#------------------------------------------------------------------------------ #$Date: 2016-02-20 03:06:23 +0000 (Sat, 20 Feb 2016) $ #$Revision: 176774 $ #$URL: svn://www.crystallography.net/cod/cif/2/20/52/2205217.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/. The original data for this entry # were provided by IUCr Journals, http://journals.iucr.org/. # # The file may be used within the scientific community so long as # proper attribution is given to the journal article from which the # data were obtained. # data_2205217 loop_ _publ_author_name 'Graham Smith' 'Urs D. Wermuth' 'Peter C. Healy' _publ_section_title ; Cytosinium 3,5-dinitrosalicylate ; _journal_issue 3 _journal_name_full 'Acta Crystallographica Section E' _journal_page_first o746 _journal_page_last o748 _journal_paper_doi 10.1107/S160053680500499X _journal_volume 61 _journal_year 2005 _chemical_formula_iupac 'C7 H3 N2 O7 +, C4 H6 N3 O -' _chemical_formula_moiety 'C7 H3 N2 O7 +, C4 H6 N3 O -' _chemical_formula_sum 'C11 H9 N5 O8' _chemical_formula_weight 339.23 _chemical_melting_point 528.5(12) _chemical_name_common 'cytosinium 3,5-dinitrosalicylate ' _chemical_name_systematic ; 6-amino-2-oxo-2,3-dihydropyrimidinium 3,5-dinitrosalicylate ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2yn' _symmetry_space_group_name_H-M 'P 1 21/n 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method 'SHELXL97 (Sheldrick, 1997) ' _cell_angle_alpha 90.00 _cell_angle_beta 90.07(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 9.339(3) _cell_length_b 5.766(3) _cell_length_c 24.662(9) _cell_measurement_reflns_used 25 _cell_measurement_temperature 298(2) _cell_measurement_theta_max 17.3 _cell_measurement_theta_min 12.7 _cell_volume 1328.0(9) _computing_cell_refinement ; MSC/AFC Diffractometer Control Software ; _computing_data_collection ; MSC/AFC Diffractometer Control Software (Molecular Structure Corporation, 1999) ; _computing_data_reduction ; TEXSAN for Windows (Molecular Structure Corporation, 1999) ; _computing_molecular_graphics 'PLATON (Spek, 2003)' _computing_publication_material PLATON _computing_structure_refinement 'SHELXL97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS97 (Sheldrick, 1997)' _diffrn_ambient_temperature 298(2) _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.998 _diffrn_measurement_device_type 'Rigaku AFC-7R' _diffrn_measurement_method \w--2\q _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'Rigaku rotating anode' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71069 _diffrn_reflns_av_R_equivalents 0.0246 _diffrn_reflns_av_sigmaI/netI 0.0599 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_h_min -5 _diffrn_reflns_limit_k_max 3 _diffrn_reflns_limit_k_min -7 _diffrn_reflns_limit_l_max 32 _diffrn_reflns_limit_l_min -32 _diffrn_reflns_number 3572 _diffrn_reflns_theta_full 27.51 _diffrn_reflns_theta_max 27.51 _diffrn_reflns_theta_min 3.30 _diffrn_standards_decay_% 1.0 _diffrn_standards_interval_time 150 _diffrn_standards_number 3 _exptl_absorpt_coefficient_mu 0.148 _exptl_absorpt_correction_type none _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.697 _exptl_crystal_density_method 'not measured' _exptl_crystal_description prismatic _exptl_crystal_F_000 696 _exptl_crystal_size_max 0.55 _exptl_crystal_size_mid 0.30 _exptl_crystal_size_min 0.15 _refine_diff_density_max 0.239 _refine_diff_density_min -0.294 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.926 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 233 _refine_ls_number_reflns 3059 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.926 _refine_ls_R_factor_all 0.1050 _refine_ls_R_factor_gt 0.0444 _refine_ls_shift/su_max 0.002 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w = 1/[\s^2^(Fo^2^)+(0.10P)^2^+0.9288P] where P = (Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1193 _refine_ls_wR_factor_ref 0.1597 _reflns_number_gt 1728 _reflns_number_total 3059 _reflns_threshold_expression F^2^>2\s(F^2^) _cod_data_source_file bt6603.cif _cod_data_source_block I _cod_depositor_comments ; The following automatic conversions were performed: '_chemical_melting_point' value '527.3--529.6 ' was changed to '528.5(12)' - the average value was taken and precision was estimated. Automatic conversion script Id: cif_fix_values 1646 2011-03-28 12:23:43Z adriana The following automatic conversions were performed: '_chemical_melting_point' value '527.3--529.6 ' was changed to '528.5(12)' - the average value was taken and precision was estimated. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_original_sg_symbol_H-M 'P 21/n' _cod_database_code 2205217 _cod_database_fobs_code 2205217 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x+1/2, -y+1/2, z+1/2' loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_12 _atom_site_aniso_U_13 _atom_site_aniso_U_23 O2 0.0439(10) 0.0407(11) 0.0382(10) -0.0088(9) -0.0115(8) 0.0068(9) O31 0.0629(13) 0.0589(14) 0.0337(10) 0.0002(11) -0.0133(9) 0.0010(10) O32 0.0404(10) 0.0380(11) 0.0687(13) -0.0090(9) -0.0248(9) 0.0048(10) O51 0.0658(14) 0.0483(13) 0.0616(14) -0.0189(11) -0.0088(11) 0.0114(11) O52 0.0797(17) 0.0863(19) 0.0625(15) -0.0210(14) -0.0347(13) 0.0349(14) O71 0.0543(12) 0.0609(13) 0.0403(10) -0.0240(11) -0.0151(9) -0.0013(10) O72 0.0421(10) 0.0407(11) 0.0479(11) -0.0112(9) -0.0097(9) 0.0011(9) N3 0.0396(12) 0.0267(11) 0.0434(12) 0.0006(9) -0.0168(10) -0.0033(9) N5 0.0425(13) 0.0436(13) 0.0415(12) 0.0006(11) -0.0030(10) 0.0066(11) C1 0.0271(11) 0.0361(14) 0.0322(12) -0.0025(10) -0.0034(9) -0.0052(10) C2 0.0298(11) 0.0322(13) 0.0326(12) 0.0009(10) -0.0053(9) -0.0025(10) C3 0.0297(12) 0.0342(13) 0.0308(12) 0.0034(10) -0.0083(9) -0.0046(10) C4 0.0293(12) 0.0291(12) 0.0389(13) -0.0005(10) -0.0035(9) -0.0038(11) C5 0.0327(12) 0.0343(13) 0.0337(12) 0.0027(11) -0.0033(10) 0.0017(11) C6 0.0307(12) 0.0398(14) 0.0326(12) 0.0008(11) -0.0061(10) -0.0029(11) C7 0.0328(12) 0.0398(14) 0.0353(12) -0.0038(11) -0.0028(10) -0.0043(11) O21 0.0576(12) 0.0413(11) 0.0401(10) -0.0037(9) -0.0069(9) 