10) 0.0090(10) C10 0.034(2) 0.0250(10) 0.0210(10) 0.0020(10) 0.0000(10) 0.0090(10) C11 0.02080(10) 0.0240(10) 0.0230(10) -0.0020(10) 0.0020(10) 0.0060(10) C12 0.0230(10) 0.0250(10) 0.0240(10) -0.0030(10) 0.0010(10) 0.0060(10) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cd Cd -0.8075 1.2024 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 _geom_angle _geom_angle_publ_flag O1 Cd1 O3 . . 91.40(10) yes O1 Cd1 O1w . . 98.9(3) yes O1 Cd1 O1w' . . 83.4(6) no O1 Cd1 O2w . . 100.90(10) yes O1 Cd1 N1 . . 92.10(10) yes O1 Cd1 N2 . . 164.20(10) yes O3 Cd1 O1w . . 168.8(4) yes O3 Cd1 O1w' . . 174.8(6) no O3 Cd1 O2w . . 90.50(10) yes O3 Cd1 N1 . . 87.10(10) yes O3 Cd1 N2 . . 86.10(10) yes O1w Cd1 O2w . . 83.3(3) yes O1w Cd1 N1 . . 96.8(2) yes O1w Cd1 N2 . . 85.1(3) yes O1w' Cd1 O2w . . 91.3(3) no O1w' Cd1 N1 . . 92.3(2) no O1w' Cd1 N2 . . 98.6(6) no O2w Cd1 N1 . . 166.80(10) yes O2w Cd1 N2 . . 94.70(10) yes N1 Cd1 N2 . . 72.30(10) yes C9 O1 Cd1 . . 128.6(2) no C11 O3 Cd1 . . 117.1(2) no C5 N1 C1 . . 118.2(3) no C5 N1 Cd1 . . 115.9(2) no C1 N1 Cd1 . . 125.6(2) no C6 N2 N3 . . 105.3(2) no C6 N2 Cd1 . . 113.1(2) no N3 N2 Cd1 . . 138.6(2) no C8 N3 N2 . . 111.7(3) no N1 C1 C2 . . 122.8(3) no C1 C2 C3 . . 118.9(3) no C4 C3 C2 . . 119.1(3) no C3 C4 C5 . . 118.9(3) no N1 C5 C4 . . 122.0(3) no N1 C5 C6 . . 116.7(2) no C4 C5 C6 . . 121.3(3) no N2 C6 C7 . . 110.6(3) no N2 C6 C5 . . 120.0(2) no C7 C6 C5 . . 129.4(3) no C8 C7 C6 . . 104.8(3) no N3 C8 C7 . . 107.6(3) no O3 C11 C12 . . 135.6(3) no O1 C9 C10 . 2_767 132.4(3) no O1 C9 C10 . . 137.1(3) no C10 C9 C10 2_767 . 90.5(2) no O2 C10 C9 . 2_767 134.8(3) no O2 C10 C9 . . 135.8(3) no C9 C10 C9 2_767 . 89.5(2) no O3 C11 C12 . 2_666 134.0(3) no C12 C11 C12 . 2_666 90.4(2) no O4 C12 C11 . . 136.0(3) no O4 C12 C11 . 2_666 134.5(3) no C11 C12 C11 . 2_666 89.6(2) no Cd1 O1w H1w1 . . 109.5 no Cd1 O1w H1w2 . . 109.5 no Cd1 O1w' H1w3 . . 109.5 no Cd1 O1w' H1w4 . . 109.5 no H1w3 O1w' H1w4 . . 109.5 no Cd1 O2w H2w1 . . 109.5 no Cd1 O2w H2w2 . . 109.5 no H2w1 O2w H2w2 . . 109.5 no C8 N3 H3n . . 124.1 no N2 N3 H3n . . 124.1 no N1 C1 H1 . . 118.6 no C2 C1 H1 . . 118.6 no C1 C2 H2 . . 120.6 no C3 C2 H2 . . 120.6 no C4 C3 H3 . . 120.4 no C2 C3 H3 . . 120.4 no C3 C4 H4 . . 120.5 no C5 C4 H4 . . 120.5 no C8 C7 H7 . . 127.6 no C6 C7 H7 . . 127.6 no N3 C8 H8 . . 126.2 no C7 C8 H8 . . 126.2 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_site_symmetry_2 _geom_bond_distance _geom_bond_publ_flag Cd1 O1 . 2.240(2) yes Cd1 O3 . 2.378(2) yes Cd1 O1w . 2.371(6) yes Cd1 O1w' . 2.314(8) no Cd1 O2w . 2.233(2) yes Cd1 N1 . 2.315(3) yes Cd1 N2 . 2.339(3) yes O1 C9 . 1.255(4) no O2 C10 . 1.250(4) no O3 C11 . 1.261(3) no O4 C12 . 1.244(4) no N1 C5 . 1.343(4) no N1 C1 . 1.342(4) no N2 C6 . 1.334(4) no N2 N3 . 1.346(3) no N3 C8 . 1.332(4) no C1 C2 . 1.373(5) no C2 C3 . 1.378(5) no C3 C4 . 1.380(5) no C4 C5 . 1.388(4) no C5 C6 . 1.469(4) no C6 C7 . 1.396(4) no C7 C8 . 1.369(5) no C9 C10 2_767 1.459(4) no C9 C10 . 1.463(4) no C10 C9 2_767 1.459(4) no C11 C12 . 1.462(4) no C11 C12 2_666 1.467(4) no C12 C11 2_666 1.467(4) no O1w H1w1 . 0.851 no O1w H1w2 . 0.85 no O1w' H1w3 . 0.85 no O1w' H1w4 . 0.85 no O2w H2w1 . 0.85 no O2w H2w2 . 0.85 no N3 H3n . 0.85 no C1 H1 . 0.93 no C2 H2 . 0.93 no C3 H3 . 0.93 no C4 H4 . 0.93 no C7 H7 . 0.93 no C8 H8 . 0.93 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O1w H1w1 O1 1_455 0.85 2.26 3.04(2) 152 yes O1w H1w2 O2 2_667 0.85 1.90 2.661(6) 148 yes O1w' H1w3 O2 2_667 0.85 1.94 2.692(9) 146 yes O2w H2w2 O2 . 0.85 1.84 2.668(3) 165 yes O2w H2w1 O4 2_666 0.85 1.84 2.679(3) 168 yes N3 H3n O3 1_455 0.85 2.05 2.809(3) 149 yes loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion_site_symmetry_1 _geom_torsion_site_symmetry_4 _geom_torsion _geom_torsion_publ_flag O2w Cd1 O1 C9 . . -12.9(3) no O1w' Cd1 O1 C9 . . 77.1(4) no N1 Cd1 O1 C9 . . 169.2(3) no N2 Cd1 O1 C9 . . 175.7(3) no O1w Cd1 O1 C9 . . 72.0(4) no O3 Cd1 O1 C9 . . -103.6(3) no O2w Cd1 O3 C11 . . 60.8(2) no O1 Cd1 O3 C11 . . 161.7(2) no N1 Cd1 O3 C11 . . -106.3(2) no N2 Cd1 O3 C11 . . -33.9(2) no O1w Cd1 O3 C11 . . 4.5(8) no O2w Cd1 N1 C5 . . -1.6(5) no O1 Cd1 N1 C5 . . 169.2(2) no O1w' Cd1 N1 C5 . . -107.3(7) no N2 Cd1 N1 C5 . . -9.0(2) no O1w Cd1 N1 C5 . . -91.6(4) no O3 Cd1 N1 C5 . . 77.8(2) no O2w Cd1 N1 C1 . . -175.2(3) no O1 Cd1 N1 C1 . . -4.5(3) no O1w' Cd1 N1 C1 . . 79.0(7) no N2 Cd1 N1 C1 . . 177.4(3) no O1w Cd1 N1 C1 . . 94.8(4) no O3 Cd1 N1 C1 . . -95.8(3) no O2w Cd1 N2 C6 . . -166.0(2) no O1 Cd1 N2 C6 . . 5.6(5) no O1w' Cd1 N2 C6 . . 102.0(4) no N1 Cd1 N2 C6 . . 12.3(2) no O1w Cd1 N2 C6 . . 111.1(4) no O3 Cd1 N2 C6 . . -75.8(2) no O2w Cd1 N2 N3 . . -9.4(3) no O1 Cd1 N2 N3 . . 162.2(3) no O1w' Cd1 N2 N3 . . -101.4(4) no N1 Cd1 N2 N3 . . 168.9(3) no O1w Cd1 N2 N3 . . -92.3(4) no O3 Cd1 N2 N3 . . 80.7(3) no C6 N2 N3 C8 . . -0.5(4) no Cd1 N2 N3 C8 . . -158.2(3) no C5 N1 C1 C2 . . -0.9(5) no Cd1 N1 C1 C2 . . 172.6(2) no N1 C1 C2 C3 . . 1.6(5) no C1 C2 C3 C4 . . -0.7(5) no C2 C3 C4 C5 . . -0.6(5) no C1 N1 C5 C4 . . -0.5(4) no Cd1 N1 C5 C4 . . -174.6(2) no C1 N1 C5 C6 . . 179.0(3) no Cd1 N1 C5 C6 . . 4.9(3) no C3 C4 C5 N1 . . 1.3(5) no C3 C4 C5 C6 . . -178.2(3) no N3 N2 C6 C7 . . 0.4(3) no Cd1 N2 C6 C7 . . 164.6(2) no N3 N2 C6 C5 . . -179.1(3) no Cd1 N2 C6 C5 . . -14.9(3) no N1 C5 C6 N2 . . 7.2(4) no C4 C5 C6 N2 . . -173.3(3) no N1 C5 C6 C7 . . -172.3(3) no C4 C5 C6 C7 . . 7.2(5) no N2 C6 C7 C8 . . -0.3(4) no C5 C6 C7 C8 . . 179.2(3) no N2 N3 C8 C7 . . 0.3(4) no C6 C7 C8 N3 . . 0.0(4) no Cd1 O3 C11 C12 . . 127.2(3) no Cd1 O3 C11 C12 . 2_666 -52.8(4) no O1 C9 C10 O2 . . 0.9(7) no C10 C9 C10 O2 2_767 . -179.3(5) no O1 C9 C10 C9 . 2_767 -179.9(5) no C10 C9 C10 C9 2_767 2_767 0.0 no Cd1 O1 C9 C10 . 2_767 -173.1(3) no Cd1 O1 C9 C10 . . 6.7(6) no O3 C11 C12 O4 . . -0.7(7) no C12 C11 C12 O4 2_666 . 179.3(5) no O3 C11 C12 C11 . 2_666 180.0(4) no C12 C11 C12 C11 2_666 2_666 0.0 no