0.0087(9) N11 0.0432(12) 0.0379(12) 0.0312(11) -0.0016(10) -0.0136(9) -0.0017(10) N31 0.0335(11) 0.0299(11) 0.0342(11) -0.0047(9) -0.0047(9) -0.0036(9) N41 0.0461(13) 0.0393(13) 0.0345(11) -0.0108(11) -0.0120(10) 0.0018(10) C21 0.0356(12) 0.0353(14) 0.0329(12) 0.0005(11) -0.0041(10) -0.0014(11) C41 0.0305(12) 0.0318(13) 0.0274(11) 0.0001(10) -0.0019(9) -0.0013(10) C51 0.0369(13) 0.0310(13) 0.0381(13) -0.0057(11) -0.0056(10) 0.0008(11) C61 0.0368(13) 0.0333(14) 0.0414(13) -0.0051(11) -0.0093(11) -0.0073(11) loop_ _atom_site_label _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_thermal_displace_type _atom_site_occupancy _atom_site_type_symbol O2 0.1595(2) -0.1388(3) 0.49099(7) 0.0409(6) Uani 1.000 O O31 0.3281(2) 0.1442(4) 0.55255(8) 0.0518(7) Uani 1.000 O O32 0.5042(2) 0.2595(3) 0.50223(9) 0.0490(7) Uani 1.000 O O51 0.3458(2) 0.6928(4) 0.34537(9) 0.0586(8) Uani 1.000 O O52 0.1785(3) 0.5501(5) 0.29555(10) 0.0761(10) Uani 1.000 O O71 -0.0799(2) -0.1564(4) 0.35375(8) 0.0518(7) Uani 1.000 O O72 -0.0214(2) -0.3111(3) 0.43315(8) 0.0436(6) Uani 1.000 O N3 0.3791(2) 0.2005(4) 0.50868(9) 0.0366(7) Uani 1.000 N N5 0.2518(2) 0.5503(4) 0.33644(9) 0.0425(7) Uani 1.000 N C1 0.0987(2) 0.0323(4) 0.40605(10) 0.0318(7) Uani 1.000 C C2 0.1803(2) 0.0250(4) 0.45504(10) 0.0315(7) Uani 1.000 C C3 0.2862(2) 0.1980(4) 0.46090(10) 0.0316(7) Uani 1.000 C C4 0.3111(2) 0.3664(4) 0.42249(10) 0.0324(7) Uani 1.000 C C5 0.2267(3) 0.3690(5) 0.37655(10) 0.0336(7) Uani 1.000 C C6 0.1210(3) 0.2035(5) 0.36799(10) 0.0344(7) Uani 1.000 C C7 -0.0096(3) -0.1554(5) 0.39615(10) 0.0360(7) Uani 1.000 C O21 0.6400(2) 0.7167(3) 0.24766(8) 0.0463(6) Uani 1.000 O N11 0.5412(2) 0.3624(4) 0.26503(9) 0.0374(7) Uani 1.000 N N31 0.6948(2) 0.5337(4) 0.32702(8) 0.0325(6) Uani 1.000 N N41 0.7608(3) 0.3521(4) 0.40595(9) 0.0400(7) Uani 1.000 N C21 0.6268(3) 0.5494(5) 0.27722(10) 0.0346(7) Uani 1.000 C C41 0.6847(2) 0.3507(4) 0.36125(9) 0.0299(7) Uani 1.000 C C51 0.5911(3) 0.1668(5) 0.34676(10) 0.0353(8) Uani 1.000 C C61 0.5244(3) 0.1779(5) 0.29864(11) 0.0372(8) Uani 1.000 C H4 0.384600 0.478300 0.427400 0.0390 Uiso 1.000 H H6 0.064300 0.208300 0.336100 0.0410 Uiso 1.000 H H72 0.0513 -0.2664 0.4652 0.0490 Uiso 1.000 H H11 0.506(3) 0.363(5) 0.2334(12) 0.043(8) Uiso 1.000 H H31 0.762(4) 0.639(6) 0.3336(14) 0.069(11) Uiso 1.000 H H41A 0.754(3) 0.229(5) 0.4304(12) 0.048(9) Uiso 1.000 H H41B 0.828(3) 0.466(6) 0.4142(12) 0.055(9) Uiso 1.000 H H51 0.576300 0.038800 0.370400 0.0420 Uiso 1.000 H H61 0.463600 0.054000 0.287900 0.0450 Uiso 1.000 H loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_publ_flag C7 O72 H72 107.6 no O31 N3 O32 123.8(2) no O32 N3 C3 117.6(2) no O31 N3 C3 118.55(19) no O51 N5 C5 118.3(2) no O51 N5 O52 123.6(3) no O52 N5 C5 118.1(2) no C21 N11 C61 123.2(2) no C21 N31 C41 124.8(2) no C61 N11 H11 121(2) no C21 N11 H11 115(2) no C41 N31 H31 118(2) no C21 N31 H31 116(2) no C41 N41 H41B 123.6(19) no C41 N41 H41A 120.1(18) no H41A N41 H41B 116(3) no C2 C1 C7 118.4(2) no C6 C1 C7 120.5(2) no C2 C1 C6 121.1(2) no C1 C2 C3 116.1(2) no O2 C2 C3 122.9(2) no O2 C2 C1 121.0(2) no N3 C3 C2 120.3(2) no C2 C3 C4 123.1(2) no N3 C3 C4 116.57(19) no C3 C4 C5 118.4(2) no C4 C5 C6 121.6(2) no N5 C5 C6 120.2(2) no N5 C5 C4 118.2(2) no C1 C6 C5 119.7(2) no O71 C7 O72 123.6(3) no O72 C7 C1 116.4(2) no O71 C7 C1 120.0(2) no C3 C4 H4 120.87 no C5 C4 H4 120.69 no C1 C6 H6 120.09 no C5 C6 H6 120.21 no O21 C21 N11 123.3(2) no O21 C21 N31 122.5(3) no N11 C21 N31 114.2(2) no N31 C41 N41 118.8(2) no N31 C41 C51 117.9(2) no N41 C41 C51 123.4(2) no C41 C51 C61 118.2(2) no N11 C61 C51 121.6(3) no C41 C51 H51 120.96 no C61 C51 H51 120.79 no N11 C61 H61 119.18 no C51 C61 H61 119.24 no loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_publ_flag O2 C2 1.310(3) no O31 N3 1.225(3) no O32 N3 1.227(3) no O51 N5 1.223(3) no O52 N5 1.220(3) no O71 C7 1.235(3) no O72 C7 1.285(3) no O72 H72 1.070 no O21 C21 1.215(3) no N3 C3 1.464(3) no N5 C5 1.458(4) no N11 C21 1.376(4) no N11 C61 1.358(4) no N31 C21 1.386(3) no N31 C41 1.355(3) no N41 C41 1.312(3) no N11 H11 0.85(3) no N31 H31 0.89(4) no N41 H41B 0.93(3) no N41 H41A 0.93(3) no C1 C6 1.378(4) no C1 C2 1.430(3) no C1 C7 1.501(4) no C2 C3 1.412(3) no C3 C4 1.376(3) no C4 C5 1.381(4) no C5 C6 1.389(4) no C4 H4 0.9499 no C6 H6 0.9491 no C41 C51 1.420(4) no C51 C61 1.342(4) no C51 H51 0.9505 no C61 H61 0.9504 no loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_site_symmetry_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_publ_flag O72 H72 O2 . 1.07 1.40 2.425(3) 156 yes N11 H11 O52 2_545 0.85(3) 2.60(3) 3.113(4) 121(2) yes N11 H11 O71 2_555 0.85(3) 2.26(3) 2.953(3) 139(2) yes N31 H31 O71 1_665 0.89(4) 1.95(4) 2.839(3) 173(3) yes N41 H41A O2 3_656 0.93(3) 2.16(3) 2.921(3) 137(2) yes N41 H41A O31 3_656 0.93(3) 2.32(3) 3.150(4) 148(2) yes N41 H41B O72 1_665 0.93(3) 1.96(3) 2.892(3) 176(3) yes C4 H4 O32 3_666 0.95 2.53 3.329(3) 142 no C51 H51 O31 3_656 0.95 2.35 3.155(4) 142 no C61 H61 O52 2_545 0.95 2.45 3.089(4) 124 no loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_publ_flag O32 N3 C3 C4 -34.6(3) no O32 N3 C3 C2 143.6(2) no O31 N3 C3 C2 -36.5(3) no O31 N3 C3 C4 145.3(2) no O51 N5 C5 C6 -180.0(2) no O51 N5 C5 C4 -0.4(4) no O52 N5 C5 C4 178.9(2) no O52 N5 C5 C6 -0.6(4) no C61 N11 C21 N31 -0.1(4) no C61 N11 C21 O21 -178.6(3) no C21 N11 C61 C51 0.2(4) no C41 N31 C21 N11 2.0(4) no C21 N31 C41 N41 176.3(2) no C21 N31 C41 C51 -3.9(3) no C41 N31 C21 O21 -179.4(2) no C6 C1 C7 O72 178.5(2) no C7 C1 C2 C3 176.5(2) no C2 C1 C6 C5 1.5(4) no C6 C1 C7 O71 -0.3(4) no C6 C1 C2 C3 -1.8(3) no C7 C1 C2 O2 -1.3(3) no C6 C1 C2 O2 -179.6(2) no C2 C1 C7 O72 0.2(4) no C7 C1 C6 C5 -176.7(2) no C2 C1 C7 O71 -178.6(2) no C1 C2 C3 N3 -177.7(2) no O2 C2 C3 N3 0.0(3) no C1 C2 C3 C4 0.3(3) no O2 C2 C3 C4 178.1(2) no N3 C3 C4 C5 179.4(2) no C2 C3 C4 C5 1.3(3) no C3 C4 C5 C6 -1.6(4) no C3 C4 C5 N5 178.9(2) no N5 C5 C6 C1 179.7(2) no C4 C5 C6 C1 0.2(4) no N31 C41 C51 C61 3.8(4) no N41 C41 C51 C61 -176.4(3) no C41 C51 C61 N11 -2.1(4) no